Wall clock time and date at job start Tue Mar 31 2020 21:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47303 * 2 1 4 4 C 1.34822 * 117.00203 * 180.02562 * 3 2 1 5 5 O 1.21593 * 120.00087 * 359.97438 * 4 3 2 6 6 C 1.46750 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.41473 * 126.51444 * 0.02562 * 6 4 3 8 8 N 1.30307 * 108.16804 * 180.02562 * 7 6 4 9 9 N 1.39894 * 109.21242 * 359.97438 * 8 7 6 10 10 C 1.46499 * 125.74350 * 179.97438 * 9 8 7 11 11 C 1.34768 * 108.51136 * 359.73409 * 9 8 7 12 12 N 1.38482 * 126.43080 * 180.29933 * 11 9 8 13 13 C 1.34771 * 120.00289 * 59.43415 * 12 11 9 14 14 O 1.21271 * 120.00054 * 2.64322 * 13 12 11 15 15 C 1.50703 * 120.00308 * 182.65161 * 13 12 11 16 16 N 1.46898 * 109.47504 * 179.97438 * 15 13 12 17 17 C 1.46897 * 110.99882 * 174.48173 * 16 15 13 18 18 H 1.08994 * 109.47300 * 34.54345 * 17 16 15 19 19 C 1.50703 * 109.47054 * 154.54926 * 17 16 15 20 20 H 1.08008 * 119.99823 * 359.97438 * 19 17 16 21 21 C 1.37877 * 120.00374 * 179.97438 * 19 17 16 22 22 N 1.31514 * 119.99541 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00343 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46919 * 59.99647 * 23 21 19 25 25 H 1.48498 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47104 * 300.00484 * 23 21 19 27 27 C 1.52998 * 109.47089 * 274.54331 * 17 16 15 28 28 C 1.53003 * 109.47539 * 302.95002 * 27 17 16 29 29 H 1.08999 * 109.47151 * 300.00298 * 1 2 3 30 30 H 1.08997 * 109.46890 * 60.00867 * 1 2 3 31 31 H 1.09005 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47558 * 239.99401 * 2 1 3 33 33 H 1.09004 * 109.47229 * 119.99308 * 2 1 3 34 34 H 1.07998 * 125.91163 * 359.97102 * 7 6 4 35 35 H 1.09001 * 109.46879 * 84.88342 * 10 9 8 36 36 H 1.08992 * 109.47266 * 204.88201 * 10 9 8 37 37 H 1.09006 * 109.47255 * 324.88561 * 10 9 8 38 38 H 0.97006 * 119.99679 * 239.42243 * 12 11 9 39 39 H 1.09006 * 109.46934 * 299.99695 * 15 13 12 40 40 H 1.08995 * 109.46849 * 59.99098 * 15 13 12 41 41 H 1.00895 * 110.99696 * 298.43820 * 16 15 13 42 42 H 0.96999 * 120.00154 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.47331 * 62.94929 * 27 17 16 44 44 H 1.09002 * 109.47145 * 182.95006 * 27 17 16 45 45 H 1.09000 * 109.47060 * 184.09724 * 28 27 17 46 46 H 1.08996 * 109.46903 * 304.09922 * 28 27 17 47 47 H 1.09007 * 109.46781 * 64.09963 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5456 -0.0005 5 8 4.0913 0.5813 -0.0005 6 6 3.9115 2.9017 -0.0011 7 6 3.1826 4.1142 -0.0007 8 7 4.0343 5.1003 -0.0021 9 7 5.3350 4.5852 -0.0028 10 6 6.5684 5.3756 -0.0049 11 6 5.2623 3.2395 0.0041 12 7 6.3304 2.3582 0.0116 13 6 7.2253 2.3925 1.0187 14 8 7.0690 3.1621 1.9428 15 6 8.4202 1.4744 0.9967 16 7 9.2366 1.7042 2.1961 17 6 10.3397 0.7374 2.2752 18 1 10.6933 0.5064 1.2704 19 6 11.4678 1.3273 3.0817 20 1 11.3748 2.3213 3.4938 21 6 12.6187 0.5981 3.2935 22 7 12.7317 -0.6124 2.7920 23 14 14.0173 1.3296 4.2925 24 1 13.5356 1.6452 5.6612 25 1 15.1319 0.3516 4.3737 26 1 14.4960 2.5733 3.6372 27 6 9.8468 -0.5445 2.9495 28 6 9.2827 -0.2094 4.3318 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.1065 4.2063 -0.0003 35 1 6.8259 5.6499 1.0182 36 1 7.3769 4.7863 -0.4374 37 1 6.4202 6.2789 -0.5968 38 1 6.4345 1.7162 -0.7081 39 1 8.0820 0.4383 0.9800 40 1 9.0169 1.6761 0.1072 41 1 9.5834 2.6514 2.2213 42 1 13.5412 -1.1256 2.9413 43 1 9.0665 -0.9992 2.3393 44 1 10.6778 -1.2419 3.0556 45 1 8.9986 -1.1301 4.8412 46 1 10.0408 0.3108 4.9172 47 1 8.4067 0.4300 4.2214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563727680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:40 Heat of formation + Delta-G solvation = -40.237478 kcal Electronic energy + Delta-G solvation = -29644.301625 eV Core-core repulsion = 25443.365674 eV Total energy + Delta-G solvation = -4200.935952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93170 -40.05761 -39.48252 -36.59048 -36.19272 -34.96503 -33.57102 -32.66446 -31.91517 -30.81983 -29.83189 -27.71302 -27.16421 -25.11831 -24.10268 -23.16432 -22.62718 -21.83661 -20.81917 -20.13654 -19.06919 -18.36861 -17.61005 -17.27760 -16.64301 -16.40533 -16.18899 -15.73071 -15.40919 -14.95206 -14.72293 -14.40489 -14.20562 -13.94636 -13.68632 -13.61427 -13.29806 -13.04284 -12.97012 -12.90915 -12.84870 -12.19581 -12.11595 -11.91988 -11.87063 -11.55251 -11.46522 -10.95213 -10.84878 -10.67486 -10.51341 -10.44390 -10.38936 -10.15077 -10.06002 -9.69226 -9.46727 -9.41457 -8.86534 -8.81686 -8.51380 -7.37928 -6.07250 -4.13257 1.02036 1.78279 1.87013 2.51052 2.61979 2.91983 3.10307 3.28487 3.33441 3.36697 4.18076 4.36386 4.66936 4.70385 4.74504 4.76407 4.83052 4.99101 5.03909 5.07323 5.18797 5.22789 5.27368 5.32685 5.51991 5.54741 5.65179 5.70522 5.72017 5.77680 6.13012 6.35020 6.50113 6.62245 6.66377 6.83237 7.00111 7.18029 7.23378 7.31269 7.41951 7.69910 7.71659 7.77424 7.78396 8.05789 8.19218 8.27982 8.54559 8.94258 9.51863 10.98519 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002611 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.124148 B =10720.078035 C =12104.147168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.548 3.452 5 O -0.516 6.516 6 C -0.297 4.297 7 C 0.112 3.888 8 N -0.286 5.286 9 N -0.348 5.348 10 C 0.097 3.903 11 C 0.401 3.599 12 N -0.662 5.662 13 C 0.519 3.481 14 O -0.498 6.498 15 C 0.049 3.951 16 N -0.668 5.668 17 C 0.219 3.781 18 H 0.003 0.997 19 C -0.514 4.514 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.105 4.105 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.200 0.800 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.426 0.574 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.339 0.661 42 H 0.262 0.738 43 H 0.009 0.991 44 H 0.090 0.910 45 H 0.014 0.986 46 H 0.055 0.945 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 5.388 -10.832 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.393 3.607 5 O -0.405 6.405 6 C -0.313 4.313 7 C -0.075 4.075 8 N -0.107 5.107 9 N -0.130 5.130 10 C -0.043 4.043 11 C 0.173 3.827 12 N -0.318 5.318 13 C 0.307 3.693 14 O -0.368 6.368 15 C -0.084 4.084 16 N -0.300 5.300 17 C 0.112 3.888 18 H 0.021 0.979 19 C -0.553 4.553 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.724 3.276 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.144 4.144 28 C -0.178 4.178 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.217 0.783 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.267 0.733 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.158 0.842 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.108 0.892 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.896 6.457 -9.713 23.063 hybrid contribution 1.340 -0.755 -0.491 1.614 sum -18.556 5.702 -10.205 21.931 Atomic orbital electron populations 1.21803 0.92680 1.02935 1.03476 1.23000 0.95138 0.80066 1.02748 1.86517 1.23695 1.32235 1.84839 1.19641 0.80417 0.88109 0.72521 1.90867 1.60254 1.42100 1.47284 1.18840 0.90835 0.92352 1.29259 1.23993 1.00234 0.88157 0.95160 1.77234 0.85833 1.21915 1.25676 1.48725 1.07182 1.03236 1.53827 1.22056 0.81136 0.96140 1.05015 1.17803 0.88004 0.82383 0.94473 1.43110 1.24609 1.36014 1.28110 1.21636 0.83425 0.84072 0.80141 1.90735 1.74650 1.38742 1.32652 1.21780 0.91949 0.98951 0.95769 1.60428 1.26462 1.08778 1.34359 1.19180 0.85635 0.88876 0.95137 0.97940 1.21108 0.98972 1.01587 1.33598 0.92185 1.24873 0.98326 0.94833 0.95743 1.69861 1.27661 1.10137 1.45049 0.86595 0.81492 0.78724 0.80821 1.20142 1.21322 1.20364 1.21479 0.98575 0.99309 0.95000 1.21449 1.00491 0.98050 0.97846 0.91444 0.91517 0.90276 0.91233 0.91141 0.78298 0.89092 0.89490 0.88656 0.73331 0.87889 0.92677 0.84244 0.92798 0.97177 0.89160 0.96689 0.92574 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.36 -3.95 10.07 -40.82 -0.41 -4.36 16 4 C 0.55 7.29 7.94 34.17 0.27 7.57 16 5 O -0.52 -7.96 16.06 -19.34 -0.31 -8.27 16 6 C -0.30 -3.85 6.15 -104.86 -0.64 -4.50 16 7 C 0.11 1.24 11.86 -16.97 -0.20 1.04 16 8 N -0.29 -3.58 12.47 30.88 0.39 -3.19 16 9 N -0.35 -4.40 3.96 -66.73 -0.26 -4.66 16 10 C 0.10 0.98 10.15 59.85 0.61 1.58 16 11 C 0.40 5.38 6.62 -153.43 -1.02 4.36 16 12 N -0.66 -8.48 4.45 -11.08 -0.05 -8.53 16 13 C 0.52 8.09 7.16 -10.99 -0.08 8.01 16 14 O -0.50 -9.38 15.25 5.56 0.08 -9.30 16 15 C 0.05 0.79 5.94 -4.98 -0.03 0.76 16 16 N -0.67 -13.71 5.02 -109.22 -0.55 -14.25 16 17 C 0.22 5.21 2.30 -68.87 -0.16 5.05 16 18 H 0.00 0.08 7.85 -51.93 -0.41 -0.33 16 19 C -0.51 -13.45 7.40 -34.44 -0.26 -13.70 16 20 H 0.06 1.57 7.61 -52.48 -0.40 1.17 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.47 11.30 55.43 0.63 -23.84 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.11 -2.51 5.58 -26.73 -0.15 -2.66 16 28 C -0.12 -2.77 9.52 37.16 0.35 -2.42 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.09 1.01 8.02 -51.93 -0.42 0.60 16 36 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.43 4.48 8.78 -40.82 -0.36 4.12 16 39 H 0.10 1.68 7.40 -51.93 -0.38 1.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.34 6.99 8.12 -39.29 -0.32 6.67 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.01 0.21 7.48 -51.93 -0.39 -0.17 16 44 H 0.09 2.39 5.99 -51.93 -0.31 2.07 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 1.37 7.18 -51.93 -0.37 1.00 16 47 H 0.04 1.00 7.66 -51.92 -0.40 0.60 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -32.63 397.09 -7.40 -40.03 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.09 Total: 7.57 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.78 Total: 7.01 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.15 Total: -54.48 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.64 Total: -21.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.63 -7.40 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563727680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds