Wall clock time and date at job start Tue Mar 31 2020 21:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47303 * 2 1 4 4 C 1.34822 * 117.00203 * 180.02562 * 3 2 1 5 5 O 1.21593 * 120.00087 * 359.97438 * 4 3 2 6 6 C 1.46750 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.41473 * 126.51444 * 0.02562 * 6 4 3 8 8 N 1.30307 * 108.16804 * 180.02562 * 7 6 4 9 9 N 1.39894 * 109.21242 * 359.97438 * 8 7 6 10 10 C 1.46499 * 125.74350 * 179.97438 * 9 8 7 11 11 C 1.34768 * 108.51136 * 359.73409 * 9 8 7 12 12 N 1.38482 * 126.43080 * 180.29933 * 11 9 8 13 13 C 1.34771 * 120.00289 * 59.43415 * 12 11 9 14 14 O 1.21271 * 120.00054 * 2.64322 * 13 12 11 15 15 C 1.50703 * 120.00308 * 182.65161 * 13 12 11 16 16 N 1.46898 * 109.47504 * 179.97438 * 15 13 12 17 17 C 1.46897 * 110.99882 * 174.48173 * 16 15 13 18 18 H 1.08994 * 109.47300 * 34.54345 * 17 16 15 19 19 C 1.50703 * 109.47054 * 154.54926 * 17 16 15 20 20 H 1.08008 * 119.99823 * 359.97438 * 19 17 16 21 21 C 1.37877 * 120.00374 * 179.97438 * 19 17 16 22 22 N 1.31514 * 119.99541 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00343 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46919 * 59.99647 * 23 21 19 25 25 H 1.48498 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47104 * 300.00484 * 23 21 19 27 27 C 1.52998 * 109.47089 * 274.54331 * 17 16 15 28 28 C 1.53003 * 109.47539 * 302.95002 * 27 17 16 29 29 H 1.08999 * 109.47151 * 300.00298 * 1 2 3 30 30 H 1.08997 * 109.46890 * 60.00867 * 1 2 3 31 31 H 1.09005 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47558 * 239.99401 * 2 1 3 33 33 H 1.09004 * 109.47229 * 119.99308 * 2 1 3 34 34 H 1.07998 * 125.91163 * 359.97102 * 7 6 4 35 35 H 1.09001 * 109.46879 * 84.88342 * 10 9 8 36 36 H 1.08992 * 109.47266 * 204.88201 * 10 9 8 37 37 H 1.09006 * 109.47255 * 324.88561 * 10 9 8 38 38 H 0.97006 * 119.99679 * 239.42243 * 12 11 9 39 39 H 1.09006 * 109.46934 * 299.99695 * 15 13 12 40 40 H 1.08995 * 109.46849 * 59.99098 * 15 13 12 41 41 H 1.00895 * 110.99696 * 298.43820 * 16 15 13 42 42 H 0.96999 * 120.00154 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.47331 * 62.94929 * 27 17 16 44 44 H 1.09002 * 109.47145 * 182.95006 * 27 17 16 45 45 H 1.09000 * 109.47060 * 184.09724 * 28 27 17 46 46 H 1.08996 * 109.46903 * 304.09922 * 28 27 17 47 47 H 1.09007 * 109.46781 * 64.09963 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5456 -0.0005 5 8 4.0913 0.5813 -0.0005 6 6 3.9115 2.9017 -0.0011 7 6 3.1826 4.1142 -0.0007 8 7 4.0343 5.1003 -0.0021 9 7 5.3350 4.5852 -0.0028 10 6 6.5684 5.3756 -0.0049 11 6 5.2623 3.2395 0.0041 12 7 6.3304 2.3582 0.0116 13 6 7.2253 2.3925 1.0187 14 8 7.0690 3.1621 1.9428 15 6 8.4202 1.4744 0.9967 16 7 9.2366 1.7042 2.1961 17 6 10.3397 0.7374 2.2752 18 1 10.6933 0.5064 1.2704 19 6 11.4678 1.3273 3.0817 20 1 11.3748 2.3213 3.4938 21 6 12.6187 0.5981 3.2935 22 7 12.7317 -0.6124 2.7920 23 14 14.0173 1.3296 4.2925 24 1 13.5356 1.6452 5.6612 25 1 15.1319 0.3516 4.3737 26 1 14.4960 2.5733 3.6372 27 6 9.8468 -0.5445 2.9495 28 6 9.2827 -0.2094 4.3318 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.1065 4.2063 -0.0003 35 1 6.8259 5.6499 1.0182 36 1 7.3769 4.7863 -0.4374 37 1 6.4202 6.2789 -0.5968 38 1 6.4345 1.7162 -0.7081 39 1 8.0820 0.4383 0.9800 40 1 9.0169 1.6761 0.1072 41 1 9.5834 2.6514 2.2213 42 1 13.5412 -1.1256 2.9413 43 1 9.0665 -0.9992 2.3393 44 1 10.6778 -1.2419 3.0556 45 1 8.9986 -1.1301 4.8412 46 1 10.0408 0.3108 4.9172 47 1 8.4067 0.4300 4.2214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563727680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:39 Heat of formation + Delta-G solvation = -61.422459 kcal Electronic energy + Delta-G solvation = -29645.220275 eV Core-core repulsion = 25443.365674 eV Total energy + Delta-G solvation = -4201.854601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.91514 -41.05195 -40.68017 -37.95974 -37.53192 -36.13253 -34.57774 -34.39448 -32.66061 -32.53917 -30.92378 -29.12203 -28.31855 -26.75969 -25.11749 -24.87988 -23.41557 -22.97062 -21.82645 -21.20064 -20.89484 -19.35489 -18.98522 -18.35975 -17.92657 -17.50244 -17.33885 -17.02199 -16.69127 -16.35766 -16.06996 -15.57451 -15.42152 -15.07002 -14.99467 -14.74864 -14.71254 -14.47204 -13.95739 -13.76905 -13.71395 -13.63200 -13.53360 -13.12822 -12.83607 -12.81455 -12.68789 -12.61117 -12.42852 -12.38186 -11.99247 -11.80127 -11.57125 -11.45699 -11.43059 -11.37465 -11.12905 -10.81765 -10.52358 -10.42717 -9.83109 -9.04799 -8.09952 -6.21501 -0.01392 0.85303 0.96633 1.28575 1.43190 1.45379 1.51862 1.69005 1.90962 2.11653 2.43548 3.19112 3.33222 3.57108 3.69151 3.76531 3.92708 4.08155 4.14624 4.19250 4.25738 4.34187 4.40630 4.41575 4.46050 4.53522 4.63961 4.70859 4.77262 4.93494 4.93789 4.99871 5.19539 5.27500 5.29337 5.35048 5.48496 5.52398 5.63160 5.70781 5.78567 5.84031 6.00594 6.28611 6.35323 6.43530 6.72229 6.79401 6.86867 6.99211 7.46953 8.94697 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002611 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.124148 B =10720.078035 C =12104.147168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.351 6.351 4 C 0.548 3.452 5 O -0.544 6.544 6 C -0.309 4.309 7 C 0.123 3.877 8 N -0.300 5.300 9 N -0.351 5.351 10 C 0.093 3.907 11 C 0.382 3.618 12 N -0.646 5.646 13 C 0.530 3.470 14 O -0.533 6.533 15 C 0.050 3.950 16 N -0.674 5.674 17 C 0.226 3.774 18 H -0.017 1.017 19 C -0.525 4.525 20 H 0.054 0.946 21 C 0.021 3.979 22 N -0.913 5.913 23 Si 0.952 3.048 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.271 1.271 27 C -0.102 4.102 28 C -0.108 4.108 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.437 0.563 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.338 0.662 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.520 5.978 -11.433 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.268 6.268 4 C 0.394 3.606 5 O -0.435 6.435 6 C -0.325 4.325 7 C -0.064 4.064 8 N -0.120 5.120 9 N -0.132 5.132 10 C -0.047 4.047 11 C 0.154 3.846 12 N -0.302 5.302 13 C 0.319 3.681 14 O -0.406 6.406 15 C -0.083 4.083 16 N -0.306 5.306 17 C 0.119 3.881 18 H 0.000 1.000 19 C -0.564 4.564 20 H 0.072 0.928 21 C -0.179 4.179 22 N -0.552 5.552 23 Si 0.778 3.222 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.196 1.196 27 C -0.141 4.141 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.280 0.720 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.156 0.844 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.379 7.059 -10.353 24.780 hybrid contribution 1.676 -0.946 -0.361 1.958 sum -19.703 6.113 -10.714 23.246 Atomic orbital electron populations 1.21816 0.90139 1.04320 1.03887 1.23284 0.97089 0.78940 1.02447 1.86520 1.22364 1.33638 1.84256 1.19766 0.80979 0.87934 0.71879 1.90846 1.61008 1.42926 1.48770 1.19039 0.90973 0.92920 1.29527 1.24534 1.01562 0.86871 0.93448 1.77229 0.85978 1.22513 1.26287 1.48942 1.07854 1.03090 1.53307 1.22222 0.80646 0.97098 1.04752 1.17997 0.88233 0.82904 0.95450 1.42788 1.23866 1.35970 1.27617 1.21313 0.83389 0.83293 0.80106 1.90727 1.75477 1.40204 1.34163 1.21783 0.92034 0.99330 0.95140 1.60267 1.25382 1.07944 1.37015 1.18936 0.86126 0.89492 0.93581 0.99990 1.21373 0.99948 1.01414 1.33636 0.92756 1.25547 1.00451 0.95188 0.96698 1.69976 1.28127 1.11052 1.46062 0.85705 0.78924 0.78205 0.79340 1.20223 1.21089 1.19637 1.21379 0.98020 0.98845 0.95842 1.21305 0.99602 0.98590 0.97095 0.91324 0.90766 0.88400 0.91056 0.92032 0.74965 0.90394 0.88766 0.86170 0.72042 0.87656 0.90108 0.84435 0.92897 0.95753 0.91756 0.94931 0.94653 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 10.29 71.98 0.74 -0.65 16 2 C 0.06 0.92 6.20 71.98 0.45 1.37 16 3 O -0.35 -7.31 10.07 -57.34 -0.58 -7.89 16 4 C 0.55 14.10 7.94 70.05 0.56 14.65 16 5 O -0.54 -16.55 16.06 19.53 0.31 -16.24 16 6 C -0.31 -7.64 6.15 -20.02 -0.12 -7.76 16 7 C 0.12 2.49 11.86 85.72 1.02 3.50 16 8 N -0.30 -7.02 12.47 -56.22 -0.70 -7.72 16 9 N -0.35 -8.47 3.96 -365.02 -1.44 -9.92 16 10 C 0.09 1.77 10.15 127.77 1.30 3.07 16 11 C 0.38 9.90 6.62 132.54 0.88 10.77 16 12 N -0.65 -16.01 4.45 -307.36 -1.37 -17.38 16 13 C 0.53 16.19 7.16 87.66 0.63 16.81 16 14 O -0.53 -19.96 15.25 -3.00 -0.05 -20.01 16 15 C 0.05 1.58 5.94 85.56 0.51 2.09 16 16 N -0.67 -27.55 5.02 -499.47 -2.51 -30.06 16 17 C 0.23 10.85 2.30 44.17 0.10 10.95 16 18 H -0.02 -0.89 7.85 -2.39 -0.02 -0.91 16 19 C -0.53 -27.65 7.40 25.60 0.19 -27.46 16 20 H 0.05 2.86 7.61 -2.91 -0.02 2.84 16 21 C 0.02 1.11 5.30 84.65 0.45 1.56 16 22 N -0.91 -50.70 11.30 21.45 0.24 -50.46 16 23 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C -0.10 -4.87 5.58 30.59 0.17 -4.70 16 28 C -0.11 -4.93 9.52 71.98 0.68 -4.24 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.23 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 36 H 0.09 1.62 7.67 -2.39 -0.02 1.61 16 37 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.44 8.75 8.78 -92.70 -0.81 7.94 16 39 H 0.11 3.33 7.40 -2.38 -0.02 3.31 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.34 13.94 8.12 -89.70 -0.73 13.21 16 42 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.02 1.06 7.48 -2.39 -0.02 1.04 16 44 H 0.06 3.43 5.99 -2.39 -0.01 3.42 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.03 1.72 7.18 -2.39 -0.02 1.70 16 47 H 0.04 1.98 7.66 -2.38 -0.02 1.96 16 Total: -1.00 -69.66 397.09 2.94 -66.72 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.53 Total: 28.20 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 7.54 Total: 19.96 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -5.78 Total: -115.53 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.31 Total: -44.13 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -69.66 2.94 -66.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563727680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.298 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds