Wall clock time and date at job start Tue Mar 31 2020 21:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47519 * 2 1 4 4 H 1.09001 * 109.47541 * 305.64466 * 3 2 1 5 5 C 1.53000 * 109.47280 * 185.64173 * 3 2 1 6 6 N 1.46506 * 109.47014 * 180.02562 * 5 3 2 7 7 C 1.34776 * 119.99915 * 180.02562 * 6 5 3 8 8 O 1.21368 * 119.99808 * 359.97438 * 7 6 5 9 9 C 1.49302 * 120.00237 * 180.02562 * 7 6 5 10 10 O 1.21400 * 119.99730 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00237 * 179.97438 * 9 7 6 12 12 C 1.39194 * 119.99808 * 179.97438 * 11 9 7 13 13 C 1.36214 * 126.27818 * 359.68738 * 12 11 9 14 14 C 1.39688 * 107.86167 * 179.84952 * 13 12 11 15 15 C 1.50707 * 125.76907 * 180.16540 * 14 13 12 16 16 N 1.30841 * 108.45980 * 0.42376 * 14 13 12 17 17 N 1.35855 * 126.27048 * 180.02562 * 12 11 9 18 18 C 1.46506 * 126.09736 * 359.97113 * 17 12 11 19 19 C 1.50694 * 109.46799 * 90.00361 * 18 17 12 20 20 H 1.08001 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99919 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99578 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47821 * 60.00012 * 23 21 19 25 25 H 1.48504 * 109.47125 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47244 * 299.99532 * 23 21 19 27 27 O 1.42910 * 109.46892 * 65.64259 * 3 2 1 28 28 C 1.42901 * 113.99797 * 259.22276 * 27 3 2 29 29 H 1.09001 * 109.47642 * 175.42919 * 1 2 3 30 30 H 1.08998 * 109.47479 * 295.43438 * 1 2 3 31 31 H 1.09003 * 109.47092 * 55.42807 * 1 2 3 32 32 H 1.08999 * 109.47108 * 240.00052 * 2 1 3 33 33 H 1.09008 * 109.46882 * 120.00596 * 2 1 3 34 34 H 1.09002 * 109.47335 * 299.99844 * 5 3 2 35 35 H 1.08999 * 109.47007 * 60.00449 * 5 3 2 36 36 H 0.97000 * 119.99577 * 0.02562 * 6 5 3 37 37 H 0.96995 * 119.99749 * 359.97438 * 11 9 7 38 38 H 1.08010 * 126.06593 * 0.02562 * 13 12 11 39 39 H 1.08995 * 109.47168 * 270.27089 * 15 14 13 40 40 H 1.09002 * 109.47171 * 30.27819 * 15 14 13 41 41 H 1.09004 * 109.46757 * 150.27165 * 15 14 13 42 42 H 1.09004 * 109.46885 * 210.00610 * 18 17 12 43 43 H 1.09001 * 109.46945 * 330.00335 * 18 17 12 44 44 H 0.96997 * 119.99934 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.46414 * 174.57655 * 28 27 3 46 46 H 1.08993 * 109.47006 * 294.57324 * 28 27 3 47 47 H 1.09004 * 109.47260 * 54.57766 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5635 1.4447 -0.1418 6 7 4.0519 2.8259 -0.1412 7 6 5.3716 3.0740 -0.2563 8 8 6.1554 2.1532 -0.3601 9 6 5.8695 4.4816 -0.2551 10 8 5.0856 5.4026 -0.1509 11 7 7.1893 4.7297 -0.3698 12 6 7.6533 6.0420 -0.3692 13 6 6.8912 7.1663 -0.2667 14 6 7.7476 8.2693 -0.3037 15 6 7.3276 9.7140 -0.2164 16 7 8.9756 7.8362 -0.4325 17 7 8.9489 6.4364 -0.4772 18 6 10.1109 5.5549 -0.6148 19 6 10.3772 5.2995 -2.0759 20 1 9.7446 5.7492 -2.8269 21 6 11.4294 4.4925 -2.4541 22 7 12.2001 3.9454 -1.5397 23 14 11.7600 4.1765 -4.2652 24 1 12.0318 5.4652 -4.9511 25 1 12.9378 3.2829 -4.4048 26 1 10.5728 3.5295 -4.8796 27 8 1.6750 2.0767 1.2275 28 6 0.5334 2.9300 1.1236 29 1 -0.3634 -1.0244 -0.0819 30 1 -0.3634 0.4413 0.9280 31 1 -0.3633 0.5832 -0.8462 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 4.0070 0.9025 0.6934 35 1 3.8419 0.9609 -1.0780 36 1 3.4255 3.5618 -0.0579 37 1 7.8157 3.9938 -0.4527 38 1 5.8159 7.1991 -0.1707 39 1 7.1316 10.0965 -1.2180 40 1 6.4230 9.7936 0.3865 41 1 8.1246 10.2967 0.2456 42 1 10.9825 6.0296 -0.1641 43 1 9.9112 4.6091 -0.1111 44 1 12.9400 3.3774 -1.8057 45 1 0.2630 3.2971 2.1137 46 1 0.7683 3.7738 0.4749 47 1 -0.3019 2.3699 0.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580263407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:34 Heat of formation + Delta-G solvation = -42.870274 kcal Electronic energy + Delta-G solvation = -29176.115449 eV Core-core repulsion = 24975.065331 eV Total energy + Delta-G solvation = -4201.050118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15238 -40.20525 -39.13563 -38.24831 -35.46491 -34.60434 -33.81090 -33.53429 -32.06428 -29.82201 -29.22038 -28.47056 -26.83733 -26.05048 -25.19306 -23.39132 -22.72211 -21.77376 -20.94709 -19.92013 -19.54841 -18.03925 -17.43581 -16.94653 -16.75827 -16.39548 -15.97761 -15.87419 -15.75794 -15.04969 -14.72000 -14.64511 -14.34805 -14.17034 -13.96213 -13.86690 -13.52844 -13.02670 -12.95397 -12.77015 -12.70888 -12.54702 -12.27241 -12.06560 -11.86326 -11.75443 -11.64697 -11.54743 -11.44628 -11.14429 -11.07739 -10.83820 -10.52870 -10.31043 -10.02764 -9.83024 -9.80834 -9.50350 -9.44330 -8.67854 -7.96372 -7.55198 -6.29567 -4.38229 1.25858 2.11078 2.64167 3.19749 3.22411 3.26082 3.27043 3.28571 3.32272 3.57273 3.81165 4.24105 4.27622 4.35958 4.50044 4.53050 4.81443 4.89406 4.99819 5.03813 5.08750 5.19612 5.23881 5.30646 5.33021 5.48363 5.50429 5.54939 5.63490 5.79331 5.99021 6.00543 6.06378 6.09201 6.15570 6.30387 6.53058 6.73334 6.83449 6.95252 7.03406 7.39668 7.48309 7.55465 7.65602 7.81959 7.84778 8.09896 8.57522 8.70021 9.29166 10.77886 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002783 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.436450 B =10059.049615 C =12085.620608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.076 3.924 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.696 5.696 7 C 0.516 3.484 8 O -0.508 6.508 9 C 0.513 3.487 10 O -0.498 6.498 11 N -0.607 5.607 12 C 0.294 3.706 13 C -0.288 4.288 14 C 0.049 3.951 15 C -0.062 4.062 16 N -0.277 5.277 17 N -0.341 5.341 18 C 0.255 3.745 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.378 6.378 28 C 0.023 3.977 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.429 0.571 38 H 0.163 0.837 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.270 0.730 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.875 -4.724 3.971 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.007 4.007 6 N -0.350 5.350 7 C 0.295 3.705 8 O -0.383 6.383 9 C 0.293 3.707 10 O -0.372 6.372 11 N -0.255 5.255 12 C 0.072 3.928 13 C -0.319 4.319 14 C -0.116 4.116 15 C -0.121 4.121 16 N -0.103 5.103 17 N -0.127 5.127 18 C 0.138 3.862 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 O -0.297 6.297 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.250 0.750 37 H 0.267 0.733 38 H 0.180 0.820 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.257 -4.728 4.062 23.114 hybrid contribution -0.553 -0.649 -1.180 1.456 sum -22.811 -5.378 2.882 23.613 Atomic orbital electron populations 1.21826 0.95262 1.02147 1.01921 1.21917 0.96729 0.95610 1.03560 1.22469 0.93586 0.94449 0.87757 0.90976 1.21722 0.92596 0.82698 1.03680 1.45506 1.06946 1.09746 1.72790 1.19779 0.83377 0.88965 0.78343 1.90837 1.55067 1.45404 1.46961 1.19882 0.82345 0.89692 0.78736 1.90693 1.54961 1.44999 1.46556 1.42296 1.08108 1.06854 1.68205 1.17973 0.86784 0.84417 1.03672 1.21274 1.00911 0.88665 1.21078 1.22016 0.91024 0.96609 1.01908 1.20028 1.01055 0.88866 1.02141 1.77361 1.20271 0.87870 1.24793 1.49591 1.04624 1.04432 1.54003 1.19692 0.81043 0.86806 0.98702 1.21272 1.14977 1.30987 0.90868 0.91745 1.24934 0.95096 0.94931 0.98672 1.69903 1.17723 1.31557 1.33415 0.86392 0.77915 0.78399 0.83873 1.19892 1.20871 1.19928 1.87983 1.47703 1.62442 1.31542 1.22979 0.88099 0.93185 1.03031 0.92245 0.92133 0.92805 0.90439 0.90434 0.89836 0.89394 0.75030 0.73252 0.82014 0.91258 0.91102 0.91472 0.92349 0.93594 0.92064 0.89464 0.93745 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 8.76 37.16 0.33 -0.44 16 2 C -0.14 -0.80 5.64 -26.73 -0.15 -0.95 16 3 C 0.08 0.52 2.35 -26.73 -0.06 0.46 16 4 H 0.07 0.42 7.70 -51.93 -0.40 0.02 16 5 C 0.12 1.04 5.37 -4.04 -0.02 1.02 16 6 N -0.70 -7.67 5.44 -60.77 -0.33 -8.00 16 7 C 0.52 7.52 7.88 -11.65 -0.09 7.43 16 8 O -0.51 -8.64 16.47 5.48 0.09 -8.55 16 9 C 0.51 8.49 7.85 -11.65 -0.09 8.40 16 10 O -0.50 -8.44 13.60 5.45 0.07 -8.37 16 11 N -0.61 -11.45 5.40 -11.80 -0.06 -11.52 16 12 C 0.29 6.29 7.68 -152.86 -1.17 5.11 16 13 C -0.29 -5.77 9.58 -39.77 -0.38 -6.15 16 14 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 15 C -0.06 -0.89 10.44 36.01 0.38 -0.52 16 16 N -0.28 -6.44 12.56 33.64 0.42 -6.01 16 17 N -0.34 -8.10 3.62 -61.47 -0.22 -8.32 16 18 C 0.26 6.54 6.02 -5.19 -0.03 6.51 16 19 C -0.54 -14.94 9.39 -34.44 -0.32 -15.27 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 23 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 O -0.38 -3.12 9.88 -35.23 -0.35 -3.47 16 28 C 0.02 0.14 10.37 101.05 1.05 1.18 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 6.65 -51.93 -0.35 -0.02 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.41 4.10 7.82 -40.82 -0.32 3.78 16 37 H 0.43 8.16 7.46 -40.82 -0.30 7.85 16 38 H 0.16 3.04 5.83 -52.48 -0.31 2.74 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.05 0.21 5.99 -51.93 -0.31 -0.10 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -32.35 397.90 -6.93 -39.28 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.99 Total: 8.05 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -1.27 Total: 8.92 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.54 Total: -58.10 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.18 Total: -20.38 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.35 -6.93 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580263407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.588 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds