Wall clock time and date at job start Tue Mar 31 2020 21:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46716 * 55.00469 * 3 2 1 5 5 C 1.52997 * 109.47317 * 295.00560 * 3 2 1 6 6 C 1.52992 * 109.46961 * 175.00098 * 3 2 1 7 7 H 1.09002 * 109.47103 * 60.00608 * 6 3 2 8 8 O 1.42895 * 109.47606 * 300.00395 * 6 3 2 9 9 C 1.53002 * 109.47106 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.47237 * 185.00130 * 9 6 3 11 11 C 1.34781 * 119.99929 * 179.97438 * 10 9 6 12 12 O 1.21361 * 119.99716 * 0.02562 * 11 10 9 13 13 C 1.49336 * 120.00048 * 179.97438 * 11 10 9 14 14 O 1.21389 * 119.99769 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00375 * 180.02562 * 13 11 10 16 16 C 1.39932 * 120.00306 * 180.02562 * 15 13 11 17 17 C 1.40457 * 125.98236 * 359.71406 * 16 15 13 18 18 C 1.35214 * 107.86883 * 179.86436 * 17 16 15 19 19 N 1.34991 * 107.87259 * 0.39585 * 18 17 16 20 20 C 1.46494 * 125.96675 * 179.72877 * 19 18 17 21 21 C 1.50701 * 109.47155 * 124.99862 * 20 19 18 22 22 H 1.07994 * 120.00082 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99899 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99914 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47222 * 90.00246 * 25 23 21 27 27 H 1.48496 * 109.47135 * 209.99733 * 25 23 21 28 28 H 1.48502 * 109.47474 * 330.00306 * 25 23 21 29 29 N 1.31273 * 125.97822 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.46584 * 299.99168 * 1 2 3 31 31 H 1.08999 * 109.47123 * 59.99430 * 1 2 3 32 32 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46782 * 240.00033 * 2 1 3 34 34 H 1.08997 * 109.47391 * 120.01028 * 2 1 3 35 35 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 36 36 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 38 38 H 0.96700 * 113.99916 * 300.00058 * 8 6 3 39 39 H 1.08999 * 109.47029 * 304.99998 * 9 6 3 40 40 H 1.08996 * 109.47572 * 64.99941 * 9 6 3 41 41 H 0.96998 * 120.00102 * 0.02562 * 10 9 6 42 42 H 0.97008 * 119.99832 * 359.97438 * 15 13 11 43 43 H 1.08001 * 126.06127 * 0.02562 * 17 16 15 44 44 H 1.07995 * 126.06009 * 180.10673 * 18 17 16 45 45 H 1.08998 * 109.47350 * 244.99938 * 20 19 18 46 46 H 1.09007 * 109.47690 * 4.99868 * 20 19 18 47 47 H 0.97003 * 119.99652 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 1 3.9994 0.9053 -0.7162 8 8 3.9430 0.8053 1.3466 9 6 4.0749 2.8867 0.1263 10 7 5.5399 2.8867 0.1263 11 6 6.2137 4.0540 0.1263 12 8 5.6069 5.1050 0.1268 13 6 7.7071 4.0540 0.1268 14 8 8.3140 3.0028 0.1268 15 7 8.3810 5.2212 0.1273 16 6 9.7803 5.2212 0.1273 17 6 10.6056 4.0846 0.1324 18 6 11.8907 4.5050 0.1274 19 7 11.8850 5.8549 0.1283 20 6 13.0671 6.7203 0.1296 21 6 12.9918 7.6753 -1.0337 22 1 12.1476 7.6414 -1.7064 23 6 14.0001 8.5932 -1.2385 24 7 13.9341 9.4270 -2.2534 25 14 15.4591 8.6533 -0.0737 26 1 16.5247 7.7445 -0.5676 27 1 15.9834 10.0411 -0.0083 28 1 15.0293 8.2222 1.2808 29 7 10.5515 6.2835 0.1282 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5140 0.8898 35 1 2.0698 1.5876 -2.1491 36 1 1.9983 3.1544 -1.3070 37 1 0.5489 2.1253 -1.3968 38 1 3.5908 1.2324 2.1395 39 1 3.7115 3.4010 -0.7634 40 1 3.7116 3.4002 1.0165 41 1 6.0249 2.0467 0.1255 42 1 7.8960 6.0613 0.1270 43 1 10.2726 3.0572 0.1367 44 1 12.7663 3.8729 0.1278 45 1 13.1031 7.2847 1.0613 46 1 13.9652 6.1090 0.0402 47 1 14.6436 10.0725 -2.3977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444586953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:16 Heat of formation + Delta-G solvation = -44.577213 kcal Electronic energy + Delta-G solvation = -28187.329660 eV Core-core repulsion = 23986.205524 eV Total energy + Delta-G solvation = -4201.124137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15199 -40.35407 -39.29694 -38.34626 -35.66375 -35.30807 -34.47484 -33.29625 -31.34914 -31.16006 -29.51838 -28.44540 -27.38163 -26.04124 -24.73500 -22.71347 -22.33375 -21.45484 -20.86052 -20.27747 -19.75248 -18.49262 -17.40456 -17.09553 -16.84577 -16.53243 -16.41703 -15.99425 -15.45531 -15.30735 -15.17297 -14.73887 -14.55731 -14.33012 -14.15647 -13.90487 -13.65787 -13.36739 -13.21153 -12.86325 -12.58875 -12.42592 -12.40293 -12.23164 -12.22605 -12.06619 -11.76530 -11.63418 -11.19379 -11.15369 -10.98352 -10.78582 -10.73056 -10.45575 -10.11355 -10.05370 -9.63014 -9.58997 -9.55576 -8.78312 -8.30535 -7.65504 -6.24931 -4.27806 1.16406 1.98710 2.57829 2.97075 3.06355 3.15048 3.21334 3.24645 3.60702 3.70232 3.84481 3.97885 4.21394 4.22610 4.33786 4.36758 4.59719 4.65486 4.87826 4.94937 5.02206 5.04194 5.07506 5.20843 5.32147 5.32779 5.45719 5.51358 5.53211 5.60208 5.62059 5.80792 5.84575 5.91380 6.01176 6.23077 6.32398 6.38740 6.60705 6.83754 7.07318 7.16762 7.19167 7.35302 7.59790 7.73181 7.90784 8.29851 8.45232 8.84511 9.29476 10.87693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.001664 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.887187 B =16825.040361 C =17274.861435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.119 4.119 4 H 0.077 0.923 5 C -0.156 4.156 6 C 0.099 3.901 7 H 0.109 0.891 8 O -0.554 6.554 9 C 0.082 3.918 10 N -0.695 5.695 11 C 0.516 3.484 12 O -0.516 6.516 13 C 0.513 3.487 14 O -0.498 6.498 15 N -0.598 5.598 16 C 0.254 3.746 17 C -0.282 4.282 18 C 0.053 3.947 19 N -0.314 5.314 20 C 0.231 3.769 21 C -0.537 4.537 22 H 0.086 0.914 23 C 0.077 3.923 24 N -0.886 5.886 25 Si 0.873 3.127 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 N -0.287 5.287 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.377 0.623 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.418 0.582 42 H 0.424 0.576 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.102 -19.057 6.246 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.138 4.138 4 H 0.095 0.905 5 C -0.214 4.214 6 C 0.039 3.961 7 H 0.127 0.873 8 O -0.359 6.359 9 C -0.042 4.042 10 N -0.349 5.349 11 C 0.296 3.704 12 O -0.391 6.391 13 C 0.293 3.707 14 O -0.371 6.371 15 N -0.247 5.247 16 C 0.000 4.000 17 C -0.313 4.313 18 C -0.096 4.096 19 N -0.096 5.096 20 C 0.112 3.888 21 C -0.575 4.575 22 H 0.104 0.896 23 C -0.127 4.127 24 N -0.523 5.523 25 Si 0.699 3.301 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.189 1.189 29 N -0.118 5.118 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.225 0.775 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.255 0.745 42 H 0.262 0.738 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.572 -17.942 5.739 30.174 hybrid contribution 0.515 -0.121 0.738 0.908 sum -23.057 -18.063 6.477 29.997 Atomic orbital electron populations 1.21832 0.95796 1.01700 1.01861 1.21495 0.95719 0.95307 1.02837 1.21802 0.94617 0.97746 0.99679 0.90473 1.21974 1.02165 1.00671 0.96540 1.22255 0.94015 0.91263 0.88563 0.87344 1.86630 1.76893 1.56901 1.15524 1.22355 0.79406 0.98398 1.03990 1.45584 1.07193 1.09017 1.73129 1.19888 0.87951 0.84566 0.78024 1.90799 1.69707 1.30954 1.47687 1.19897 0.88134 0.83962 0.78713 1.90716 1.68964 1.30843 1.46592 1.41997 1.03293 1.09876 1.69524 1.19018 0.83151 0.93549 1.04234 1.21542 0.90490 0.99721 1.19558 1.22577 0.99161 0.85541 1.02314 1.48693 1.04465 1.04474 1.51993 1.20095 0.78802 0.90148 0.99741 1.21103 1.09247 1.16525 1.10646 0.89598 1.24829 0.97865 0.94762 0.95233 1.69873 1.33724 1.20047 1.28680 0.86904 0.83092 0.78364 0.81724 1.19690 1.20493 1.18861 1.77468 0.87915 1.19597 1.26802 0.92816 0.92507 0.92734 0.91874 0.91053 0.92169 0.91954 0.91793 0.77517 0.89451 0.90500 0.74482 0.73845 0.81953 0.81114 0.93866 0.93164 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.67 37.16 0.36 -0.26 16 2 C -0.12 -0.51 5.33 -26.73 -0.14 -0.65 16 3 C -0.12 -0.47 2.16 -90.63 -0.20 -0.67 16 4 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 5 C -0.16 -0.64 8.60 37.16 0.32 -0.32 16 6 C 0.10 0.49 2.58 -26.73 -0.07 0.42 16 7 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 8 O -0.55 -3.17 12.52 -35.23 -0.44 -3.61 16 9 C 0.08 0.53 5.10 -4.04 -0.02 0.51 16 10 N -0.69 -6.23 5.50 -60.77 -0.33 -6.57 16 11 C 0.52 6.31 7.89 -11.64 -0.09 6.22 16 12 O -0.52 -7.30 16.48 5.49 0.09 -7.21 16 13 C 0.51 7.46 7.85 -11.64 -0.09 7.37 16 14 O -0.50 -7.80 13.60 5.46 0.07 -7.73 16 15 N -0.60 -9.77 5.43 -11.58 -0.06 -9.83 16 16 C 0.25 5.02 8.10 -154.55 -1.25 3.77 16 17 C -0.28 -5.26 9.60 -39.82 -0.38 -5.64 16 18 C 0.05 0.99 11.43 -17.24 -0.20 0.80 16 19 N -0.31 -7.00 3.67 -62.56 -0.23 -7.23 16 20 C 0.23 5.39 5.33 -5.20 -0.03 5.37 16 21 C -0.54 -15.08 9.79 -34.44 -0.34 -15.42 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 25 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 29 N -0.29 -6.56 12.42 31.41 0.39 -6.17 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.36 7.54 -51.93 -0.39 -0.03 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.27 6.32 -51.93 -0.33 -0.06 16 37 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 38 H 0.38 1.10 9.04 45.56 0.41 1.51 16 39 H 0.09 0.58 6.18 -51.93 -0.32 0.26 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.42 3.55 7.94 -40.82 -0.32 3.23 16 42 H 0.42 6.39 8.29 -40.82 -0.34 6.05 16 43 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 44 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 46 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -34.17 391.16 -6.76 -40.92 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.02 Total: 8.39 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.23 Total: 3.55 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.54 Total: -55.51 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.28 Total: -18.55 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.17 -6.76 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444586953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.655 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds