Wall clock time and date at job start Tue Mar 31 2020 21:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47519 * 2 1 4 4 H 1.09001 * 109.47541 * 305.64466 * 3 2 1 5 5 C 1.53000 * 109.47280 * 185.64173 * 3 2 1 6 6 N 1.46506 * 109.47014 * 180.02562 * 5 3 2 7 7 C 1.34776 * 119.99915 * 180.02562 * 6 5 3 8 8 O 1.21368 * 119.99808 * 359.97438 * 7 6 5 9 9 C 1.49302 * 120.00237 * 180.02562 * 7 6 5 10 10 O 1.21400 * 119.99730 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00237 * 179.97438 * 9 7 6 12 12 C 1.39194 * 119.99808 * 179.97438 * 11 9 7 13 13 C 1.36214 * 126.27818 * 359.68738 * 12 11 9 14 14 C 1.39688 * 107.86167 * 179.84952 * 13 12 11 15 15 C 1.50707 * 125.76907 * 180.16540 * 14 13 12 16 16 N 1.30841 * 108.45980 * 0.42376 * 14 13 12 17 17 N 1.35855 * 126.27048 * 180.02562 * 12 11 9 18 18 C 1.46506 * 126.09736 * 359.97113 * 17 12 11 19 19 C 1.50694 * 109.46799 * 90.00361 * 18 17 12 20 20 H 1.08001 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99919 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99578 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47821 * 60.00012 * 23 21 19 25 25 H 1.48504 * 109.47125 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47244 * 299.99532 * 23 21 19 27 27 O 1.42910 * 109.46892 * 65.64259 * 3 2 1 28 28 C 1.42901 * 113.99797 * 259.22276 * 27 3 2 29 29 H 1.09001 * 109.47642 * 175.42919 * 1 2 3 30 30 H 1.08998 * 109.47479 * 295.43438 * 1 2 3 31 31 H 1.09003 * 109.47092 * 55.42807 * 1 2 3 32 32 H 1.08999 * 109.47108 * 240.00052 * 2 1 3 33 33 H 1.09008 * 109.46882 * 120.00596 * 2 1 3 34 34 H 1.09002 * 109.47335 * 299.99844 * 5 3 2 35 35 H 1.08999 * 109.47007 * 60.00449 * 5 3 2 36 36 H 0.97000 * 119.99577 * 0.02562 * 6 5 3 37 37 H 0.96995 * 119.99749 * 359.97438 * 11 9 7 38 38 H 1.08010 * 126.06593 * 0.02562 * 13 12 11 39 39 H 1.08995 * 109.47168 * 270.27089 * 15 14 13 40 40 H 1.09002 * 109.47171 * 30.27819 * 15 14 13 41 41 H 1.09004 * 109.46757 * 150.27165 * 15 14 13 42 42 H 1.09004 * 109.46885 * 210.00610 * 18 17 12 43 43 H 1.09001 * 109.46945 * 330.00335 * 18 17 12 44 44 H 0.96997 * 119.99934 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.46414 * 174.57655 * 28 27 3 46 46 H 1.08993 * 109.47006 * 294.57324 * 28 27 3 47 47 H 1.09004 * 109.47260 * 54.57766 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5635 1.4447 -0.1418 6 7 4.0519 2.8259 -0.1412 7 6 5.3716 3.0740 -0.2563 8 8 6.1554 2.1532 -0.3601 9 6 5.8695 4.4816 -0.2551 10 8 5.0856 5.4026 -0.1509 11 7 7.1893 4.7297 -0.3698 12 6 7.6533 6.0420 -0.3692 13 6 6.8912 7.1663 -0.2667 14 6 7.7476 8.2693 -0.3037 15 6 7.3276 9.7140 -0.2164 16 7 8.9756 7.8362 -0.4325 17 7 8.9489 6.4364 -0.4772 18 6 10.1109 5.5549 -0.6148 19 6 10.3772 5.2995 -2.0759 20 1 9.7446 5.7492 -2.8269 21 6 11.4294 4.4925 -2.4541 22 7 12.2001 3.9454 -1.5397 23 14 11.7600 4.1765 -4.2652 24 1 12.0318 5.4652 -4.9511 25 1 12.9378 3.2829 -4.4048 26 1 10.5728 3.5295 -4.8796 27 8 1.6750 2.0767 1.2275 28 6 0.5334 2.9300 1.1236 29 1 -0.3634 -1.0244 -0.0819 30 1 -0.3634 0.4413 0.9280 31 1 -0.3633 0.5832 -0.8462 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 4.0070 0.9025 0.6934 35 1 3.8419 0.9609 -1.0780 36 1 3.4255 3.5618 -0.0579 37 1 7.8157 3.9938 -0.4527 38 1 5.8159 7.1991 -0.1707 39 1 7.1316 10.0965 -1.2180 40 1 6.4230 9.7936 0.3865 41 1 8.1246 10.2967 0.2456 42 1 10.9825 6.0296 -0.1641 43 1 9.9112 4.6091 -0.1111 44 1 12.9400 3.3774 -1.8057 45 1 0.2630 3.2971 2.1137 46 1 0.7683 3.7738 0.4749 47 1 -0.3019 2.3699 0.7031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580263407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:33 Heat of formation + Delta-G solvation = -65.807419 kcal Electronic energy + Delta-G solvation = -29177.110078 eV Core-core repulsion = 24975.065331 eV Total energy + Delta-G solvation = -4202.044747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63974 -41.54923 -40.02290 -39.32921 -36.71411 -35.94793 -35.51474 -34.16319 -33.84935 -30.94634 -30.49889 -29.95810 -27.83530 -27.47818 -26.20853 -24.80031 -24.04290 -22.44077 -22.18131 -21.42500 -20.89247 -19.38335 -18.88702 -18.26448 -18.02933 -17.84720 -17.23994 -16.88946 -16.63494 -16.36911 -16.17459 -15.97683 -15.63223 -15.28309 -15.05503 -14.64178 -14.56327 -14.44683 -14.08496 -14.07616 -13.85120 -13.59773 -13.44433 -13.17229 -13.14231 -12.99517 -12.86324 -12.72038 -12.66579 -12.30238 -12.20589 -12.08637 -12.03906 -11.75197 -11.60957 -11.42339 -10.91769 -10.77871 -10.49575 -10.39761 -9.69322 -9.19001 -8.38211 -6.56010 -0.06359 0.79759 1.08800 1.35727 1.37257 1.46067 1.78158 1.81587 2.10035 2.29688 2.41240 2.76397 2.92447 3.15404 3.65923 3.78693 3.94537 4.04653 4.13209 4.37684 4.48740 4.49302 4.52377 4.54585 4.60897 4.66336 4.69031 4.77143 4.81541 4.85640 4.90062 4.92593 4.92918 5.06071 5.13177 5.16616 5.19638 5.22747 5.40746 5.48050 5.73750 5.76314 5.92771 5.96374 6.15461 6.23637 6.44383 6.58122 6.72247 6.94984 7.15722 8.68572 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002783 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.436450 B =10059.049615 C =12085.620608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.081 3.919 4 H 0.088 0.912 5 C 0.111 3.889 6 N -0.675 5.675 7 C 0.521 3.479 8 O -0.536 6.536 9 C 0.516 3.484 10 O -0.499 6.499 11 N -0.614 5.614 12 C 0.287 3.713 13 C -0.291 4.291 14 C 0.059 3.941 15 C -0.061 4.061 16 N -0.322 5.322 17 N -0.367 5.367 18 C 0.272 3.728 19 C -0.558 4.558 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.915 5.915 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.267 1.267 27 O -0.400 6.400 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.421 0.579 37 H 0.425 0.575 38 H 0.178 0.822 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.275 0.725 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.247 -4.627 3.030 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.022 3.978 4 H 0.106 0.894 5 C -0.011 4.011 6 N -0.328 5.328 7 C 0.300 3.700 8 O -0.413 6.413 9 C 0.298 3.702 10 O -0.372 6.372 11 N -0.262 5.262 12 C 0.066 3.934 13 C -0.322 4.322 14 C -0.106 4.106 15 C -0.119 4.119 16 N -0.147 5.147 17 N -0.152 5.152 18 C 0.153 3.847 19 C -0.596 4.596 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.192 1.192 27 O -0.319 6.319 28 C -0.078 4.078 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.263 0.737 38 H 0.195 0.805 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.068 0.932 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.701 -4.625 3.139 25.325 hybrid contribution 0.032 -0.638 -0.813 1.034 sum -24.669 -5.263 2.326 25.331 Atomic orbital electron populations 1.21813 0.94498 1.02635 1.02038 1.21913 0.97339 0.94707 1.03702 1.22487 0.91881 0.95426 0.87967 0.89403 1.21966 0.94183 0.81098 1.03852 1.45516 1.05588 1.11172 1.70484 1.19417 0.84329 0.87473 0.78754 1.90834 1.55959 1.45598 1.48940 1.20296 0.81449 0.90742 0.77732 1.90666 1.54733 1.45455 1.46337 1.42442 1.08962 1.05881 1.68941 1.18382 0.86179 0.85843 1.03016 1.21550 1.01461 0.88272 1.20920 1.22929 0.89794 0.99031 0.98831 1.20256 1.02475 0.85264 1.03896 1.77322 1.22444 0.87675 1.27220 1.49360 1.04837 1.04769 1.56277 1.19227 0.81185 0.86714 0.97596 1.21383 1.15316 1.31448 0.91440 0.93192 1.25747 0.94606 0.94392 1.02993 1.69988 1.18072 1.31844 1.35352 0.85413 0.78234 0.78346 0.78572 1.19807 1.19607 1.19226 1.87956 1.48698 1.62966 1.32308 1.23120 0.87843 0.93241 1.03594 0.91743 0.92573 0.91982 0.89374 0.91288 0.90695 0.88444 0.74142 0.73662 0.80461 0.89498 0.88196 0.90679 0.95073 0.94033 0.91612 0.89129 0.93231 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.76 71.98 0.63 -0.56 16 2 C -0.14 -1.33 5.64 30.59 0.17 -1.15 16 3 C 0.08 0.95 2.35 30.59 0.07 1.02 16 4 H 0.09 0.77 7.70 -2.39 -0.02 0.76 16 5 C 0.11 1.84 5.37 86.38 0.46 2.30 16 6 N -0.67 -13.95 5.44 -464.54 -2.53 -16.48 16 7 C 0.52 14.92 7.88 87.22 0.69 15.60 16 8 O -0.54 -18.27 16.47 -3.30 -0.05 -18.32 16 9 C 0.52 16.89 7.85 87.22 0.68 17.57 16 10 O -0.50 -16.23 13.60 -3.40 -0.05 -16.27 16 11 N -0.61 -23.60 5.40 -309.58 -1.67 -25.28 16 12 C 0.29 12.48 7.68 131.25 1.01 13.48 16 13 C -0.29 -11.41 9.58 22.15 0.21 -11.20 16 14 C 0.06 2.30 7.20 43.06 0.31 2.61 16 15 C -0.06 -1.58 10.44 71.24 0.74 -0.84 16 16 N -0.32 -15.16 12.56 -47.49 -0.60 -15.76 16 17 N -0.37 -18.00 3.62 -348.38 -1.26 -19.26 16 18 C 0.27 14.59 6.02 85.63 0.52 15.11 16 19 C -0.56 -31.62 9.39 25.60 0.24 -31.38 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 21 C 0.02 1.34 5.46 84.66 0.46 1.81 16 22 N -0.91 -52.28 13.29 21.45 0.28 -51.99 16 23 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 O -0.40 -5.95 9.88 -148.98 -1.47 -7.43 16 28 C 0.02 0.17 10.37 113.37 1.18 1.35 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.49 6.65 -2.39 -0.02 0.48 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.42 7.55 7.82 -92.71 -0.72 6.83 16 37 H 0.43 16.83 7.46 -92.71 -0.69 16.14 16 38 H 0.18 6.33 5.83 -2.91 -0.02 6.32 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 2.22 7.52 -2.39 -0.02 2.20 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.06 0.42 5.99 -2.38 -0.01 0.40 16 Total: -1.00 -70.55 397.90 1.65 -68.90 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.41 Total: 30.49 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 7.38 Total: 25.72 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -5.77 Total: -128.77 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.57 Total: -42.02 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.55 1.65 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580263407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.090 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds