Wall clock time and date at job start Tue Mar 31 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99990 * 2 1 4 4 C 1.53002 * 109.46989 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.34981 * 125.97333 * 125.02857 * 5 4 3 7 7 C 1.35218 * 107.88010 * 179.97438 * 6 5 4 8 8 C 1.40463 * 107.86607 * 359.97438 * 7 6 5 9 9 N 1.39923 * 125.98175 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00292 * 0.02562 * 9 8 7 11 11 O 1.21385 * 119.99808 * 0.02562 * 10 9 8 12 12 C 1.49336 * 120.00388 * 180.02562 * 10 9 8 13 13 O 1.21365 * 120.00238 * 355.40653 * 12 10 9 14 14 N 1.34774 * 120.00260 * 175.40784 * 12 10 9 15 15 C 1.46499 * 119.99886 * 1.88780 * 14 12 10 16 16 C 1.50698 * 109.47308 * 82.45573 * 15 14 12 17 17 H 1.08004 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00168 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00130 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47284 * 59.99741 * 20 18 16 22 22 H 1.48499 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46908 * 299.99943 * 20 18 16 24 24 C 1.46508 * 120.00327 * 181.88748 * 14 12 10 25 25 C 1.52993 * 109.47012 * 301.08822 * 24 14 12 26 26 C 1.53003 * 109.46721 * 61.08600 * 24 14 12 27 27 N 1.31277 * 108.03655 * 0.02562 * 8 7 6 28 28 H 1.08998 * 109.47098 * 59.99747 * 1 2 3 29 29 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.00093 * 1 2 3 31 31 H 1.08993 * 109.47290 * 60.00482 * 3 2 1 32 32 H 1.09003 * 109.47440 * 299.99750 * 3 2 1 33 33 H 1.09002 * 109.47334 * 60.00361 * 4 3 2 34 34 H 1.09000 * 109.47472 * 300.00143 * 4 3 2 35 35 H 1.08001 * 126.06535 * 0.02562 * 6 5 4 36 36 H 1.07999 * 126.07213 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99922 * 180.02562 * 9 8 7 38 38 H 1.09008 * 109.47243 * 202.45335 * 15 14 12 39 39 H 1.09005 * 109.47313 * 322.45122 * 15 14 12 40 40 H 0.97003 * 119.99892 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47137 * 181.08319 * 24 14 12 42 42 H 1.09003 * 109.47627 * 68.00746 * 25 24 14 43 43 H 1.09007 * 109.47004 * 188.01110 * 25 24 14 44 44 H 1.09001 * 109.46912 * 308.00806 * 25 24 14 45 45 H 1.08998 * 109.47029 * 61.29767 * 26 24 14 46 46 H 1.09002 * 109.47122 * 181.29710 * 26 24 14 47 47 H 1.09001 * 109.46807 * 301.29589 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0269 2.9917 0.8945 7 6 5.3298 4.2639 0.5509 8 6 4.5913 4.5872 -0.5993 9 7 4.6171 5.8119 -1.2756 10 6 5.4038 6.8113 -0.8301 11 8 6.0904 6.6489 0.1577 12 6 5.4309 8.1186 -1.5515 13 8 4.8096 8.2543 -2.5852 14 7 6.1453 9.1478 -1.0547 15 6 6.9284 8.9718 0.1708 16 6 8.2514 8.3334 -0.1657 17 1 8.4852 8.0833 -1.1900 18 6 9.1628 8.0676 0.8341 19 7 8.8778 8.3716 2.0815 20 14 10.8029 7.2768 0.4169 21 1 11.5482 8.1502 -0.5250 22 1 11.5967 7.0984 1.6591 23 1 10.5680 5.9539 -0.2154 24 6 6.1387 10.4426 -1.7402 25 6 6.6529 10.2652 -3.1701 26 6 4.7117 10.9933 -1.7760 27 7 3.8719 3.5395 -0.9282 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8909 34 1 3.8574 0.6435 0.8891 35 1 5.4308 2.4469 1.7350 36 1 6.0175 4.9159 1.0690 37 1 4.0687 5.9415 -2.0651 38 1 7.1013 9.9432 0.6343 39 1 6.3815 8.3314 0.8628 40 1 9.5189 8.1843 2.7850 41 1 6.7840 11.1399 -1.2058 42 1 5.9330 9.6833 -3.7457 43 1 6.7830 11.2433 -3.6334 44 1 7.6093 9.7426 -3.1501 45 1 4.3537 11.1414 -0.7572 46 1 4.7030 11.9457 -2.3062 47 1 4.0618 10.2853 -2.2902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526112189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:56 Heat of formation + Delta-G solvation = -26.528286 kcal Electronic energy + Delta-G solvation = -29851.576595 eV Core-core repulsion = 25651.235119 eV Total energy + Delta-G solvation = -4200.341476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53069 -41.63278 -39.73732 -38.94623 -37.49804 -36.07810 -34.90705 -33.98038 -33.05953 -31.18637 -29.74220 -28.95646 -28.01267 -27.26461 -26.36312 -24.75408 -24.02819 -23.28039 -22.22840 -21.27686 -20.24925 -18.75954 -18.50159 -18.32811 -17.70279 -17.31227 -17.05597 -16.84298 -16.72119 -16.58904 -16.27290 -16.02059 -15.61018 -15.38850 -14.99931 -14.61952 -14.58092 -14.30156 -14.18103 -13.98775 -13.94063 -13.53098 -13.24496 -13.12260 -12.81090 -12.74199 -12.71459 -12.60478 -12.44889 -12.34672 -12.18890 -12.09350 -11.85236 -11.74969 -11.61672 -11.33874 -10.76100 -10.56550 -10.07275 -9.92227 -9.56474 -9.28653 -8.10181 -6.18309 0.27887 0.90160 0.93949 1.40914 1.43054 1.49495 1.65954 1.76283 2.37272 2.44354 2.56504 2.87929 3.23250 3.36522 3.64577 3.89606 3.94635 4.05525 4.15690 4.24811 4.25497 4.36579 4.46862 4.48935 4.56450 4.67260 4.67813 4.72494 4.80852 4.82125 4.82594 4.93167 5.02022 5.03660 5.08966 5.27209 5.37723 5.45566 5.66142 5.72127 5.82544 5.95141 5.99166 6.11279 6.15943 6.34884 6.65762 6.84700 6.86339 7.10989 7.47474 8.97638 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003093 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.447034 B = 9050.120284 C =10886.364039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.056 3.944 4 C 0.140 3.860 5 N -0.364 5.364 6 C 0.091 3.909 7 C -0.299 4.299 8 C 0.289 3.711 9 N -0.613 5.613 10 C 0.495 3.505 11 O -0.460 6.460 12 C 0.514 3.486 13 O -0.548 6.548 14 N -0.558 5.558 15 C 0.241 3.759 16 C -0.518 4.518 17 H 0.042 0.958 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.947 3.053 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.131 3.869 25 C -0.156 4.156 26 C -0.156 4.156 27 N -0.339 5.339 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.223 0.777 36 H 0.150 0.850 37 H 0.427 0.573 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -10.778 -3.285 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.021 4.021 4 C 0.020 3.980 5 N -0.149 5.149 6 C -0.055 4.055 7 C -0.330 4.330 8 C 0.034 3.966 9 N -0.265 5.265 10 C 0.276 3.724 11 O -0.328 6.328 12 C 0.296 3.704 13 O -0.429 6.429 14 N -0.288 5.288 15 C 0.121 3.879 16 C -0.557 4.557 17 H 0.060 0.940 18 C -0.174 4.174 19 N -0.558 5.558 20 Si 0.773 3.227 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.207 1.207 24 C 0.029 3.971 25 C -0.214 4.214 26 C -0.214 4.214 27 N -0.170 5.170 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.157 0.843 35 H 0.239 0.761 36 H 0.167 0.833 37 H 0.265 0.735 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.111 0.889 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.002 -11.488 -3.699 18.485 hybrid contribution 1.215 0.339 0.201 1.277 sum -12.787 -11.149 -3.498 17.322 Atomic orbital electron populations 1.22962 0.78866 1.04266 1.00809 1.87744 1.21868 1.26912 1.95655 1.22567 0.93074 0.85143 1.01339 1.21646 0.92082 0.77281 1.07034 1.48224 1.34573 1.11453 1.20641 1.23102 0.92298 0.94121 0.95956 1.21942 1.10558 0.98811 1.01658 1.19289 0.96819 0.86735 0.93743 1.42211 1.44539 1.08867 1.30860 1.20563 0.80476 0.85803 0.85589 1.90883 1.37609 1.80140 1.24132 1.19505 0.81098 0.84706 0.85121 1.90606 1.45626 1.83112 1.23543 1.48349 1.43299 1.10287 1.26867 1.19619 0.90279 0.96747 0.81286 1.21321 1.00928 1.40346 0.93066 0.93988 1.25462 1.01266 0.95976 0.94738 1.70002 1.36884 1.48717 1.00229 0.85789 0.80308 0.78959 0.77616 1.19543 1.20499 1.20713 1.21396 0.98744 0.82961 0.93997 1.22097 1.00546 1.03158 0.95564 1.22109 0.95005 1.02079 1.02184 1.77248 1.26693 0.96630 1.16457 0.93585 0.87587 0.93195 0.92641 0.93069 0.88415 0.84308 0.76106 0.83290 0.73514 0.96151 0.93106 0.92770 0.88951 0.91659 0.89237 0.94359 0.92944 0.88948 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.77 10.70 -148.98 -1.59 -8.37 16 3 C 0.06 0.98 6.12 71.98 0.44 1.42 16 4 C 0.14 2.27 6.88 86.38 0.59 2.86 16 5 N -0.36 -8.91 3.68 -348.11 -1.28 -10.19 16 6 C 0.09 2.28 11.43 83.51 0.95 3.24 16 7 C -0.30 -10.54 9.60 22.12 0.21 -10.32 16 8 C 0.29 10.34 8.10 133.40 1.08 11.42 16 9 N -0.61 -22.29 5.43 -308.91 -1.68 -23.97 16 10 C 0.50 20.94 7.71 87.23 0.67 21.61 16 11 O -0.46 -22.30 9.40 -3.35 -0.03 -22.33 16 12 C 0.51 21.35 7.08 87.23 0.62 21.97 16 13 O -0.55 -21.73 12.79 -3.29 -0.04 -21.77 16 14 N -0.56 -23.59 2.43 -803.82 -1.95 -25.54 16 15 C 0.24 12.11 4.77 85.63 0.41 12.51 16 16 C -0.52 -28.38 8.12 25.60 0.21 -28.17 16 17 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 18 C 0.03 1.40 5.46 84.65 0.46 1.86 16 19 N -0.92 -53.18 13.29 21.45 0.28 -52.90 16 20 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 24 C 0.13 4.54 3.28 44.99 0.15 4.68 16 25 C -0.16 -5.01 8.96 71.98 0.64 -4.36 16 26 C -0.16 -4.49 9.15 71.98 0.66 -3.84 16 27 N -0.34 -10.70 12.44 -54.54 -0.68 -11.37 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.14 1.36 8.07 -2.39 -0.02 1.35 16 35 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.15 6.25 5.91 -2.91 -0.02 6.23 16 37 H 0.43 13.77 8.30 -92.71 -0.77 13.00 16 38 H 0.02 1.06 7.78 -2.38 -0.02 1.04 16 39 H 0.05 2.81 5.55 -2.38 -0.01 2.79 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.09 3.15 7.71 -2.39 -0.02 3.13 16 42 H 0.06 2.21 6.30 -2.39 -0.02 2.19 16 43 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 1.93 6.28 -2.39 -0.01 1.92 16 Total: -1.00 -69.86 390.17 3.63 -66.23 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.22 Total: 27.30 kcal Atomic # 6 Polarization: 28.10 SS G_CDS: 8.35 Total: 36.45 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -5.31 Total: -123.97 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.67 Total: -52.47 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.86 3.63 -66.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.703 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds