Wall clock time and date at job start Tue Mar 31 2020 21:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47369 * 2 1 4 4 C 1.52998 * 109.47054 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47248 * 178.90799 * 4 3 2 6 6 H 1.08997 * 109.47264 * 174.07775 * 5 4 3 7 7 N 1.46904 * 109.46710 * 294.07212 * 5 4 3 8 8 C 1.46895 * 110.99934 * 274.76819 * 7 5 4 9 9 C 1.50703 * 109.47130 * 177.46009 * 8 7 5 10 10 O 1.21288 * 119.99920 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.37098 * 120.00069 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99776 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00251 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99812 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99728 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47336 * 89.99980 * 16 14 12 18 18 H 1.48502 * 109.47082 * 209.99770 * 16 14 12 19 19 H 1.48497 * 109.47338 * 329.99675 * 16 14 12 20 20 C 1.50696 * 109.47087 * 54.06793 * 5 4 3 21 21 O 1.21277 * 120.00252 * 239.99969 * 20 5 4 22 22 N 1.34774 * 119.99636 * 60.01025 * 20 5 4 23 23 C 1.39513 * 119.99767 * 179.97438 * 22 20 5 24 24 C 1.42021 * 126.89029 * 359.97438 * 23 22 20 25 25 C 1.35251 * 103.95370 * 179.97438 * 24 23 22 26 26 C 1.50694 * 126.69865 * 180.02562 * 25 24 23 27 27 O 1.34095 * 106.61043 * 359.97438 * 25 24 23 28 28 N 1.20919 * 111.74232 * 359.72782 * 27 25 24 29 29 H 1.08989 * 109.47357 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47179 * 299.99826 * 1 2 3 31 31 H 1.09007 * 109.47045 * 59.99444 * 1 2 3 32 32 H 1.09000 * 109.47179 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47338 * 120.00518 * 2 1 3 34 34 H 1.08998 * 109.46921 * 300.00164 * 3 2 1 35 35 H 1.08999 * 109.47031 * 60.00472 * 3 2 1 36 36 H 1.09010 * 109.47016 * 298.90379 * 4 3 2 37 37 H 1.08996 * 109.47216 * 58.90035 * 4 3 2 38 38 H 1.00904 * 110.99722 * 38.72043 * 7 5 4 39 39 H 1.09002 * 109.47243 * 297.45781 * 8 7 5 40 40 H 1.09001 * 109.47481 * 57.45750 * 8 7 5 41 41 H 0.96999 * 120.00015 * 0.02562 * 11 9 8 42 42 H 0.97007 * 119.99555 * 180.02562 * 15 14 12 43 43 H 0.96996 * 120.00573 * 359.97438 * 22 20 5 44 44 H 1.07997 * 128.02843 * 359.97438 * 24 23 22 45 45 H 1.08997 * 109.47286 * 89.99792 * 26 25 24 46 46 H 1.09000 * 109.47885 * 210.00098 * 26 25 24 47 47 H 1.09001 * 109.47253 * 330.00294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8847 -0.0281 6 1 5.1650 2.8884 0.0774 7 7 3.7102 3.5106 -1.3047 8 6 4.7033 3.2115 -2.3449 9 6 4.2594 3.8163 -3.6519 10 8 3.2180 4.4351 -3.7111 11 7 5.0198 3.6696 -4.7550 12 6 4.6157 4.2193 -5.9442 13 1 3.6883 4.7704 -5.9969 14 6 5.3998 4.0686 -7.0814 15 7 5.0122 4.5951 -8.2213 16 14 7.0041 3.1162 -6.9900 17 1 6.7462 1.6829 -7.2802 18 1 7.9597 3.6592 -7.9886 19 1 7.5820 3.2494 -5.6286 20 6 3.4620 3.6578 1.1081 21 8 2.7806 4.6341 0.8774 22 7 3.6667 3.2644 2.3808 23 6 3.0950 3.9805 3.4328 24 6 2.2780 5.1378 3.3316 25 6 1.9840 5.4428 4.6161 26 6 1.1370 6.5924 5.0975 27 8 2.5925 4.5219 5.3776 28 7 3.1982 3.7169 4.7090 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.9337 0.9455 0.8989 37 1 3.9330 0.9118 -0.8808 38 1 2.7867 3.2244 -1.5934 39 1 5.6673 3.6323 -2.0586 40 1 4.7975 2.1315 -2.4577 41 1 5.8525 3.1744 -4.7078 42 1 5.5594 4.4895 -9.0152 43 1 4.2116 2.4834 2.5654 44 1 1.9643 5.6545 2.4367 45 1 0.0965 6.2744 5.1635 46 1 1.4823 6.9115 6.0808 47 1 1.2192 7.4229 4.3963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507214947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:25 Heat of formation + Delta-G solvation = -8.473122 kcal Electronic energy + Delta-G solvation = -29302.093658 eV Core-core repulsion = 25102.535112 eV Total energy + Delta-G solvation = -4199.558546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.03031 -40.57453 -38.54291 -37.04998 -35.71095 -34.66227 -33.92556 -33.80708 -32.33753 -31.69375 -30.75701 -28.05834 -27.75346 -25.95183 -24.13370 -23.85017 -22.93028 -21.70174 -21.20921 -20.09265 -19.46338 -18.50033 -17.85962 -17.55533 -17.16397 -16.74643 -16.07591 -15.98106 -15.77800 -15.01950 -14.79555 -14.49710 -14.35624 -13.88784 -13.83324 -13.78041 -13.70735 -13.55025 -13.26826 -13.03527 -12.74863 -12.66986 -12.48864 -12.43564 -12.07960 -11.93788 -11.80925 -11.48351 -11.43321 -11.25990 -11.19607 -10.91909 -10.76147 -10.61941 -10.04702 -9.98352 -9.59594 -9.59405 -9.01760 -8.64482 -8.27293 -8.19292 -6.32597 -3.84226 1.20849 1.84925 2.26638 2.70086 2.94401 3.00489 3.04196 3.13302 3.70038 3.90706 4.07714 4.09556 4.33713 4.37756 4.55695 4.68602 4.72276 4.81032 4.88533 5.01199 5.01336 5.03139 5.08843 5.11502 5.19517 5.31179 5.32943 5.43223 5.52966 5.55698 5.60711 5.63873 5.72468 5.76825 5.79395 5.86686 5.93280 6.02089 6.12190 6.21989 6.73840 6.99324 7.43418 7.55696 7.85795 8.11329 8.12369 8.57394 8.93167 9.40057 9.79623 10.80467 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.002438 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.970926 B =11481.657215 C =12412.350302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.128 4.128 4 C -0.152 4.152 5 C 0.077 3.923 6 H 0.111 0.889 7 N -0.644 5.644 8 C 0.048 3.952 9 C 0.449 3.551 10 O -0.560 6.560 11 N -0.589 5.589 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.528 3.472 21 O -0.479 6.479 22 N -0.637 5.637 23 C 0.254 3.746 24 C -0.226 4.226 25 C -0.026 4.026 26 C -0.073 4.073 27 O 0.091 5.909 28 N -0.397 5.397 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.361 0.639 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.416 0.584 44 H 0.191 0.809 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -7.322 25.711 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.191 4.191 5 C -0.037 4.037 6 H 0.129 0.871 7 N -0.279 5.279 8 C -0.085 4.085 9 C 0.235 3.765 10 O -0.442 6.442 11 N -0.229 5.229 12 C -0.433 4.433 13 H 0.138 0.862 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.195 1.195 20 C 0.314 3.686 21 O -0.348 6.348 22 N -0.291 5.291 23 C 0.005 3.995 24 C -0.249 4.249 25 C -0.090 4.090 26 C -0.131 4.131 27 O 0.032 5.968 28 N -0.114 5.114 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.185 0.815 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.252 0.748 44 H 0.208 0.792 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.830 -6.421 26.026 26.955 hybrid contribution 1.310 -1.664 -0.858 2.285 sum -1.520 -8.085 25.168 26.479 Atomic orbital electron populations 1.21774 0.95725 1.01545 1.02108 1.21479 0.96155 0.96229 1.01923 1.21711 0.94340 0.97585 1.02927 1.22358 0.97156 0.95788 1.03815 1.21454 1.00891 0.91261 0.90113 0.87110 1.59746 1.06551 1.61502 1.00097 1.21783 0.96413 0.98577 0.91684 1.19596 0.86614 0.85943 0.84383 1.90595 1.24733 1.44039 1.84816 1.42183 1.21348 1.50139 1.09229 1.19433 1.08877 1.31469 0.83560 0.86241 1.25044 0.98287 0.97734 0.95125 1.69625 1.38547 1.43975 0.99884 0.86667 0.83673 0.80645 0.78371 1.19670 1.20164 1.19472 1.20890 0.80717 0.85072 0.81960 1.90691 1.35782 1.25254 1.83024 1.42726 1.51885 1.30978 1.03517 1.20562 0.97639 0.93973 0.87363 1.22793 1.04107 0.99013 0.98987 1.24445 0.99056 0.95146 0.90359 1.20343 0.97567 0.92119 1.03023 1.84777 1.49256 1.29725 1.33056 1.74018 1.19650 1.14642 1.03137 0.92789 0.92907 0.92337 0.91765 0.92214 0.90920 0.91935 0.90855 0.89874 0.81532 0.89197 0.93304 0.79701 0.91596 0.74797 0.79172 0.89337 0.89840 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.19 16 3 C -0.13 -1.25 4.69 -26.73 -0.13 -1.38 16 4 C -0.15 -1.26 4.95 -26.73 -0.13 -1.39 16 5 C 0.08 0.83 2.76 -68.86 -0.19 0.64 16 6 H 0.11 0.94 7.83 -51.93 -0.41 0.53 16 7 N -0.64 -9.78 5.41 -109.22 -0.59 -10.37 16 8 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 9 C 0.45 9.99 7.81 -10.98 -0.09 9.91 16 10 O -0.56 -15.05 15.72 5.55 0.09 -14.96 16 11 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 12 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 13 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 16 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 20 C 0.53 6.50 5.67 -10.99 -0.06 6.44 16 21 O -0.48 -7.75 13.71 5.56 0.08 -7.67 16 22 N -0.64 -6.57 5.33 -11.43 -0.06 -6.63 16 23 C 0.25 3.10 8.18 -154.81 -1.27 1.84 16 24 C -0.23 -2.70 9.79 -39.20 -0.38 -3.08 16 25 C -0.03 -0.25 7.48 -35.38 -0.26 -0.52 16 26 C -0.07 -0.39 10.45 36.00 0.38 -0.01 16 27 O 0.09 1.01 11.19 17.03 0.19 1.20 16 28 N -0.40 -4.88 12.10 31.19 0.38 -4.50 16 29 H 0.05 0.42 8.14 -51.94 -0.42 0.00 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 35 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 36 H 0.07 0.43 7.74 -51.92 -0.40 0.03 16 37 H 0.08 0.67 7.32 -51.93 -0.38 0.29 16 38 H 0.36 5.90 6.20 -39.29 -0.24 5.66 16 39 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 40 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 41 H 0.37 7.49 5.76 -40.82 -0.24 7.26 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.42 3.06 8.36 -40.82 -0.34 2.72 16 44 H 0.19 2.48 6.22 -52.49 -0.33 2.15 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -35.80 389.42 -7.03 -42.82 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.78 Total: 15.27 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.20 Total: 3.27 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.44 Total: -60.15 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.35 Total: -21.43 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.80 -7.03 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507214947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.351 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds