Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99397 * 2 1 4 4 H 1.09000 * 109.47410 * 30.89032 * 3 2 1 5 5 C 1.53003 * 109.46953 * 150.89442 * 3 2 1 6 6 N 1.46505 * 109.46839 * 299.99839 * 5 3 2 7 7 C 1.34774 * 119.99799 * 180.02562 * 6 5 3 8 8 O 1.21360 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.49342 * 119.99881 * 179.97438 * 7 6 5 10 10 O 1.21387 * 119.99966 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00255 * 179.97438 * 9 7 6 12 12 C 1.39929 * 120.00266 * 180.02562 * 11 9 7 13 13 C 1.40455 * 125.98178 * 359.97438 * 12 11 9 14 14 C 1.35214 * 107.87034 * 179.73643 * 13 12 11 15 15 N 1.34989 * 107.87203 * 0.42514 * 14 13 12 16 16 C 1.46507 * 125.97077 * 179.83563 * 15 14 13 17 17 C 1.50697 * 109.47211 * 124.71539 * 16 15 14 18 18 H 1.07996 * 119.99899 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99865 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00548 * 359.72294 * 19 17 16 21 21 Si 1.86805 * 119.99729 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47247 * 269.72006 * 21 19 17 23 23 H 1.48497 * 109.47188 * 29.72043 * 21 19 17 24 24 H 1.48501 * 109.46907 * 149.72187 * 21 19 17 25 25 N 1.31275 * 125.98069 * 179.97438 * 12 11 9 26 26 C 1.53003 * 109.47411 * 270.88942 * 3 2 1 27 27 C 1.52996 * 109.47115 * 178.04574 * 26 3 2 28 28 C 1.53005 * 109.47147 * 298.04827 * 26 3 2 29 29 H 1.08999 * 109.46912 * 175.52977 * 1 2 3 30 30 H 1.08994 * 109.47347 * 295.52688 * 1 2 3 31 31 H 1.08995 * 109.47389 * 55.53195 * 1 2 3 32 32 H 1.08995 * 109.47221 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47398 * 59.99582 * 5 3 2 34 34 H 0.96995 * 119.99660 * 359.97438 * 6 5 3 35 35 H 0.97009 * 120.00097 * 359.97438 * 11 9 7 36 36 H 1.08000 * 126.06475 * 359.97438 * 13 12 11 37 37 H 1.08004 * 126.06155 * 180.26012 * 14 13 12 38 38 H 1.09008 * 109.46490 * 4.71746 * 16 15 14 39 39 H 1.08994 * 109.47081 * 244.72380 * 16 15 14 40 40 H 0.97003 * 119.99167 * 0.27522 * 20 19 17 41 41 H 1.08999 * 109.47056 * 58.04469 * 26 3 2 42 42 H 1.08998 * 109.47391 * 299.99772 * 27 26 3 43 43 H 1.08998 * 109.47333 * 60.00971 * 27 26 3 44 44 H 1.09005 * 109.47032 * 179.97438 * 27 26 3 45 45 H 1.08998 * 109.47203 * 53.57199 * 28 26 3 46 46 H 1.08999 * 109.46887 * 173.57497 * 28 26 3 47 47 H 1.09000 * 109.46745 * 293.57165 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3522 1.9961 0.5276 5 6 3.3690 1.2589 0.7017 6 7 3.1900 0.8040 2.0828 7 6 4.2575 0.6856 2.8969 8 8 5.3670 0.9555 2.4859 9 6 4.0750 0.2225 4.3049 10 8 2.9653 -0.0478 4.7159 11 7 5.1425 0.1036 5.1190 12 6 4.9716 -0.3309 6.4381 13 6 3.7510 -0.6746 7.0421 14 6 4.0088 -1.0469 8.3161 15 7 5.3387 -0.9356 8.5192 16 6 6.0470 -1.2359 9.7660 17 6 7.1366 -2.2410 9.4952 18 1 7.2864 -2.6187 8.4945 19 6 7.9417 -2.6793 10.5251 20 7 7.7624 -2.2161 11.7428 21 14 9.2930 -3.9246 10.1892 22 1 8.7553 -5.2978 10.3644 23 1 9.7838 -3.7592 8.7975 24 1 10.4138 -3.7070 11.1386 25 7 5.9239 -0.4885 7.3277 26 6 2.1971 1.7806 -1.4423 27 6 2.7740 3.1977 -1.4418 28 6 3.1591 0.8385 -2.1690 29 1 -0.3633 -1.0245 -0.0801 30 1 -0.3634 0.4428 0.9273 31 1 -0.3634 0.5816 -0.8472 32 1 3.8124 2.2545 0.7013 33 1 4.0269 0.5683 0.1741 34 1 2.3031 0.5887 2.4113 35 1 6.0295 0.3186 4.7902 36 1 2.7794 -0.6500 6.5711 37 1 3.2797 -1.3727 9.0432 38 1 5.3456 -1.6471 10.4922 39 1 6.4868 -0.3213 10.1634 40 1 7.0609 -1.5691 11.9170 41 1 1.2339 1.7806 -1.9526 42 1 2.0886 3.8688 -0.9242 43 1 3.7372 3.1976 -0.9317 44 1 2.9076 3.5360 -2.4693 45 1 2.8058 -0.1879 -2.0711 46 1 3.2041 1.1083 -3.2241 47 1 4.1528 0.9243 -1.7294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444517101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = -63.321508 kcal Electronic energy + Delta-G solvation = -28601.255692 eV Core-core repulsion = 24399.318742 eV Total energy + Delta-G solvation = -4201.936950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52967 -41.61961 -40.21919 -39.41915 -36.81634 -36.24733 -35.73039 -35.16427 -32.76688 -31.10066 -30.13780 -28.48420 -28.12075 -27.33318 -26.28889 -25.06299 -24.33853 -22.71675 -22.00854 -21.27299 -20.59981 -19.47785 -19.22777 -18.42268 -17.84836 -17.76615 -17.32456 -17.13250 -16.76406 -16.14297 -16.08408 -15.82245 -15.65495 -15.44003 -15.15241 -15.03427 -14.69383 -14.41234 -14.19846 -14.03956 -13.95547 -13.79548 -13.77859 -13.26644 -12.87447 -12.80963 -12.79291 -12.60862 -12.29749 -12.17208 -12.14777 -11.98934 -11.76841 -11.68902 -11.47518 -11.03659 -10.89136 -10.69301 -10.47997 -10.36755 -9.92540 -9.31120 -8.79107 -6.56398 -0.00084 0.79336 1.04499 1.50296 1.57876 1.67920 1.72735 1.79438 2.20027 2.45874 2.52167 2.73654 3.00574 3.19924 3.61093 3.80094 3.85026 3.95581 4.09246 4.25624 4.28924 4.47792 4.50332 4.51430 4.57008 4.60918 4.68736 4.73666 4.76225 4.77259 4.81756 4.89741 4.93228 5.01861 5.05443 5.08106 5.22221 5.42714 5.45004 5.52385 5.68454 5.75231 5.89570 6.09671 6.21265 6.24897 6.40353 6.50541 6.73854 6.86077 7.18527 8.58148 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.001862 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.312173 B =15031.890489 C =15476.183375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.114 3.886 6 N -0.676 5.676 7 C 0.523 3.477 8 O -0.536 6.536 9 C 0.518 3.482 10 O -0.506 6.506 11 N -0.601 5.601 12 C 0.261 3.739 13 C -0.285 4.285 14 C 0.060 3.940 15 N -0.339 5.339 16 C 0.258 3.742 17 C -0.622 4.622 18 H 0.044 0.956 19 C -0.018 4.018 20 N -0.922 5.922 21 Si 1.121 2.879 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.275 1.275 25 N -0.341 5.341 26 C -0.108 4.108 27 C -0.153 4.153 28 C -0.149 4.149 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.428 0.572 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 9.357 -27.410 33.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.025 3.975 4 H 0.104 0.896 5 C -0.008 4.008 6 N -0.329 5.329 7 C 0.303 3.697 8 O -0.413 6.413 9 C 0.299 3.701 10 O -0.379 6.379 11 N -0.250 5.250 12 C 0.006 3.994 13 C -0.316 4.316 14 C -0.088 4.088 15 N -0.121 5.121 16 C 0.139 3.861 17 C -0.660 4.660 18 H 0.062 0.938 19 C -0.218 4.218 20 N -0.558 5.558 21 Si 0.942 3.058 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.200 1.200 25 N -0.172 5.172 26 C -0.127 4.127 27 C -0.210 4.210 28 C -0.206 4.206 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.258 0.742 35 H 0.267 0.733 36 H 0.196 0.804 37 H 0.225 0.775 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.807 8.423 -26.404 31.422 hybrid contribution -2.023 1.040 -0.550 2.341 sum -16.830 9.463 -26.954 33.156 Atomic orbital electron populations 1.22977 0.79572 1.03688 1.01060 1.87958 1.21235 1.27500 1.95105 1.22457 0.93197 0.85600 0.96234 0.89592 1.21979 0.98143 1.01730 0.78994 1.45570 1.10111 1.64898 1.12349 1.19406 0.85491 0.79470 0.85378 1.90798 1.24859 1.49603 1.76041 1.20353 0.83988 0.78788 0.86978 1.90682 1.24312 1.47283 1.75661 1.42121 1.12412 1.63300 1.07205 1.19339 0.93458 1.00489 0.86083 1.21775 0.99094 1.16303 0.94384 1.23267 0.86196 1.00315 0.99039 1.48645 1.05507 1.48638 1.09303 1.19480 0.92931 0.95916 0.77813 1.22301 1.18952 1.27311 0.97461 0.93785 1.27230 1.01852 1.00848 0.91874 1.70919 1.33220 1.30036 1.21666 0.82857 0.73364 0.73988 0.75598 1.19237 1.20785 1.20040 1.77341 1.21232 1.25784 0.92847 1.21508 1.00811 0.96042 0.94345 1.21930 1.01289 0.94805 1.02994 1.21832 0.98938 0.99433 1.00378 0.89155 0.93052 0.92661 0.88190 0.90451 0.74155 0.73337 0.80430 0.77521 0.92330 0.96371 0.92853 0.89586 0.91588 0.92345 0.91480 0.92852 0.91923 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.79 113.37 1.22 1.41 16 2 O -0.40 -5.27 9.40 -148.98 -1.40 -6.67 16 3 C 0.08 0.84 1.99 30.60 0.06 0.90 16 4 H 0.09 0.62 7.84 -2.39 -0.02 0.60 16 5 C 0.11 1.61 4.66 86.38 0.40 2.01 16 6 N -0.68 -12.10 5.44 -464.51 -2.53 -14.62 16 7 C 0.52 12.72 7.89 87.24 0.69 13.41 16 8 O -0.54 -15.16 16.48 -3.28 -0.05 -15.21 16 9 C 0.52 14.84 7.85 87.24 0.69 15.53 16 10 O -0.51 -15.27 13.60 -3.36 -0.05 -15.32 16 11 N -0.60 -19.73 5.43 -308.90 -1.68 -21.41 16 12 C 0.26 10.45 8.10 133.40 1.08 11.53 16 13 C -0.28 -10.56 9.60 22.11 0.21 -10.34 16 14 C 0.06 2.26 11.43 83.51 0.95 3.21 16 15 N -0.34 -15.76 3.67 -351.83 -1.29 -17.05 16 16 C 0.26 13.14 5.57 85.63 0.48 13.62 16 17 C -0.62 -35.49 9.24 25.60 0.24 -35.25 16 18 H 0.04 2.65 7.81 -2.91 -0.02 2.62 16 19 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 20 N -0.92 -53.77 13.65 21.45 0.29 -53.48 16 21 Si 1.12 50.24 29.90 68.60 2.05 52.29 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 N -0.34 -16.14 12.42 -54.54 -0.68 -16.82 16 26 C -0.11 -0.88 2.90 -10.79 -0.03 -0.91 16 27 C -0.15 -1.01 8.88 71.98 0.64 -0.37 16 28 C -0.15 -1.54 8.54 71.98 0.61 -0.93 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.30 7.69 -2.39 -0.02 0.28 16 32 H 0.10 1.26 6.47 -2.39 -0.02 1.25 16 33 H 0.08 1.29 6.54 -2.39 -0.02 1.27 16 34 H 0.42 6.69 7.82 -92.71 -0.72 5.97 16 35 H 0.43 13.14 8.29 -92.70 -0.77 12.37 16 36 H 0.18 5.98 5.91 -2.91 -0.02 5.97 16 37 H 0.21 5.91 8.06 -2.91 -0.02 5.88 16 38 H 0.06 2.82 7.94 -2.38 -0.02 2.81 16 39 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 40 H 0.26 15.03 7.22 -92.71 -0.67 14.37 16 41 H 0.09 0.58 7.70 -2.39 -0.02 0.56 16 42 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.06 0.45 6.48 -2.39 -0.02 0.43 16 44 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.05 0.69 7.56 -2.39 -0.02 0.67 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.05 0.61 6.76 -2.39 -0.02 0.60 16 Total: -1.00 -71.57 393.02 2.00 -69.57 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.38 Total: 25.45 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.71 Total: 13.27 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -5.88 Total: -123.38 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.50 Total: -37.20 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -71.57 2.00 -69.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444517101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.244 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds