Wall clock time and date at job start Tue Mar 31 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46716 * 55.00469 * 3 2 1 5 5 C 1.52997 * 109.47317 * 295.00560 * 3 2 1 6 6 C 1.52992 * 109.46961 * 175.00098 * 3 2 1 7 7 H 1.09002 * 109.47103 * 60.00608 * 6 3 2 8 8 O 1.42895 * 109.47606 * 300.00395 * 6 3 2 9 9 C 1.53002 * 109.47106 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.47237 * 185.00130 * 9 6 3 11 11 C 1.34781 * 119.99929 * 179.97438 * 10 9 6 12 12 O 1.21361 * 119.99716 * 0.02562 * 11 10 9 13 13 C 1.49336 * 120.00048 * 179.97438 * 11 10 9 14 14 O 1.21389 * 119.99769 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00375 * 180.02562 * 13 11 10 16 16 C 1.39932 * 120.00306 * 180.02562 * 15 13 11 17 17 C 1.40457 * 125.98236 * 359.71406 * 16 15 13 18 18 C 1.35214 * 107.86883 * 179.86436 * 17 16 15 19 19 N 1.34991 * 107.87259 * 0.39585 * 18 17 16 20 20 C 1.46494 * 125.96675 * 179.72877 * 19 18 17 21 21 C 1.50701 * 109.47155 * 124.99862 * 20 19 18 22 22 H 1.07994 * 120.00082 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99899 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99914 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47222 * 90.00246 * 25 23 21 27 27 H 1.48496 * 109.47135 * 209.99733 * 25 23 21 28 28 H 1.48502 * 109.47474 * 330.00306 * 25 23 21 29 29 N 1.31273 * 125.97822 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.46584 * 299.99168 * 1 2 3 31 31 H 1.08999 * 109.47123 * 59.99430 * 1 2 3 32 32 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46782 * 240.00033 * 2 1 3 34 34 H 1.08997 * 109.47391 * 120.01028 * 2 1 3 35 35 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 36 36 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 38 38 H 0.96700 * 113.99916 * 300.00058 * 8 6 3 39 39 H 1.08999 * 109.47029 * 304.99998 * 9 6 3 40 40 H 1.08996 * 109.47572 * 64.99941 * 9 6 3 41 41 H 0.96998 * 120.00102 * 0.02562 * 10 9 6 42 42 H 0.97008 * 119.99832 * 359.97438 * 15 13 11 43 43 H 1.08001 * 126.06127 * 0.02562 * 17 16 15 44 44 H 1.07995 * 126.06009 * 180.10673 * 18 17 16 45 45 H 1.08998 * 109.47350 * 244.99938 * 20 19 18 46 46 H 1.09007 * 109.47690 * 4.99868 * 20 19 18 47 47 H 0.97003 * 119.99652 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 1 3.9994 0.9053 -0.7162 8 8 3.9430 0.8053 1.3466 9 6 4.0749 2.8867 0.1263 10 7 5.5399 2.8867 0.1263 11 6 6.2137 4.0540 0.1263 12 8 5.6069 5.1050 0.1268 13 6 7.7071 4.0540 0.1268 14 8 8.3140 3.0028 0.1268 15 7 8.3810 5.2212 0.1273 16 6 9.7803 5.2212 0.1273 17 6 10.6056 4.0846 0.1324 18 6 11.8907 4.5050 0.1274 19 7 11.8850 5.8549 0.1283 20 6 13.0671 6.7203 0.1296 21 6 12.9918 7.6753 -1.0337 22 1 12.1476 7.6414 -1.7064 23 6 14.0001 8.5932 -1.2385 24 7 13.9341 9.4270 -2.2534 25 14 15.4591 8.6533 -0.0737 26 1 16.5247 7.7445 -0.5676 27 1 15.9834 10.0411 -0.0083 28 1 15.0293 8.2222 1.2808 29 7 10.5515 6.2835 0.1282 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5140 0.8898 35 1 2.0698 1.5876 -2.1491 36 1 1.9983 3.1544 -1.3070 37 1 0.5489 2.1253 -1.3968 38 1 3.5908 1.2324 2.1395 39 1 3.7115 3.4010 -0.7634 40 1 3.7116 3.4002 1.0165 41 1 6.0249 2.0467 0.1255 42 1 7.8960 6.0613 0.1270 43 1 10.2726 3.0572 0.1367 44 1 12.7663 3.8729 0.1278 45 1 13.1031 7.2847 1.0613 46 1 13.9652 6.1090 0.0402 47 1 14.6436 10.0725 -2.3977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444586953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:15 Heat of formation + Delta-G solvation = -72.036543 kcal Electronic energy + Delta-G solvation = -28188.520386 eV Core-core repulsion = 23986.205524 eV Total energy + Delta-G solvation = -4202.314862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47579 -41.57279 -40.05989 -39.26406 -36.69894 -35.94490 -35.51231 -35.10180 -33.14887 -31.62285 -31.06556 -29.40324 -28.75589 -26.73208 -25.67154 -24.28114 -23.07934 -22.58667 -21.86631 -21.27450 -20.90309 -19.60117 -19.12726 -18.32188 -17.86034 -17.67970 -17.32051 -16.92254 -16.81293 -16.26352 -16.14244 -15.79618 -15.52916 -15.34322 -15.00795 -14.90041 -14.84363 -14.45321 -14.38256 -13.95280 -13.89574 -13.83511 -13.34303 -13.11009 -12.82251 -12.75878 -12.57005 -12.47931 -12.41401 -12.37556 -12.10707 -11.83636 -11.70061 -11.50370 -11.48869 -11.34147 -11.00776 -10.86903 -10.68218 -10.37671 -9.85752 -9.21522 -8.37490 -6.48356 0.02484 0.83415 1.11581 1.37110 1.40338 1.49964 1.72354 1.81170 2.23998 2.29436 2.54711 2.95269 3.20758 3.43087 3.53605 3.85747 3.86752 3.96960 4.16128 4.18274 4.25725 4.50178 4.55634 4.59879 4.63349 4.65575 4.71972 4.81452 4.82614 4.84010 4.89896 4.94925 5.06575 5.12770 5.18819 5.20545 5.23570 5.29688 5.50279 5.56796 5.73798 5.77467 5.97859 6.11557 6.37882 6.52743 6.57779 6.74818 6.81303 6.92285 7.14701 8.79677 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.001664 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.887187 B =16825.040361 C =17274.861435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.112 4.112 4 H 0.085 0.915 5 C -0.157 4.157 6 C 0.109 3.891 7 H 0.107 0.893 8 O -0.567 6.567 9 C 0.080 3.920 10 N -0.676 5.676 11 C 0.523 3.477 12 O -0.537 6.537 13 C 0.516 3.484 14 O -0.506 6.506 15 N -0.602 5.602 16 C 0.258 3.742 17 C -0.289 4.289 18 C 0.065 3.935 19 N -0.339 5.339 20 C 0.238 3.762 21 C -0.550 4.550 22 H 0.025 0.975 23 C 0.014 3.986 24 N -0.942 5.942 25 Si 0.957 3.043 26 H -0.252 1.252 27 H -0.282 1.282 28 H -0.238 1.238 29 N -0.344 5.344 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.389 0.611 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.422 0.578 42 H 0.427 0.573 43 H 0.177 0.823 44 H 0.217 0.783 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.763 -21.164 7.959 32.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.131 4.131 4 H 0.104 0.896 5 C -0.214 4.214 6 C 0.049 3.951 7 H 0.125 0.875 8 O -0.374 6.374 9 C -0.043 4.043 10 N -0.329 5.329 11 C 0.302 3.698 12 O -0.415 6.415 13 C 0.297 3.703 14 O -0.380 6.380 15 N -0.252 5.252 16 C 0.003 3.997 17 C -0.320 4.320 18 C -0.083 4.083 19 N -0.121 5.121 20 C 0.119 3.881 21 C -0.588 4.588 22 H 0.044 0.956 23 C -0.184 4.184 24 N -0.581 5.581 25 Si 0.777 3.223 26 H -0.176 1.176 27 H -0.208 1.208 28 H -0.161 1.161 29 N -0.175 5.175 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.239 0.761 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.260 0.740 42 H 0.265 0.735 43 H 0.194 0.806 44 H 0.234 0.766 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.290 -20.114 7.465 31.665 hybrid contribution 0.215 0.428 0.135 0.498 sum -23.075 -19.685 7.600 31.269 Atomic orbital electron populations 1.21825 0.95454 1.01767 1.02076 1.21461 0.95981 0.95339 1.02361 1.21736 0.93736 0.97645 0.99989 0.89631 1.21982 1.02448 1.00475 0.96521 1.22163 0.94537 0.89935 0.88447 0.87535 1.86608 1.77248 1.57344 1.16244 1.22589 0.77499 0.99751 1.04457 1.45610 1.08289 1.08035 1.71015 1.19433 0.86594 0.85216 0.78557 1.90802 1.69517 1.31796 1.49344 1.20374 0.89222 0.83155 0.77526 1.90690 1.69555 1.31000 1.46714 1.42144 1.02180 1.10854 1.69993 1.19379 0.84492 0.93429 1.02362 1.21799 0.90523 0.99902 1.19744 1.23337 1.00780 0.84373 0.99761 1.48574 1.03930 1.05638 1.54001 1.19938 0.80658 0.90137 0.97414 1.21248 1.07557 1.18475 1.11555 0.95650 1.25940 1.01629 0.93711 0.97161 1.70058 1.35393 1.21312 1.31351 0.85599 0.78229 0.78597 0.79836 1.17565 1.20762 1.16149 1.77376 0.88925 1.21642 1.29518 0.92557 0.92323 0.92789 0.92287 0.91590 0.92273 0.92178 0.91409 0.76093 0.89217 0.89797 0.73964 0.73474 0.80593 0.76643 0.93536 0.89589 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 71.98 0.70 -0.33 16 2 C -0.11 -0.84 5.33 30.60 0.16 -0.68 16 3 C -0.11 -0.70 2.16 -10.80 -0.02 -0.72 16 4 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 5 C -0.16 -1.06 8.60 71.98 0.62 -0.44 16 6 C 0.11 0.89 2.58 30.59 0.08 0.97 16 7 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 8 O -0.57 -5.45 12.52 -148.98 -1.87 -7.32 16 9 C 0.08 0.91 5.10 86.38 0.44 1.35 16 10 N -0.68 -11.15 5.50 -464.52 -2.55 -13.70 16 11 C 0.52 12.34 7.89 87.23 0.69 13.03 16 12 O -0.54 -14.90 16.48 -3.28 -0.05 -14.96 16 13 C 0.52 14.71 7.85 87.23 0.69 15.40 16 14 O -0.51 -15.26 13.60 -3.37 -0.05 -15.30 16 15 N -0.60 -19.86 5.43 -308.90 -1.68 -21.53 16 16 C 0.26 10.27 8.10 133.40 1.08 11.35 16 17 C -0.29 -10.41 9.60 22.11 0.21 -10.20 16 18 C 0.07 2.30 11.43 83.51 0.95 3.25 16 19 N -0.34 -14.96 3.67 -351.85 -1.29 -16.25 16 20 C 0.24 10.87 5.33 85.63 0.46 11.32 16 21 C -0.55 -31.76 9.79 25.60 0.25 -31.50 16 22 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 23 C 0.01 0.82 5.47 84.66 0.46 1.28 16 24 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 25 Si 0.96 40.41 27.47 68.60 1.88 42.30 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 29 N -0.34 -16.11 12.42 -54.54 -0.68 -16.79 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.37 6.56 -2.39 -0.02 0.36 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.07 0.57 7.54 -2.39 -0.02 0.55 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.44 6.32 -2.39 -0.02 0.42 16 37 H 0.07 0.42 6.57 -2.38 -0.02 0.40 16 38 H 0.39 1.49 9.04 -74.06 -0.67 0.82 16 39 H 0.09 1.06 6.18 -2.39 -0.01 1.04 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.42 6.47 7.94 -92.71 -0.74 5.73 16 42 H 0.43 13.29 8.29 -92.70 -0.77 12.52 16 43 H 0.18 5.81 5.91 -2.91 -0.02 5.79 16 44 H 0.22 5.30 8.06 -2.91 -0.02 5.28 16 45 H 0.05 2.08 7.20 -2.39 -0.02 2.07 16 46 H 0.09 3.31 7.50 -2.38 -0.02 3.29 16 47 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.30 391.16 -0.41 -77.72 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -1.20 Total: 29.70 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.76 Total: 14.07 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -5.90 Total: -126.21 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.97 Total: -37.58 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.30 kcal Total: -77.30 -0.41 -77.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444586953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.679 kcal (2) G-P(sol) polarization free energy of solvation -77.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds