Wall clock time and date at job start Tue Mar 31 2020 21:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99990 * 2 1 4 4 C 1.53002 * 109.46989 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.34981 * 125.97333 * 125.02857 * 5 4 3 7 7 C 1.35218 * 107.88010 * 179.97438 * 6 5 4 8 8 C 1.40463 * 107.86607 * 359.97438 * 7 6 5 9 9 N 1.39923 * 125.98175 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00292 * 0.02562 * 9 8 7 11 11 O 1.21385 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.49336 * 120.00388 * 180.02562 * 10 9 8 13 13 O 1.21365 * 120.00238 * 355.40653 * 12 10 9 14 14 N 1.34774 * 120.00260 * 175.40784 * 12 10 9 15 15 C 1.46499 * 119.99886 * 1.88780 * 14 12 10 16 16 C 1.50698 * 109.47308 * 82.45573 * 15 14 12 17 17 H 1.08004 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00168 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47284 * 59.99741 * 20 18 16 22 22 H 1.48499 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46908 * 299.99943 * 20 18 16 24 24 C 1.46508 * 120.00327 * 181.88748 * 14 12 10 25 25 C 1.52993 * 109.47012 * 301.08822 * 24 14 12 26 26 C 1.53003 * 109.46721 * 61.08600 * 24 14 12 27 27 N 1.31277 * 108.03655 * 0.02562 * 8 7 6 28 28 H 1.08998 * 109.47098 * 59.99747 * 1 2 3 29 29 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.00093 * 1 2 3 31 31 H 1.08993 * 109.47290 * 60.00482 * 3 2 1 32 32 H 1.09003 * 109.47440 * 299.99750 * 3 2 1 33 33 H 1.09002 * 109.47334 * 60.00361 * 4 3 2 34 34 H 1.09000 * 109.47472 * 300.00143 * 4 3 2 35 35 H 1.08001 * 126.06535 * 0.02562 * 6 5 4 36 36 H 1.07999 * 126.07213 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99922 * 180.02562 * 9 8 7 38 38 H 1.09008 * 109.47243 * 202.45335 * 15 14 12 39 39 H 1.09005 * 109.47313 * 322.45122 * 15 14 12 40 40 H 0.97003 * 119.99892 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47137 * 181.08319 * 24 14 12 42 42 H 1.09003 * 109.47627 * 68.00746 * 25 24 14 43 43 H 1.09007 * 109.47004 * 188.01110 * 25 24 14 44 44 H 1.09001 * 109.46912 * 308.00806 * 25 24 14 45 45 H 1.08998 * 109.47029 * 61.29767 * 26 24 14 46 46 H 1.09002 * 109.47122 * 181.29710 * 26 24 14 47 47 H 1.09001 * 109.46807 * 301.29589 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0269 2.9917 0.8945 7 6 5.3298 4.2639 0.5509 8 6 4.5913 4.5872 -0.5993 9 7 4.6171 5.8119 -1.2756 10 6 5.4038 6.8113 -0.8301 11 8 6.0904 6.6489 0.1577 12 6 5.4309 8.1186 -1.5515 13 8 4.8096 8.2543 -2.5852 14 7 6.1453 9.1478 -1.0547 15 6 6.9284 8.9718 0.1708 16 6 8.2514 8.3334 -0.1657 17 1 8.4852 8.0833 -1.1900 18 6 9.1628 8.0676 0.8341 19 7 8.8778 8.3716 2.0815 20 14 10.8029 7.2768 0.4169 21 1 11.5482 8.1502 -0.5250 22 1 11.5967 7.0984 1.6591 23 1 10.5680 5.9539 -0.2154 24 6 6.1387 10.4426 -1.7402 25 6 6.6529 10.2652 -3.1701 26 6 4.7117 10.9933 -1.7760 27 7 3.8719 3.5395 -0.9282 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8909 34 1 3.8574 0.6435 0.8891 35 1 5.4308 2.4469 1.7350 36 1 6.0175 4.9159 1.0690 37 1 4.0687 5.9415 -2.0651 38 1 7.1013 9.9432 0.6343 39 1 6.3815 8.3314 0.8628 40 1 9.5189 8.1843 2.7850 41 1 6.7840 11.1399 -1.2058 42 1 5.9330 9.6833 -3.7457 43 1 6.7830 11.2433 -3.6334 44 1 7.6093 9.7426 -3.1501 45 1 4.3537 11.1414 -0.7572 46 1 4.7030 11.9457 -2.3062 47 1 4.0618 10.2853 -2.2902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526112189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:57 Heat of formation + Delta-G solvation = -5.880697 kcal Electronic energy + Delta-G solvation = -29850.681248 eV Core-core repulsion = 25651.235119 eV Total energy + Delta-G solvation = -4199.446130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25177 -40.11568 -38.37866 -38.05553 -35.88417 -34.73305 -33.01949 -32.86751 -31.37815 -29.98125 -28.75748 -27.04778 -26.72052 -26.47802 -24.95811 -23.25797 -22.60115 -21.91022 -21.05217 -19.94450 -18.78420 -17.46609 -16.96044 -16.69135 -16.48538 -16.23485 -16.04729 -15.56276 -15.37434 -15.07544 -14.94990 -14.49567 -14.27050 -13.92032 -13.84757 -13.41773 -13.15426 -13.04499 -12.81318 -12.71453 -12.27602 -12.21738 -11.92461 -11.82128 -11.68563 -11.53269 -11.48548 -10.99972 -10.93382 -10.81760 -10.76973 -10.56516 -10.52414 -10.20919 -10.06940 -9.73938 -9.63073 -8.68755 -8.65099 -8.26255 -8.05720 -7.80023 -6.01514 -4.03758 1.73699 2.10080 2.22774 2.91417 3.12866 3.33843 3.37579 3.41560 3.55662 3.96868 4.10633 4.44112 4.47001 4.62596 4.83962 4.93496 4.98089 4.98710 5.03965 5.20819 5.28787 5.34781 5.39900 5.41970 5.58603 5.63236 5.72370 5.84779 5.99105 6.00297 6.08874 6.25720 6.35825 6.44042 6.60867 6.66699 6.71209 6.81382 6.98759 7.17364 7.26323 7.41764 7.49072 7.87692 7.97620 8.13265 8.20932 8.37199 8.68655 8.97204 9.59060 11.07148 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003093 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.447034 B = 9050.120284 C =10886.364039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.050 3.950 4 C 0.147 3.853 5 N -0.375 5.375 6 C 0.062 3.938 7 C -0.258 4.258 8 C 0.313 3.687 9 N -0.624 5.624 10 C 0.497 3.503 11 O -0.426 6.426 12 C 0.515 3.485 13 O -0.554 6.554 14 N -0.553 5.553 15 C 0.223 3.777 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.070 3.930 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.143 3.857 25 C -0.165 4.165 26 C -0.167 4.167 27 N -0.330 5.330 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.180 0.820 37 H 0.420 0.580 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.262 0.738 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -9.487 -2.840 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.025 3.975 5 N -0.162 5.162 6 C -0.082 4.082 7 C -0.289 4.289 8 C 0.056 3.944 9 N -0.277 5.277 10 C 0.277 3.723 11 O -0.292 6.292 12 C 0.297 3.703 13 O -0.436 6.436 14 N -0.283 5.283 15 C 0.104 3.896 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.132 4.132 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.040 3.960 25 C -0.223 4.223 26 C -0.225 4.225 27 N -0.161 5.161 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.194 0.806 36 H 0.197 0.803 37 H 0.257 0.743 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.457 -10.187 -3.196 17.178 hybrid contribution 1.195 0.069 0.088 1.200 sum -12.262 -10.118 -3.108 16.199 Atomic orbital electron populations 1.22757 0.80202 1.02902 1.00357 1.87767 1.20390 1.27306 1.95612 1.22719 0.93037 0.84971 1.02035 1.21266 0.92144 0.79211 1.04922 1.47884 1.35391 1.11012 1.21866 1.22605 0.94111 0.95516 0.95986 1.22095 1.09116 0.97023 1.00619 1.19151 0.95622 0.86516 0.93069 1.42415 1.45347 1.08964 1.30934 1.20495 0.80477 0.85355 0.85938 1.90879 1.35978 1.79535 1.22788 1.19462 0.81112 0.84667 0.85068 1.90613 1.45889 1.83123 1.23928 1.48390 1.43558 1.08865 1.27503 1.20092 0.90993 0.98261 0.80204 1.21169 0.99873 1.40643 0.93702 0.92854 1.24782 0.98229 0.95406 0.94785 1.69907 1.35846 1.47617 0.99531 0.86667 0.83716 0.80082 0.77572 1.20442 1.21269 1.20253 1.21063 0.96837 0.84325 0.93752 1.22175 1.02222 1.01661 0.96243 1.22199 0.97322 1.01100 1.01881 1.77302 1.26888 0.96461 1.15434 0.93769 0.89339 0.93881 0.92654 0.91566 0.89152 0.87773 0.80580 0.80284 0.74346 0.95015 0.91070 0.92823 0.89123 0.90752 0.92637 0.92177 0.92869 0.92162 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.72 10.70 -35.23 -0.38 -4.10 16 3 C 0.05 0.48 6.12 37.16 0.23 0.71 16 4 C 0.15 1.40 6.88 -4.04 -0.03 1.37 16 5 N -0.38 -4.96 3.68 -61.38 -0.23 -5.19 16 6 C 0.06 0.83 11.43 -17.24 -0.20 0.64 16 7 C -0.26 -4.46 9.60 -39.82 -0.38 -4.85 16 8 C 0.31 5.49 8.10 -154.55 -1.25 4.24 16 9 N -0.62 -10.99 5.43 -11.58 -0.06 -11.06 16 10 C 0.50 10.08 7.71 -11.64 -0.09 9.99 16 11 O -0.43 -9.80 9.40 5.47 0.05 -9.75 16 12 C 0.51 10.46 7.08 -11.64 -0.08 10.37 16 13 O -0.55 -10.95 12.79 5.48 0.07 -10.88 16 14 N -0.55 -11.44 2.43 -168.01 -0.41 -11.85 16 15 C 0.22 5.41 4.77 -5.20 -0.02 5.38 16 16 C -0.52 -13.75 8.12 -34.44 -0.28 -14.03 16 17 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 18 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 19 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.14 2.52 3.28 -67.93 -0.22 2.29 16 25 C -0.17 -2.73 8.96 37.15 0.33 -2.40 16 26 C -0.17 -2.52 9.15 37.16 0.34 -2.18 16 27 N -0.33 -5.29 12.44 31.41 0.39 -4.90 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.18 3.54 5.91 -52.49 -0.31 3.23 16 37 H 0.42 6.62 8.30 -40.82 -0.34 6.28 16 38 H 0.03 0.80 7.78 -51.92 -0.40 0.39 16 39 H 0.07 1.86 5.55 -51.93 -0.29 1.57 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 1.56 7.71 -51.93 -0.40 1.16 16 42 H 0.07 1.29 6.30 -51.93 -0.33 0.97 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.21 6.28 -51.93 -0.33 0.88 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -31.46 390.17 -6.62 -38.08 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.01 Total: 7.15 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -0.64 Total: 14.71 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.43 Total: -57.51 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.26 Total: -24.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.46 -6.62 -38.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.202 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds