Wall clock time and date at job start Tue Mar 31 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 6 6 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 7 7 H 1.08997 * 109.47369 * 304.99623 * 6 3 2 8 8 O 1.42903 * 109.47359 * 65.00011 * 6 3 2 9 9 C 1.52998 * 109.47162 * 184.99817 * 6 3 2 10 10 N 1.46496 * 109.47664 * 180.02562 * 9 6 3 11 11 C 1.34776 * 120.00308 * 179.97438 * 10 9 6 12 12 O 1.21352 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.49344 * 119.99664 * 179.97438 * 11 10 9 14 14 O 1.21382 * 120.00422 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99664 * 179.97438 * 13 11 10 16 16 C 1.39934 * 119.99962 * 180.02562 * 15 13 11 17 17 C 1.40457 * 125.97882 * 359.71444 * 16 15 13 18 18 C 1.35214 * 107.86457 * 179.86638 * 17 16 15 19 19 N 1.34986 * 107.88023 * 0.39476 * 18 17 16 20 20 C 1.46497 * 125.97565 * 179.73012 * 19 18 17 21 21 C 1.50698 * 109.47245 * 125.00370 * 20 19 18 22 22 H 1.07994 * 119.99863 * 359.97438 * 21 20 19 23 23 C 1.37872 * 119.99816 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47241 * 60.00049 * 25 23 21 27 27 H 1.48504 * 109.47182 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47432 * 299.99693 * 25 23 21 29 29 N 1.31271 * 125.97805 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09002 * 109.46911 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47273 * 300.00152 * 5 3 2 37 37 H 1.08998 * 109.47609 * 60.00099 * 5 3 2 38 38 H 0.96701 * 114.00222 * 59.99315 * 8 6 3 39 39 H 1.09001 * 109.47299 * 300.00122 * 9 6 3 40 40 H 1.08999 * 109.47267 * 59.99499 * 9 6 3 41 41 H 0.97003 * 119.99425 * 359.97438 * 10 9 6 42 42 H 0.97003 * 120.00266 * 0.02562 * 15 13 11 43 43 H 1.08004 * 126.07095 * 0.02562 * 17 16 15 44 44 H 1.08010 * 126.05993 * 180.10628 * 18 17 16 45 45 H 1.09005 * 109.47110 * 245.00282 * 20 19 18 46 46 H 1.09000 * 109.47071 * 4.99668 * 20 19 18 47 47 H 0.97002 * 119.99891 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.8570 0.8801 1.0113 8 8 4.1393 0.8403 -1.0350 9 6 4.0645 2.8850 0.2511 10 7 5.5245 2.8869 0.3709 11 6 6.1892 4.0530 0.4932 12 8 5.5781 5.1014 0.5045 13 6 7.6776 4.0547 0.6159 14 8 8.2888 3.0060 0.6050 15 7 8.3423 5.2208 0.7376 16 6 9.7370 5.2225 0.8521 17 6 10.5656 4.0885 0.8603 18 6 11.8444 4.5101 0.9843 19 7 11.8309 5.8577 1.0612 20 6 13.0038 6.7230 1.2083 21 6 13.0180 7.7428 0.0988 22 1 12.2322 7.7456 -0.6420 23 6 14.0347 8.6713 0.0289 24 7 14.9919 8.6675 0.9308 25 14 14.0527 9.9349 -1.3468 26 1 12.8189 10.7583 -1.2787 27 1 15.2416 10.8122 -1.1976 28 1 14.1117 9.2390 -2.6574 29 7 10.4992 6.2840 0.9762 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9990 3.1541 -1.3076 36 1 2.0699 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.9206 1.2911 -1.8621 39 1 3.7723 3.4493 -0.6345 40 1 3.6263 3.3458 1.1364 41 1 6.0129 2.0488 0.3622 42 1 7.8540 6.0589 0.7459 43 1 10.2396 3.0621 0.7791 44 1 12.7209 3.8799 1.0205 45 1 12.9603 7.2335 2.1704 46 1 13.9096 6.1189 1.1582 47 1 15.7074 9.3205 0.8814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444586952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:12 Heat of formation + Delta-G solvation = -50.229417 kcal Electronic energy + Delta-G solvation = -28211.038426 eV Core-core repulsion = 24009.669192 eV Total energy + Delta-G solvation = -4201.369234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11320 -40.31042 -39.38393 -38.35311 -35.59968 -35.12347 -34.41243 -33.35601 -31.05947 -30.91735 -29.41694 -28.76358 -27.05564 -26.18429 -24.70402 -22.93296 -22.36004 -21.35009 -20.66755 -20.21600 -19.69060 -18.46143 -17.41564 -16.78696 -16.68731 -16.58910 -16.45832 -15.97532 -15.58014 -15.30622 -15.09030 -14.77978 -14.49975 -14.38948 -14.16604 -13.88134 -13.76681 -13.17819 -12.95604 -12.79168 -12.59905 -12.41361 -12.29111 -12.22034 -12.02829 -11.90479 -11.69690 -11.55537 -11.17935 -11.07708 -11.02939 -10.86195 -10.55892 -10.45186 -10.27305 -10.03633 -9.59687 -9.58187 -9.54820 -8.64424 -8.23338 -7.58414 -6.25865 -4.31212 1.18393 2.01370 2.65337 3.02157 3.14350 3.25695 3.28938 3.33952 3.65882 3.75605 3.91513 4.00452 4.22028 4.30511 4.31006 4.40008 4.52880 4.67043 4.86899 4.92013 5.00826 5.07226 5.09465 5.20682 5.36243 5.41443 5.42599 5.48284 5.50132 5.57209 5.70909 5.81775 5.84271 5.89091 6.09990 6.31251 6.40902 6.78955 6.87213 7.01690 7.07988 7.23972 7.35779 7.60263 7.68534 7.84577 7.94696 7.97603 8.53720 8.77077 9.34685 10.82891 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028971 B = 0.001692 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.242325 B =16547.044449 C =17051.779141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.121 4.121 4 H 0.083 0.917 5 C -0.161 4.161 6 C 0.099 3.901 7 H 0.109 0.891 8 O -0.554 6.554 9 C 0.083 3.917 10 N -0.695 5.695 11 C 0.516 3.484 12 O -0.517 6.517 13 C 0.512 3.488 14 O -0.498 6.498 15 N -0.598 5.598 16 C 0.250 3.750 17 C -0.286 4.286 18 C 0.054 3.946 19 N -0.314 5.314 20 C 0.257 3.743 21 C -0.531 4.531 22 H 0.069 0.931 23 C 0.063 3.937 24 N -0.895 5.895 25 Si 0.909 3.091 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.275 1.275 29 N -0.295 5.295 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.376 0.624 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.419 0.581 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.290 -17.196 -1.456 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.140 4.140 4 H 0.101 0.899 5 C -0.218 4.218 6 C 0.039 3.961 7 H 0.127 0.873 8 O -0.360 6.360 9 C -0.041 4.041 10 N -0.349 5.349 11 C 0.296 3.704 12 O -0.393 6.393 13 C 0.292 3.708 14 O -0.371 6.371 15 N -0.247 5.247 16 C -0.002 4.002 17 C -0.317 4.317 18 C -0.096 4.096 19 N -0.096 5.096 20 C 0.140 3.860 21 C -0.570 4.570 22 H 0.087 0.913 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 N -0.126 5.126 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.225 0.775 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.256 0.744 42 H 0.260 0.740 43 H 0.179 0.821 44 H 0.188 0.812 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.760 -16.158 -0.865 30.421 hybrid contribution -0.132 0.416 -1.077 1.162 sum -25.891 -15.742 -1.942 30.364 Atomic orbital electron populations 1.21840 0.95800 1.01712 1.01875 1.21486 0.95694 0.95290 1.02752 1.21785 0.94796 0.97748 0.99670 0.89867 1.21999 1.02517 1.00487 0.96823 1.22249 0.92133 0.91682 0.90011 0.87325 1.86619 1.75600 1.57041 1.16732 1.22305 0.79674 0.98431 1.03701 1.45570 1.07660 1.09293 1.72395 1.19910 0.87957 0.84514 0.78046 1.90791 1.69206 1.31108 1.48169 1.19884 0.88061 0.83988 0.78883 1.90718 1.68403 1.30978 1.46963 1.41993 1.03862 1.09961 1.68862 1.19012 0.83160 0.93636 1.04436 1.21519 0.90704 0.99689 1.19781 1.22584 0.99058 0.85866 1.02127 1.49169 1.04928 1.04858 1.50678 1.19793 0.77733 0.89300 0.99160 1.21213 1.10016 1.14454 1.11291 0.91299 1.24933 0.94907 0.97492 0.96629 1.69906 1.12364 1.36432 1.34587 0.86375 0.77631 0.80731 0.81699 1.19904 1.21018 1.20030 1.77409 0.88573 1.19752 1.26875 0.92730 0.92496 0.92798 0.91874 0.91221 0.92055 0.92186 0.91586 0.77509 0.90250 0.89893 0.74388 0.73974 0.82143 0.81218 0.93551 0.92366 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.67 37.16 0.36 -0.25 16 2 C -0.11 -0.50 5.25 -26.73 -0.14 -0.64 16 3 C -0.12 -0.47 2.22 -90.62 -0.20 -0.67 16 4 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 5 C -0.16 -0.57 8.28 37.16 0.31 -0.26 16 6 C 0.10 0.49 2.80 -26.73 -0.07 0.42 16 7 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 8 O -0.55 -3.34 12.61 -35.23 -0.44 -3.79 16 9 C 0.08 0.54 5.09 -4.04 -0.02 0.52 16 10 N -0.69 -6.27 5.44 -60.77 -0.33 -6.61 16 11 C 0.52 6.34 7.89 -11.64 -0.09 6.25 16 12 O -0.52 -7.31 16.48 5.49 0.09 -7.22 16 13 C 0.51 7.52 7.85 -11.64 -0.09 7.43 16 14 O -0.50 -7.92 13.60 5.47 0.07 -7.85 16 15 N -0.60 -9.83 5.43 -11.58 -0.06 -9.89 16 16 C 0.25 5.02 8.10 -154.55 -1.25 3.76 16 17 C -0.29 -5.47 9.60 -39.82 -0.38 -5.86 16 18 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 19 N -0.31 -7.21 3.67 -62.56 -0.23 -7.44 16 20 C 0.26 6.47 6.26 -5.20 -0.03 6.44 16 21 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 22 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 25 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 N -0.29 -6.79 12.42 31.41 0.39 -6.40 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.21 6.57 -51.93 -0.34 -0.13 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.35 7.96 -51.93 -0.41 -0.06 16 35 H 0.06 0.23 6.56 -51.93 -0.34 -0.11 16 36 H 0.06 0.19 6.72 -51.93 -0.35 -0.16 16 37 H 0.07 0.23 6.57 -51.93 -0.34 -0.11 16 38 H 0.38 1.46 7.19 45.56 0.33 1.78 16 39 H 0.08 0.52 6.56 -51.93 -0.34 0.18 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.42 3.62 7.82 -40.82 -0.32 3.30 16 42 H 0.42 6.37 8.29 -40.82 -0.34 6.03 16 43 H 0.16 2.89 5.91 -52.48 -0.31 2.58 16 44 H 0.17 2.64 8.06 -52.48 -0.42 2.21 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -32.51 392.32 -7.23 -39.74 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.11 Total: 7.08 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.23 Total: 4.57 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.50 Total: -54.77 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.28 Total: -18.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.51 -7.23 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444586952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.487 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds