Wall clock time and date at job start Tue Mar 31 2020 21:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53006 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46936 * 183.30501 * 4 3 2 6 6 H 1.09004 * 109.47390 * 54.86469 * 5 4 3 7 7 N 1.46895 * 109.47166 * 294.86306 * 5 4 3 8 8 C 1.46903 * 111.00137 * 153.90708 * 7 5 4 9 9 C 1.50703 * 109.47375 * 184.81217 * 8 7 5 10 10 O 1.21293 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00097 * 179.72893 * 9 8 7 12 12 C 1.37093 * 119.99742 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00419 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99609 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99764 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46702 * 90.00384 * 16 14 12 18 18 H 1.48504 * 109.46776 * 209.99723 * 16 14 12 19 19 H 1.48499 * 109.47248 * 330.00127 * 16 14 12 20 20 C 1.50700 * 109.47142 * 174.86376 * 5 4 3 21 21 O 1.21274 * 119.99941 * 119.99315 * 20 5 4 22 22 N 1.34780 * 120.00117 * 300.00128 * 20 5 4 23 23 C 1.39497 * 120.00085 * 179.97438 * 22 20 5 24 24 C 1.42027 * 126.89431 * 359.71764 * 23 22 20 25 25 C 1.35247 * 103.96004 * 179.85222 * 24 23 22 26 26 C 1.50700 * 126.69913 * 180.14741 * 25 24 23 27 27 O 1.34088 * 106.60344 * 0.39972 * 25 24 23 28 28 N 1.20908 * 111.75151 * 359.72392 * 27 25 24 29 29 H 1.09000 * 109.47089 * 299.99683 * 1 2 3 30 30 H 1.08992 * 109.47154 * 59.99985 * 1 2 3 31 31 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46969 * 239.99539 * 2 1 3 33 33 H 1.09002 * 109.47095 * 119.99947 * 2 1 3 34 34 H 1.09000 * 109.46953 * 60.00234 * 3 2 1 35 35 H 1.08992 * 109.47192 * 299.99991 * 3 2 1 36 36 H 1.08998 * 109.47059 * 63.30046 * 4 3 2 37 37 H 1.09004 * 109.46653 * 303.30076 * 4 3 2 38 38 H 1.00900 * 111.00677 * 277.86094 * 7 5 4 39 39 H 1.08997 * 109.47180 * 64.80510 * 8 7 5 40 40 H 1.09003 * 109.46816 * 304.80896 * 8 7 5 41 41 H 0.96998 * 119.99371 * 359.97438 * 11 9 8 42 42 H 0.97005 * 120.00394 * 179.97438 * 15 14 12 43 43 H 0.96994 * 119.99819 * 0.02562 * 22 20 5 44 44 H 1.08001 * 128.02267 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47239 * 180.32269 * 26 25 24 46 46 H 1.09001 * 109.47051 * 300.32279 * 26 25 24 47 47 H 1.09005 * 109.46803 * 60.32646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8825 0.0825 6 1 3.6439 3.3728 0.9529 7 7 3.6937 3.6098 -1.1339 8 6 3.5894 5.0520 -0.8743 9 6 3.0785 5.7490 -2.1089 10 8 2.8266 5.1075 -3.1071 11 7 2.8968 7.0844 -2.1024 12 6 2.4316 7.7184 -3.2254 13 1 2.2111 7.1478 -4.1154 14 6 2.2438 9.0951 -3.2184 15 7 2.5116 9.7894 -2.1353 16 14 1.6105 9.9591 -4.7488 17 1 0.1267 10.0063 -4.7123 18 1 2.1488 11.3424 -4.7948 19 1 2.0526 9.2155 -5.9558 20 6 5.5817 2.8771 0.2090 21 8 6.2630 3.4251 -0.6315 22 7 6.1677 2.2632 1.2561 23 6 7.5577 2.2578 1.3728 24 6 8.4909 2.8445 0.4773 25 6 9.6932 2.5688 1.0319 26 6 11.0447 2.9634 0.4946 27 8 9.4481 1.8709 2.1503 28 7 8.2631 1.7069 2.3256 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9330 0.9809 -0.9189 37 1 3.9337 0.8781 0.8581 38 1 4.3391 3.4238 -1.8869 39 1 4.5717 5.4464 -0.6145 40 1 2.8990 5.2234 -0.0484 41 1 3.0946 7.5968 -1.3028 42 1 2.3809 10.7506 -2.1305 43 1 5.6228 1.8246 1.9280 44 1 8.2876 3.3870 -0.4342 45 1 11.8232 2.5917 1.1608 46 1 11.1805 2.5341 -0.4981 47 1 11.1079 4.0498 0.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507214952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:29 Heat of formation + Delta-G solvation = -21.115360 kcal Electronic energy + Delta-G solvation = -29057.525572 eV Core-core repulsion = 24857.418818 eV Total energy + Delta-G solvation = -4200.106754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.05462 -40.64645 -38.21698 -36.73381 -35.88869 -34.54866 -33.87092 -33.76225 -32.38395 -31.25856 -30.78932 -28.06494 -27.57262 -25.78877 -24.14890 -23.61052 -22.88028 -21.32246 -21.04964 -20.51552 -19.27092 -17.94555 -17.86928 -17.61243 -17.53128 -16.80240 -15.98498 -15.84408 -15.37476 -15.21934 -14.59317 -14.46212 -14.11057 -13.92567 -13.77924 -13.76962 -13.58294 -13.54743 -13.48741 -12.89096 -12.71146 -12.57746 -12.17559 -12.00630 -11.70093 -11.62904 -11.49003 -11.46765 -11.26577 -11.22748 -11.03779 -10.90848 -10.54468 -10.38062 -10.21340 -10.20021 -9.60676 -9.48930 -9.06987 -8.58402 -8.17133 -7.94392 -6.39783 -3.80431 1.17761 1.75585 2.29743 2.60213 2.93245 3.19247 3.27647 3.33734 3.92684 3.96935 4.01037 4.24330 4.31670 4.64238 4.71150 4.81404 4.87324 4.96733 4.99815 5.04486 5.10101 5.14262 5.21475 5.27451 5.28575 5.34613 5.54208 5.58680 5.67165 5.73985 5.77765 5.80186 5.86063 5.91795 5.95559 6.12178 6.17303 6.23495 6.28361 6.48963 6.74776 7.01569 7.49613 7.57090 7.67555 8.07836 8.09101 8.63187 9.19848 9.56182 10.07700 10.78057 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007841 B = 0.002931 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.329987 B = 9551.032725 C =12625.721947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.101 4.101 5 C 0.077 3.923 6 H 0.111 0.889 7 N -0.631 5.631 8 C 0.044 3.956 9 C 0.446 3.554 10 O -0.581 6.581 11 N -0.564 5.564 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.493 3.507 21 O -0.506 6.506 22 N -0.632 5.632 23 C 0.248 3.752 24 C -0.227 4.227 25 C -0.025 4.025 26 C -0.073 4.073 27 O 0.093 5.907 28 N -0.395 5.395 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.362 0.638 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.419 0.581 44 H 0.190 0.810 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -16.801 11.178 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.140 4.140 5 C -0.039 4.039 6 H 0.129 0.871 7 N -0.263 5.263 8 C -0.088 4.088 9 C 0.231 3.769 10 O -0.465 6.465 11 N -0.201 5.201 12 C -0.427 4.427 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.278 3.722 21 O -0.378 6.378 22 N -0.284 5.284 23 C -0.001 4.001 24 C -0.250 4.250 25 C -0.089 4.089 26 C -0.131 4.131 27 O 0.033 5.967 28 N -0.112 5.112 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.185 0.815 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.255 0.745 44 H 0.207 0.793 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.869 -17.377 11.015 22.404 hybrid contribution 0.436 1.356 -0.335 1.463 sum 9.305 -16.022 10.680 21.386 Atomic orbital electron populations 1.21764 0.95925 1.01200 1.02134 1.21535 0.95954 0.97183 1.01505 1.21531 0.93404 0.96362 1.03754 1.21563 0.97620 0.92422 1.02373 1.21961 0.86311 0.98449 0.97149 0.87115 1.60459 1.53589 1.07488 1.04801 1.21806 1.00394 0.87976 0.98648 1.19656 0.84966 0.83003 0.89271 1.90528 1.55914 1.65167 1.34848 1.41837 1.57890 1.05366 1.14981 1.19698 1.39819 0.90330 0.92888 0.87911 1.25256 0.97733 0.96505 0.98470 1.69613 1.48940 1.08028 1.27816 0.85863 0.78835 0.78275 0.81346 1.20408 1.20964 1.19409 1.22729 0.93163 0.76587 0.79700 1.90691 1.64825 1.42329 1.39953 1.42878 1.01909 1.55954 1.27700 1.20655 0.87076 0.98813 0.93566 1.22747 0.89383 1.08276 1.04571 1.24453 0.98881 0.97086 0.88431 1.20355 0.88375 1.02923 1.01436 1.84782 1.18532 1.56294 1.37054 1.74017 0.89589 1.24972 1.22582 0.92857 0.92372 0.93183 0.92141 0.92615 0.92178 0.89540 0.90926 0.91792 0.81523 0.93190 0.89549 0.77516 0.91909 0.74453 0.79281 0.89864 0.88997 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.11 -1.12 5.06 -26.73 -0.14 -1.25 16 4 C -0.10 -0.94 4.84 -26.73 -0.13 -1.07 16 5 C 0.08 0.86 2.40 -68.87 -0.17 0.69 16 6 H 0.11 1.05 7.71 -51.93 -0.40 0.65 16 7 N -0.63 -9.83 5.16 -109.22 -0.56 -10.39 16 8 C 0.04 0.78 5.90 -4.97 -0.03 0.75 16 9 C 0.45 10.59 7.83 -10.98 -0.09 10.50 16 10 O -0.58 -15.82 15.88 5.55 0.09 -15.73 16 11 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 12 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 13 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 16 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.49 6.10 7.02 -10.98 -0.08 6.02 16 21 O -0.51 -7.97 12.65 5.56 0.07 -7.90 16 22 N -0.63 -6.75 5.28 -11.43 -0.06 -6.81 16 23 C 0.25 3.14 8.18 -154.82 -1.27 1.87 16 24 C -0.23 -2.80 9.79 -39.20 -0.38 -3.18 16 25 C -0.02 -0.25 7.48 -35.37 -0.26 -0.51 16 26 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 27 O 0.09 1.07 11.19 17.05 0.19 1.26 16 28 N -0.39 -5.01 12.10 31.19 0.38 -4.63 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.10 7.85 -51.93 -0.41 0.70 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.44 7.42 -51.93 -0.39 0.05 16 38 H 0.36 6.35 7.58 -39.29 -0.30 6.05 16 39 H 0.05 0.87 7.79 -51.93 -0.40 0.47 16 40 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 41 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.42 3.25 8.18 -40.82 -0.33 2.91 16 44 H 0.19 2.53 6.22 -52.49 -0.33 2.20 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -33.80 396.92 -7.49 -41.30 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.03 Total: 15.70 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.19 Total: 3.54 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.42 Total: -60.34 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.35 Total: -22.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.80 -7.49 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507214952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.182 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds