Wall clock time and date at job start Tue Mar 31 2020 21:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47369 * 2 1 4 4 C 1.52998 * 109.47054 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47248 * 178.90799 * 4 3 2 6 6 H 1.08997 * 109.47264 * 174.07775 * 5 4 3 7 7 N 1.46904 * 109.46710 * 294.07212 * 5 4 3 8 8 C 1.46895 * 110.99934 * 274.76819 * 7 5 4 9 9 C 1.50703 * 109.47130 * 177.46009 * 8 7 5 10 10 O 1.21288 * 119.99920 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.37098 * 120.00069 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99776 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00251 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99812 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99728 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47336 * 89.99980 * 16 14 12 18 18 H 1.48502 * 109.47082 * 209.99770 * 16 14 12 19 19 H 1.48497 * 109.47338 * 329.99675 * 16 14 12 20 20 C 1.50696 * 109.47087 * 54.06793 * 5 4 3 21 21 O 1.21277 * 120.00252 * 239.99969 * 20 5 4 22 22 N 1.34774 * 119.99636 * 60.01025 * 20 5 4 23 23 C 1.39513 * 119.99767 * 179.97438 * 22 20 5 24 24 C 1.42021 * 126.89029 * 359.97438 * 23 22 20 25 25 C 1.35251 * 103.95370 * 179.97438 * 24 23 22 26 26 C 1.50694 * 126.69865 * 180.02562 * 25 24 23 27 27 O 1.34095 * 106.61043 * 359.97438 * 25 24 23 28 28 N 1.20919 * 111.74232 * 359.72782 * 27 25 24 29 29 H 1.08989 * 109.47357 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47179 * 299.99826 * 1 2 3 31 31 H 1.09007 * 109.47045 * 59.99444 * 1 2 3 32 32 H 1.09000 * 109.47179 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47338 * 120.00518 * 2 1 3 34 34 H 1.08998 * 109.46921 * 300.00164 * 3 2 1 35 35 H 1.08999 * 109.47031 * 60.00472 * 3 2 1 36 36 H 1.09010 * 109.47016 * 298.90379 * 4 3 2 37 37 H 1.08996 * 109.47216 * 58.90035 * 4 3 2 38 38 H 1.00904 * 110.99722 * 38.72043 * 7 5 4 39 39 H 1.09002 * 109.47243 * 297.45781 * 8 7 5 40 40 H 1.09001 * 109.47481 * 57.45750 * 8 7 5 41 41 H 0.96999 * 120.00015 * 0.02562 * 11 9 8 42 42 H 0.97007 * 119.99555 * 180.02562 * 15 14 12 43 43 H 0.96996 * 120.00573 * 359.97438 * 22 20 5 44 44 H 1.07997 * 128.02843 * 359.97438 * 24 23 22 45 45 H 1.08997 * 109.47286 * 89.99792 * 26 25 24 46 46 H 1.09000 * 109.47885 * 210.00098 * 26 25 24 47 47 H 1.09001 * 109.47253 * 330.00294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8847 -0.0281 6 1 5.1650 2.8884 0.0774 7 7 3.7102 3.5106 -1.3047 8 6 4.7033 3.2115 -2.3449 9 6 4.2594 3.8163 -3.6519 10 8 3.2180 4.4351 -3.7111 11 7 5.0198 3.6696 -4.7550 12 6 4.6157 4.2193 -5.9442 13 1 3.6883 4.7704 -5.9969 14 6 5.3998 4.0686 -7.0814 15 7 5.0122 4.5951 -8.2213 16 14 7.0041 3.1162 -6.9900 17 1 6.7462 1.6829 -7.2802 18 1 7.9597 3.6592 -7.9886 19 1 7.5820 3.2494 -5.6286 20 6 3.4620 3.6578 1.1081 21 8 2.7806 4.6341 0.8774 22 7 3.6667 3.2644 2.3808 23 6 3.0950 3.9805 3.4328 24 6 2.2780 5.1378 3.3316 25 6 1.9840 5.4428 4.6161 26 6 1.1370 6.5924 5.0975 27 8 2.5925 4.5219 5.3776 28 7 3.1982 3.7169 4.7090 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.9337 0.9455 0.8989 37 1 3.9330 0.9118 -0.8808 38 1 2.7867 3.2244 -1.5934 39 1 5.6673 3.6323 -2.0586 40 1 4.7975 2.1315 -2.4577 41 1 5.8525 3.1744 -4.7078 42 1 5.5594 4.4895 -9.0152 43 1 4.2116 2.4834 2.5654 44 1 1.9643 5.6545 2.4367 45 1 0.0965 6.2744 5.1635 46 1 1.4823 6.9115 6.0808 47 1 1.2192 7.4229 4.3963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507214947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:24 Heat of formation + Delta-G solvation = -36.192202 kcal Electronic energy + Delta-G solvation = -29303.295647 eV Core-core repulsion = 25102.535112 eV Total energy + Delta-G solvation = -4200.760535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.89735 -41.52984 -40.25734 -38.05355 -36.65861 -36.07586 -35.40661 -34.56036 -33.75336 -33.23483 -31.69433 -28.89788 -28.66369 -27.34071 -25.42272 -24.95568 -23.82235 -22.46221 -22.06596 -21.30150 -20.94833 -20.33185 -18.73139 -18.39784 -18.33722 -17.67976 -17.40615 -17.11836 -16.68311 -16.62384 -16.05549 -15.72524 -15.39945 -15.13919 -14.95601 -14.68537 -14.61466 -14.37338 -14.34459 -14.00852 -13.97121 -13.79069 -13.51463 -13.39195 -13.31025 -13.09757 -12.88927 -12.75339 -12.40607 -12.24393 -12.20990 -12.00171 -11.96459 -11.66137 -11.50434 -11.48828 -11.03685 -10.44625 -10.40147 -10.24592 -9.90754 -9.37438 -8.40329 -6.01749 0.37269 0.95089 1.31407 1.37207 1.39549 1.46673 1.79650 1.96544 2.18493 2.24652 2.71167 3.16112 3.23579 3.34484 3.50547 3.66545 3.83974 3.94584 4.00449 4.07853 4.14859 4.27092 4.31166 4.35710 4.39513 4.46123 4.57972 4.71882 4.72025 4.72490 4.76564 4.88624 4.90917 4.96220 5.08993 5.16919 5.19740 5.30889 5.33070 5.40955 5.52210 5.79284 5.96281 6.13108 6.27692 6.60255 6.89019 6.97433 7.25720 7.40219 7.97830 8.77496 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.002438 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.970926 B =11481.657215 C =12412.350302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.143 4.143 5 C 0.082 3.918 6 H 0.147 0.853 7 N -0.674 5.674 8 C 0.063 3.937 9 C 0.446 3.554 10 O -0.617 6.617 11 N -0.588 5.588 12 C -0.329 4.329 13 H 0.052 0.948 14 C -0.018 4.018 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.255 1.255 18 H -0.278 1.278 19 H -0.227 1.227 20 C 0.529 3.471 21 O -0.527 6.527 22 N -0.622 5.622 23 C 0.242 3.758 24 C -0.260 4.260 25 C -0.005 4.005 26 C -0.074 4.074 27 O 0.087 5.913 28 N -0.409 5.409 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.349 0.651 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.391 0.609 42 H 0.279 0.721 43 H 0.431 0.569 44 H 0.174 0.826 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -10.045 28.389 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.165 4.165 4 C -0.182 4.182 5 C -0.031 4.031 6 H 0.164 0.836 7 N -0.308 5.308 8 C -0.068 4.068 9 C 0.234 3.766 10 O -0.501 6.501 11 N -0.230 5.230 12 C -0.458 4.458 13 H 0.070 0.930 14 C -0.216 4.216 15 N -0.577 5.577 16 Si 0.787 3.213 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.150 1.150 20 C 0.316 3.684 21 O -0.399 6.399 22 N -0.276 5.276 23 C -0.007 4.007 24 C -0.283 4.283 25 C -0.069 4.069 26 C -0.131 4.131 27 O 0.030 5.970 28 N -0.128 5.128 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.227 0.773 42 H 0.088 0.912 43 H 0.271 0.729 44 H 0.192 0.808 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.294 -9.183 28.768 30.199 hybrid contribution 0.144 -0.693 -1.624 1.771 sum 0.438 -9.876 27.144 28.888 Atomic orbital electron populations 1.21802 0.96476 1.02004 1.01182 1.21466 0.95553 0.95416 1.02929 1.21665 0.95996 0.97939 1.00858 1.22347 0.95467 0.94225 1.06148 1.21592 1.02670 0.91794 0.87053 0.83585 1.59636 1.06032 1.63473 1.01668 1.21728 0.97055 1.00614 0.87432 1.21008 0.85219 0.84093 0.86268 1.90576 1.27308 1.46158 1.86099 1.41982 1.22469 1.50544 1.08047 1.18986 1.07567 1.32738 0.86526 0.93028 1.26179 1.03242 0.98490 0.93709 1.69821 1.40905 1.45812 1.01138 0.85329 0.76640 0.78815 0.80496 1.17914 1.20306 1.15038 1.21310 0.79904 0.84468 0.82745 1.90690 1.37978 1.27475 1.83733 1.42560 1.51410 1.31062 1.02593 1.20799 0.97851 0.94291 0.87808 1.22761 1.05997 1.00066 0.99523 1.25074 0.97473 0.94826 0.89490 1.20601 0.97662 0.90637 1.04201 1.84748 1.49274 1.29908 1.33109 1.74002 1.20447 1.15339 1.02986 0.91598 0.93321 0.93853 0.91319 0.90431 0.93743 0.93417 0.87383 0.88519 0.82871 0.86095 0.88840 0.77264 0.91175 0.72945 0.80831 0.87603 0.87689 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.13 -2.35 4.69 30.60 0.14 -2.21 16 4 C -0.14 -1.85 4.95 30.59 0.15 -1.70 16 5 C 0.08 1.52 2.76 44.17 0.12 1.64 16 6 H 0.15 1.71 7.83 -2.39 -0.02 1.69 16 7 N -0.67 -19.59 5.41 -499.46 -2.70 -22.29 16 8 C 0.06 1.76 5.96 85.56 0.51 2.27 16 9 C 0.45 19.81 7.81 87.66 0.68 20.49 16 10 O -0.62 -34.84 15.72 -3.05 -0.05 -34.89 16 11 N -0.59 -27.14 5.09 -306.98 -1.56 -28.70 16 12 C -0.33 -19.25 10.16 84.04 0.85 -18.40 16 13 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 14 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 15 N -0.94 -56.60 13.96 21.66 0.30 -56.30 16 16 Si 0.97 37.93 27.74 68.60 1.90 39.83 16 17 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 18 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 20 C 0.53 12.52 5.67 87.66 0.50 13.02 16 21 O -0.53 -17.61 13.71 -3.02 -0.04 -17.65 16 22 N -0.62 -11.90 5.33 -309.52 -1.65 -13.55 16 23 C 0.24 5.79 8.18 134.10 1.10 6.88 16 24 C -0.26 -6.34 9.79 22.52 0.22 -6.11 16 25 C 0.00 -0.09 7.48 24.99 0.19 0.10 16 26 C -0.07 -0.65 10.45 71.23 0.74 0.09 16 27 O 0.09 1.85 11.19 71.12 0.80 2.65 16 28 N -0.41 -9.65 12.10 -56.31 -0.68 -10.33 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 1.08 6.43 -2.39 -0.02 1.06 16 35 H 0.05 1.01 7.10 -2.39 -0.02 1.00 16 36 H 0.11 0.71 7.74 -2.38 -0.02 0.69 16 37 H 0.10 1.08 7.32 -2.39 -0.02 1.07 16 38 H 0.35 11.60 6.20 -89.69 -0.56 11.04 16 39 H 0.12 2.69 8.11 -2.39 -0.02 2.67 16 40 H 0.09 1.83 7.32 -2.39 -0.02 1.81 16 41 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 42 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 43 H 0.43 5.12 8.36 -92.71 -0.77 4.35 16 44 H 0.17 4.87 6.22 -2.91 -0.02 4.85 16 45 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -87.99 389.42 2.00 -85.99 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: -0.89 Total: 43.30 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.57 Total: 11.95 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -6.29 Total: -131.17 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: 0.71 Total: -49.89 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal Total: -87.99 2.00 -85.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507214947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.798 kcal (2) G-P(sol) polarization free energy of solvation -87.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds