Wall clock time and date at job start Tue Mar 31 2020 21:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53006 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46936 * 183.30501 * 4 3 2 6 6 H 1.09004 * 109.47390 * 54.86469 * 5 4 3 7 7 N 1.46895 * 109.47166 * 294.86306 * 5 4 3 8 8 C 1.46903 * 111.00137 * 153.90708 * 7 5 4 9 9 C 1.50703 * 109.47375 * 184.81217 * 8 7 5 10 10 O 1.21293 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00097 * 179.72893 * 9 8 7 12 12 C 1.37093 * 119.99742 * 180.02562 * 11 9 8 13 13 H 1.08001 * 120.00419 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99609 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99764 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46702 * 90.00384 * 16 14 12 18 18 H 1.48504 * 109.46776 * 209.99723 * 16 14 12 19 19 H 1.48499 * 109.47248 * 330.00127 * 16 14 12 20 20 C 1.50700 * 109.47142 * 174.86376 * 5 4 3 21 21 O 1.21274 * 119.99941 * 119.99315 * 20 5 4 22 22 N 1.34780 * 120.00117 * 300.00128 * 20 5 4 23 23 C 1.39497 * 120.00085 * 179.97438 * 22 20 5 24 24 C 1.42027 * 126.89431 * 359.71764 * 23 22 20 25 25 C 1.35247 * 103.96004 * 179.85222 * 24 23 22 26 26 C 1.50700 * 126.69913 * 180.14741 * 25 24 23 27 27 O 1.34088 * 106.60344 * 0.39972 * 25 24 23 28 28 N 1.20908 * 111.75151 * 359.72392 * 27 25 24 29 29 H 1.09000 * 109.47089 * 299.99683 * 1 2 3 30 30 H 1.08992 * 109.47154 * 59.99985 * 1 2 3 31 31 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46969 * 239.99539 * 2 1 3 33 33 H 1.09002 * 109.47095 * 119.99947 * 2 1 3 34 34 H 1.09000 * 109.46953 * 60.00234 * 3 2 1 35 35 H 1.08992 * 109.47192 * 299.99991 * 3 2 1 36 36 H 1.08998 * 109.47059 * 63.30046 * 4 3 2 37 37 H 1.09004 * 109.46653 * 303.30076 * 4 3 2 38 38 H 1.00900 * 111.00677 * 277.86094 * 7 5 4 39 39 H 1.08997 * 109.47180 * 64.80510 * 8 7 5 40 40 H 1.09003 * 109.46816 * 304.80896 * 8 7 5 41 41 H 0.96998 * 119.99371 * 359.97438 * 11 9 8 42 42 H 0.97005 * 120.00394 * 179.97438 * 15 14 12 43 43 H 0.96994 * 119.99819 * 0.02562 * 22 20 5 44 44 H 1.08001 * 128.02267 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47239 * 180.32269 * 26 25 24 46 46 H 1.09001 * 109.47051 * 300.32279 * 26 25 24 47 47 H 1.09005 * 109.46803 * 60.32646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8825 0.0825 6 1 3.6439 3.3728 0.9529 7 7 3.6937 3.6098 -1.1339 8 6 3.5894 5.0520 -0.8743 9 6 3.0785 5.7490 -2.1089 10 8 2.8266 5.1075 -3.1071 11 7 2.8968 7.0844 -2.1024 12 6 2.4316 7.7184 -3.2254 13 1 2.2111 7.1478 -4.1154 14 6 2.2438 9.0951 -3.2184 15 7 2.5116 9.7894 -2.1353 16 14 1.6105 9.9591 -4.7488 17 1 0.1267 10.0063 -4.7123 18 1 2.1488 11.3424 -4.7948 19 1 2.0526 9.2155 -5.9558 20 6 5.5817 2.8771 0.2090 21 8 6.2630 3.4251 -0.6315 22 7 6.1677 2.2632 1.2561 23 6 7.5577 2.2578 1.3728 24 6 8.4909 2.8445 0.4773 25 6 9.6932 2.5688 1.0319 26 6 11.0447 2.9634 0.4946 27 8 9.4481 1.8709 2.1503 28 7 8.2631 1.7069 2.3256 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9330 0.9809 -0.9189 37 1 3.9337 0.8781 0.8581 38 1 4.3391 3.4238 -1.8869 39 1 4.5717 5.4464 -0.6145 40 1 2.8990 5.2234 -0.0484 41 1 3.0946 7.5968 -1.3028 42 1 2.3809 10.7506 -2.1305 43 1 5.6228 1.8246 1.9280 44 1 8.2876 3.3870 -0.4342 45 1 11.8232 2.5917 1.1608 46 1 11.1805 2.5341 -0.4981 47 1 11.1079 4.0498 0.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507214952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:28 Heat of formation + Delta-G solvation = -44.999786 kcal Electronic energy + Delta-G solvation = -29058.561278 eV Core-core repulsion = 24857.418818 eV Total energy + Delta-G solvation = -4201.142461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.95113 -41.66886 -40.06423 -37.76608 -36.85173 -36.03924 -35.36323 -34.59725 -33.39332 -33.21372 -31.82324 -28.80081 -28.67851 -27.28583 -25.62636 -24.71500 -23.72322 -22.20691 -21.81252 -21.49863 -21.08391 -19.93245 -18.78190 -18.66364 -18.43709 -17.82563 -17.55145 -16.90464 -16.64755 -16.36551 -16.21959 -15.87777 -15.56716 -15.15442 -14.93942 -14.75886 -14.39817 -14.38390 -14.04358 -14.03425 -13.88881 -13.49903 -13.40834 -13.33409 -13.12403 -12.95702 -12.84741 -12.53999 -12.41724 -12.28886 -12.12919 -12.07133 -11.98790 -11.69347 -11.51029 -11.31299 -11.18592 -10.44237 -10.38081 -10.01844 -9.98742 -9.57138 -8.46821 -5.95539 0.30596 0.83142 1.37644 1.38960 1.41344 1.54246 1.65696 2.04875 2.15120 2.28369 2.78474 3.14646 3.20139 3.36608 3.52020 3.79914 3.92946 3.98331 4.03716 4.20324 4.27035 4.27666 4.31743 4.44143 4.50443 4.53034 4.59788 4.69808 4.70975 4.83549 4.86338 4.92460 5.08955 5.12381 5.12981 5.21432 5.26893 5.40064 5.40510 5.52254 5.66579 5.70453 5.95483 6.04845 6.17119 6.59372 6.75263 7.12266 7.20889 7.55277 8.10803 8.70717 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007841 B = 0.002931 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.329987 B = 9551.032725 C =12625.721947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.094 4.094 5 C 0.082 3.918 6 H 0.138 0.862 7 N -0.640 5.640 8 C 0.061 3.939 9 C 0.442 3.558 10 O -0.620 6.620 11 N -0.573 5.573 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.993 3.007 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.273 1.273 20 C 0.497 3.503 21 O -0.543 6.543 22 N -0.617 5.617 23 C 0.235 3.765 24 C -0.260 4.260 25 C -0.004 4.004 26 C -0.074 4.074 27 O 0.090 5.910 28 N -0.407 5.407 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.349 0.651 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.433 0.567 44 H 0.176 0.824 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -17.323 12.801 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.032 4.032 6 H 0.156 0.844 7 N -0.271 5.271 8 C -0.071 4.071 9 C 0.229 3.771 10 O -0.506 6.506 11 N -0.211 5.211 12 C -0.463 4.463 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.816 3.184 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.198 1.198 20 C 0.284 3.716 21 O -0.418 6.418 22 N -0.271 5.271 23 C -0.014 4.014 24 C -0.283 4.283 25 C -0.067 4.067 26 C -0.131 4.131 27 O 0.032 5.968 28 N -0.125 5.125 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.273 0.727 44 H 0.193 0.807 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.440 -17.922 12.706 23.911 hybrid contribution 0.327 1.459 -0.815 1.703 sum 9.767 -16.463 11.891 22.535 Atomic orbital electron populations 1.21778 0.96118 1.01703 1.01580 1.21520 0.95786 0.96421 1.02196 1.21468 0.93650 0.96973 1.02624 1.21565 0.97179 0.91194 1.03329 1.22104 0.85694 0.99327 0.96106 0.84425 1.60467 1.53848 1.06346 1.06401 1.21641 1.00821 0.88743 0.95934 1.20721 0.83277 0.82428 0.90652 1.90495 1.57233 1.65886 1.37017 1.41908 1.58418 1.06176 1.14563 1.19661 1.42104 0.91181 0.93307 0.90340 1.26041 0.97267 0.96518 1.01443 1.69673 1.48829 1.08543 1.29141 0.84934 0.78569 0.77378 0.77493 1.19490 1.19535 1.19822 1.22816 0.93361 0.76031 0.79436 1.90693 1.65576 1.44091 1.41407 1.42691 1.01514 1.55350 1.27502 1.20885 0.87777 0.98998 0.93752 1.22736 0.90615 1.10003 1.04943 1.25094 0.99938 0.94720 0.86979 1.20615 0.86436 1.03731 1.02342 1.84755 1.18159 1.56409 1.37527 1.74005 0.90008 1.25610 1.22879 0.92343 0.94007 0.92180 0.92723 0.90589 0.90982 0.92973 0.92149 0.88360 0.83063 0.92695 0.86609 0.77073 0.91303 0.72698 0.80705 0.87706 0.87634 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.12 -1.92 5.93 30.60 0.18 -1.74 16 3 C -0.11 -2.01 5.06 30.60 0.15 -1.85 16 4 C -0.09 -1.58 4.84 30.59 0.15 -1.43 16 5 C 0.08 1.71 2.40 44.17 0.11 1.82 16 6 H 0.14 2.18 7.71 -2.39 -0.02 2.16 16 7 N -0.64 -19.87 5.16 -499.47 -2.58 -22.45 16 8 C 0.06 2.13 5.90 85.56 0.50 2.63 16 9 C 0.44 21.50 7.83 87.66 0.69 22.19 16 10 O -0.62 -35.06 15.88 -3.07 -0.05 -35.11 16 11 N -0.57 -30.04 5.29 -306.98 -1.62 -31.67 16 12 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 13 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 15 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 16 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.50 11.87 7.02 87.66 0.62 12.48 16 21 O -0.54 -17.32 12.65 -3.01 -0.04 -17.36 16 22 N -0.62 -12.29 5.28 -309.52 -1.64 -13.92 16 23 C 0.24 5.76 8.18 134.11 1.10 6.85 16 24 C -0.26 -6.37 9.79 22.52 0.22 -6.15 16 25 C 0.00 -0.07 7.48 25.00 0.19 0.12 16 26 C -0.07 -0.68 10.45 71.24 0.74 0.06 16 27 O 0.09 1.95 11.19 71.20 0.80 2.75 16 28 N -0.41 -9.87 12.10 -56.32 -0.68 -10.55 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.01 7.42 -2.38 -0.02 0.99 16 38 H 0.35 12.58 7.58 -89.69 -0.68 11.90 16 39 H 0.06 1.89 7.79 -2.39 -0.02 1.87 16 40 H 0.12 3.37 7.93 -2.39 -0.02 3.35 16 41 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 42 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 43 H 0.43 5.65 8.18 -92.71 -0.76 4.90 16 44 H 0.18 4.85 6.22 -2.91 -0.02 4.83 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -75.75 396.92 1.99 -73.76 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -1.15 Total: 44.56 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.64 Total: 14.49 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -6.24 Total: -128.61 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: 0.71 Total: -49.72 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -75.75 1.99 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507214952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds