Wall clock time and date at job start Tue Mar 31 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 6 6 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 7 7 H 1.08997 * 109.47369 * 304.99623 * 6 3 2 8 8 O 1.42903 * 109.47359 * 65.00011 * 6 3 2 9 9 C 1.52998 * 109.47162 * 184.99817 * 6 3 2 10 10 N 1.46496 * 109.47664 * 180.02562 * 9 6 3 11 11 C 1.34776 * 120.00308 * 179.97438 * 10 9 6 12 12 O 1.21352 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.49344 * 119.99664 * 179.97438 * 11 10 9 14 14 O 1.21382 * 120.00422 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99664 * 179.97438 * 13 11 10 16 16 C 1.39934 * 119.99962 * 180.02562 * 15 13 11 17 17 C 1.40457 * 125.97882 * 359.71444 * 16 15 13 18 18 C 1.35214 * 107.86457 * 179.86638 * 17 16 15 19 19 N 1.34986 * 107.88023 * 0.39476 * 18 17 16 20 20 C 1.46497 * 125.97565 * 179.73012 * 19 18 17 21 21 C 1.50698 * 109.47245 * 125.00370 * 20 19 18 22 22 H 1.07994 * 119.99863 * 359.97438 * 21 20 19 23 23 C 1.37872 * 119.99816 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47241 * 60.00049 * 25 23 21 27 27 H 1.48504 * 109.47182 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47432 * 299.99693 * 25 23 21 29 29 N 1.31271 * 125.97805 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09002 * 109.46911 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47273 * 300.00152 * 5 3 2 37 37 H 1.08998 * 109.47609 * 60.00099 * 5 3 2 38 38 H 0.96701 * 114.00222 * 59.99315 * 8 6 3 39 39 H 1.09001 * 109.47299 * 300.00122 * 9 6 3 40 40 H 1.08999 * 109.47267 * 59.99499 * 9 6 3 41 41 H 0.97003 * 119.99425 * 359.97438 * 10 9 6 42 42 H 0.97003 * 120.00266 * 0.02562 * 15 13 11 43 43 H 1.08004 * 126.07095 * 0.02562 * 17 16 15 44 44 H 1.08010 * 126.05993 * 180.10628 * 18 17 16 45 45 H 1.09005 * 109.47110 * 245.00282 * 20 19 18 46 46 H 1.09000 * 109.47071 * 4.99668 * 20 19 18 47 47 H 0.97002 * 119.99891 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.8570 0.8801 1.0113 8 8 4.1393 0.8403 -1.0350 9 6 4.0645 2.8850 0.2511 10 7 5.5245 2.8869 0.3709 11 6 6.1892 4.0530 0.4932 12 8 5.5781 5.1014 0.5045 13 6 7.6776 4.0547 0.6159 14 8 8.2888 3.0060 0.6050 15 7 8.3423 5.2208 0.7376 16 6 9.7370 5.2225 0.8521 17 6 10.5656 4.0885 0.8603 18 6 11.8444 4.5101 0.9843 19 7 11.8309 5.8577 1.0612 20 6 13.0038 6.7230 1.2083 21 6 13.0180 7.7428 0.0988 22 1 12.2322 7.7456 -0.6420 23 6 14.0347 8.6713 0.0289 24 7 14.9919 8.6675 0.9308 25 14 14.0527 9.9349 -1.3468 26 1 12.8189 10.7583 -1.2787 27 1 15.2416 10.8122 -1.1976 28 1 14.1117 9.2390 -2.6574 29 7 10.4992 6.2840 0.9762 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9990 3.1541 -1.3076 36 1 2.0699 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.9206 1.2911 -1.8621 39 1 3.7723 3.4493 -0.6345 40 1 3.6263 3.3458 1.1364 41 1 6.0129 2.0488 0.3622 42 1 7.8540 6.0589 0.7459 43 1 10.2396 3.0621 0.7791 44 1 12.7209 3.8799 1.0205 45 1 12.9603 7.2335 2.1704 46 1 13.9096 6.1189 1.1582 47 1 15.7074 9.3205 0.8814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444586952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:11 Heat of formation + Delta-G solvation = -74.389854 kcal Electronic energy + Delta-G solvation = -28212.086102 eV Core-core repulsion = 24009.669192 eV Total energy + Delta-G solvation = -4202.416910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45374 -41.55605 -40.11395 -39.32873 -36.68678 -35.84274 -35.42702 -35.10485 -32.83786 -31.39087 -31.02387 -29.35337 -28.69814 -26.97699 -25.73910 -24.57475 -23.03351 -22.52788 -21.87790 -21.15952 -20.69060 -19.58092 -18.70994 -18.33183 -17.84399 -17.61323 -17.40136 -16.91252 -16.76629 -16.38474 -16.21377 -15.81731 -15.67942 -15.32795 -15.11905 -14.92949 -14.59348 -14.41267 -14.24122 -13.87606 -13.76364 -13.65700 -13.24939 -13.03381 -12.92188 -12.80498 -12.64244 -12.55304 -12.36706 -12.30510 -12.14831 -12.03896 -11.66373 -11.50765 -11.44614 -11.37108 -10.99543 -10.72583 -10.66883 -10.37914 -9.83953 -9.22110 -8.33707 -6.47449 0.04168 0.85486 1.13333 1.38502 1.40475 1.49054 1.73863 1.83259 2.25526 2.34065 2.57836 2.98726 3.21669 3.46093 3.56852 3.86937 3.91072 3.96226 4.13627 4.21997 4.27709 4.53236 4.58047 4.61783 4.63174 4.70564 4.82498 4.83748 4.88309 4.94839 4.97490 5.02448 5.05974 5.11458 5.18884 5.20084 5.26570 5.52347 5.55743 5.55840 5.74067 5.78210 5.84733 6.14353 6.25140 6.54605 6.63572 6.73604 6.79552 6.96159 7.22534 8.73945 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028971 B = 0.001692 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.242325 B =16547.044449 C =17051.779141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.115 4.115 4 H 0.089 0.911 5 C -0.161 4.161 6 C 0.107 3.893 7 H 0.111 0.889 8 O -0.567 6.567 9 C 0.080 3.920 10 N -0.676 5.676 11 C 0.523 3.477 12 O -0.537 6.537 13 C 0.516 3.484 14 O -0.507 6.507 15 N -0.601 5.601 16 C 0.258 3.742 17 C -0.288 4.288 18 C 0.061 3.939 19 N -0.339 5.339 20 C 0.271 3.729 21 C -0.551 4.551 22 H 0.052 0.948 23 C 0.021 3.979 24 N -0.919 5.919 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.273 1.273 28 H -0.269 1.269 29 N -0.342 5.342 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.385 0.615 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.423 0.577 42 H 0.428 0.572 43 H 0.176 0.824 44 H 0.207 0.793 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.512 -18.205 -2.227 33.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.134 4.134 4 H 0.107 0.893 5 C -0.218 4.218 6 C 0.048 3.952 7 H 0.129 0.871 8 O -0.375 6.375 9 C -0.042 4.042 10 N -0.330 5.330 11 C 0.303 3.697 12 O -0.414 6.414 13 C 0.296 3.704 14 O -0.380 6.380 15 N -0.250 5.250 16 C 0.004 3.996 17 C -0.319 4.319 18 C -0.088 4.088 19 N -0.121 5.121 20 C 0.153 3.847 21 C -0.589 4.589 22 H 0.070 0.930 23 C -0.180 4.180 24 N -0.557 5.557 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.197 1.197 28 H -0.194 1.194 29 N -0.173 5.173 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.261 0.739 42 H 0.266 0.734 43 H 0.193 0.807 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.019 -17.217 -1.642 32.081 hybrid contribution 0.127 0.582 -0.826 1.018 sum -26.892 -16.635 -2.468 31.718 Atomic orbital electron populations 1.21832 0.95476 1.01757 1.02089 1.21457 0.95949 0.95367 1.02284 1.21732 0.93857 0.97639 1.00169 0.89296 1.22003 1.02701 1.00398 0.96736 1.22208 0.92680 0.90449 0.89882 0.87138 1.86602 1.75904 1.57504 1.17442 1.22540 0.77746 0.99757 1.04202 1.45596 1.08764 1.08295 1.70311 1.19417 0.86522 0.85180 0.78614 1.90796 1.68979 1.31897 1.49746 1.20390 0.89195 0.83148 0.77618 1.90695 1.69039 1.31211 1.47093 1.42120 1.02545 1.11028 1.69330 1.19333 0.84600 0.93314 1.02362 1.21754 0.90490 1.00011 1.19646 1.23248 1.00639 0.84754 1.00119 1.48911 1.04459 1.05792 1.52968 1.19387 0.78923 0.89223 0.97189 1.21380 1.09876 1.15845 1.11834 0.92976 1.25700 0.94409 0.99077 0.98787 1.69979 1.12775 1.37166 1.35813 0.85429 0.77791 0.78393 0.78987 1.20074 1.19718 1.19434 1.77321 0.89059 1.21556 1.29345 0.92814 0.92253 0.92602 0.92099 0.91938 0.92140 0.91754 0.91399 0.76477 0.89753 0.89341 0.73923 0.73389 0.80695 0.77613 0.95927 0.91908 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 71.98 0.70 -0.31 16 2 C -0.11 -0.81 5.25 30.60 0.16 -0.65 16 3 C -0.11 -0.69 2.22 -10.79 -0.02 -0.71 16 4 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 5 C -0.16 -0.85 8.28 71.98 0.60 -0.26 16 6 C 0.11 0.86 2.80 30.59 0.09 0.94 16 7 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 8 O -0.57 -5.80 12.61 -148.98 -1.88 -7.68 16 9 C 0.08 0.89 5.09 86.38 0.44 1.33 16 10 N -0.68 -10.97 5.44 -464.54 -2.53 -13.50 16 11 C 0.52 12.14 7.89 87.24 0.69 12.83 16 12 O -0.54 -14.54 16.48 -3.25 -0.05 -14.59 16 13 C 0.52 14.57 7.85 87.24 0.69 15.26 16 14 O -0.51 -15.38 13.60 -3.35 -0.05 -15.43 16 15 N -0.60 -19.51 5.43 -308.90 -1.68 -21.18 16 16 C 0.26 10.30 8.10 133.40 1.08 11.38 16 17 C -0.29 -10.73 9.60 22.11 0.21 -10.52 16 18 C 0.06 2.31 11.43 83.51 0.95 3.26 16 19 N -0.34 -15.72 3.67 -351.84 -1.29 -17.01 16 20 C 0.27 13.94 6.26 85.63 0.54 14.48 16 21 C -0.55 -31.08 9.24 25.60 0.24 -30.84 16 22 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 23 C 0.02 1.16 5.46 84.65 0.46 1.62 16 24 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 25 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 N -0.34 -16.02 12.42 -54.54 -0.68 -16.70 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.36 6.57 -2.39 -0.02 0.34 16 32 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.55 7.96 -2.39 -0.02 0.53 16 35 H 0.06 0.34 6.56 -2.39 -0.02 0.33 16 36 H 0.06 0.29 6.72 -2.39 -0.02 0.27 16 37 H 0.07 0.35 6.57 -2.39 -0.02 0.34 16 38 H 0.39 2.27 7.19 -74.06 -0.53 1.74 16 39 H 0.08 0.92 6.56 -2.39 -0.02 0.90 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.42 6.46 7.82 -92.71 -0.72 5.74 16 42 H 0.43 12.90 8.29 -92.71 -0.77 12.13 16 43 H 0.18 5.98 5.91 -2.91 -0.02 5.96 16 44 H 0.21 5.96 8.06 -2.91 -0.02 5.93 16 45 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 47 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -69.26 392.32 -0.02 -69.29 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.99 Total: 24.85 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.81 Total: 17.80 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.89 Total: -119.96 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.98 Total: -37.70 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.26 -0.02 -69.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444586952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.104 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds