Wall clock time and date at job start Tue Mar 31 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46975 * 2 1 4 4 H 1.08995 * 109.47506 * 57.75769 * 3 2 1 5 5 C 1.52997 * 109.47296 * 177.76367 * 3 2 1 6 6 N 1.46496 * 109.47484 * 185.35579 * 5 3 2 7 7 C 1.34777 * 120.00414 * 176.40471 * 6 5 3 8 8 O 1.21366 * 119.99590 * 359.97438 * 7 6 5 9 9 C 1.49304 * 120.00076 * 180.02562 * 7 6 5 10 10 O 1.21383 * 120.00218 * 359.97438 * 9 7 6 11 11 N 1.34781 * 119.99879 * 179.97438 * 9 7 6 12 12 C 1.39195 * 120.00071 * 179.97438 * 11 9 7 13 13 C 1.36221 * 126.27371 * 0.18713 * 12 11 9 14 14 C 1.39689 * 107.85868 * 180.26361 * 13 12 11 15 15 C 1.50699 * 125.76835 * 179.72062 * 14 13 12 16 16 N 1.30840 * 108.46087 * 359.73329 * 14 13 12 17 17 N 1.35859 * 126.27422 * 179.97438 * 12 11 9 18 18 C 1.46493 * 126.09406 * 0.02562 * 17 12 11 19 19 C 1.50697 * 109.47399 * 269.71216 * 18 17 12 20 20 H 1.07997 * 119.99630 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00058 * 179.72861 * 19 18 17 22 22 N 1.31511 * 119.99774 * 180.27517 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 0.27223 * 21 19 18 24 24 H 1.48503 * 109.46780 * 90.00354 * 23 21 19 25 25 H 1.48501 * 109.46982 * 210.00060 * 23 21 19 26 26 H 1.48494 * 109.46896 * 330.00247 * 23 21 19 27 27 O 1.42902 * 109.46908 * 297.75730 * 3 2 1 28 28 C 1.42899 * 113.99997 * 120.64367 * 27 3 2 29 29 H 1.09003 * 109.46803 * 185.41810 * 1 2 3 30 30 H 1.08993 * 109.47400 * 305.41952 * 1 2 3 31 31 H 1.09003 * 109.46922 * 65.41939 * 1 2 3 32 32 H 1.08997 * 109.47523 * 239.99659 * 2 1 3 33 33 H 1.09001 * 109.47152 * 119.99326 * 2 1 3 34 34 H 1.09002 * 109.47504 * 65.35154 * 5 3 2 35 35 H 1.09004 * 109.46907 * 305.35266 * 5 3 2 36 36 H 0.97001 * 120.00012 * 356.39172 * 6 5 3 37 37 H 0.96999 * 120.00127 * 359.97438 * 11 9 7 38 38 H 1.08003 * 126.06476 * 359.97438 * 13 12 11 39 39 H 1.09005 * 109.46888 * 269.99353 * 15 14 13 40 40 H 1.09003 * 109.47480 * 29.99214 * 15 14 13 41 41 H 1.09001 * 109.47516 * 149.99701 * 15 14 13 42 42 H 1.09005 * 109.47037 * 149.70913 * 18 17 12 43 43 H 1.09008 * 109.47196 * 29.71578 * 18 17 12 44 44 H 0.96999 * 119.99931 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47214 * 183.19615 * 28 27 3 46 46 H 1.08997 * 109.47530 * 303.20327 * 28 27 3 47 47 H 1.09005 * 109.46656 * 63.19965 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6442 1.9679 0.8691 5 6 3.5689 1.4430 0.0563 6 7 4.0525 2.8198 0.1852 7 6 5.3710 3.0606 0.3266 8 8 6.1577 2.1366 0.3476 9 6 5.8637 4.4638 0.4585 10 8 5.0769 5.3878 0.4380 11 7 7.1822 4.7045 0.6005 12 6 7.6417 6.0127 0.7229 13 6 6.8761 7.1394 0.7197 14 6 7.7286 8.2370 0.8600 15 6 7.3043 9.6825 0.8999 16 7 8.9578 7.7980 0.9507 17 7 8.9355 6.3996 0.8717 18 6 10.1000 5.5129 0.9316 19 6 10.3667 5.1299 2.3645 20 1 9.7323 5.5094 3.1518 21 6 11.4174 4.2909 2.6698 22 7 11.6467 3.9523 3.9197 23 14 12.5150 3.6350 1.3079 24 1 13.6487 4.5697 1.0927 25 1 13.0400 2.3008 1.6946 26 1 11.7288 3.5133 0.0540 27 8 1.6071 2.1007 -1.1923 28 6 0.8005 3.2568 -0.9579 29 1 -0.3633 -1.0231 0.0970 30 1 -0.3634 0.5955 0.8374 31 1 -0.3633 0.4275 -0.9346 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9663 1.0024 -0.8581 35 1 3.9010 0.8594 0.9150 36 1 3.4237 3.5583 0.1686 37 1 7.8110 3.9661 0.6173 38 1 5.8013 7.1775 0.6209 39 1 7.2979 10.0873 -0.1122 40 1 6.3042 9.7560 1.3270 41 1 8.0041 10.2498 1.5136 42 1 10.9704 6.0282 0.5252 43 1 9.9034 4.6148 0.3460 44 1 12.3857 3.3618 4.1344 45 1 0.4659 3.6658 -1.9112 46 1 -0.0659 2.9797 -0.3573 47 1 1.3862 4.0067 -0.4262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580263408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:38 Heat of formation + Delta-G solvation = -37.762138 kcal Electronic energy + Delta-G solvation = -29248.358039 eV Core-core repulsion = 25047.529427 eV Total energy + Delta-G solvation = -4200.828613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24534 -40.29241 -39.14127 -38.29172 -35.50438 -34.67163 -33.86728 -33.61504 -32.17443 -29.76877 -29.50827 -28.59198 -26.91335 -26.35532 -25.27737 -23.40514 -22.41630 -21.77910 -20.99624 -19.99566 -19.62218 -18.11769 -17.42988 -17.19085 -16.95639 -16.54960 -16.04032 -15.88878 -15.70458 -15.07712 -14.85492 -14.60868 -14.33829 -14.26818 -13.96632 -13.88499 -13.68146 -13.22505 -13.06217 -12.78797 -12.64304 -12.61790 -12.36961 -12.05178 -11.94712 -11.92929 -11.79455 -11.59927 -11.55029 -11.16835 -11.14862 -10.81451 -10.62948 -10.26357 -10.09974 -9.89838 -9.74743 -9.56996 -9.50316 -8.83154 -8.03505 -7.63476 -6.31102 -4.35876 1.18726 2.03098 2.54749 3.09921 3.14077 3.17437 3.19233 3.24109 3.27625 3.49219 3.69083 4.17520 4.22408 4.28321 4.48240 4.54164 4.82786 4.92502 4.94681 4.98770 5.09411 5.16509 5.22236 5.27681 5.34762 5.47844 5.48253 5.53216 5.64529 5.83476 5.93821 5.94117 5.97764 5.98353 6.09393 6.18951 6.32120 6.47540 6.66723 6.72346 6.88331 7.20652 7.29993 7.37872 7.46473 7.72972 7.95560 8.24706 8.46970 8.73697 9.23334 10.81112 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.002838 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.074144 B = 9862.529833 C =11868.729106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.076 3.924 4 H 0.074 0.926 5 C 0.107 3.893 6 N -0.698 5.698 7 C 0.516 3.484 8 O -0.507 6.507 9 C 0.514 3.486 10 O -0.497 6.497 11 N -0.608 5.608 12 C 0.297 3.703 13 C -0.284 4.284 14 C 0.054 3.946 15 C -0.063 4.063 16 N -0.275 5.275 17 N -0.340 5.340 18 C 0.228 3.772 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.264 1.264 27 O -0.378 6.378 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.411 0.589 37 H 0.427 0.573 38 H 0.165 0.835 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.270 0.730 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 -4.126 -9.344 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.017 4.017 6 N -0.352 5.352 7 C 0.296 3.704 8 O -0.382 6.382 9 C 0.294 3.706 10 O -0.371 6.371 11 N -0.256 5.256 12 C 0.076 3.924 13 C -0.316 4.316 14 C -0.111 4.111 15 C -0.122 4.122 16 N -0.100 5.100 17 N -0.126 5.126 18 C 0.109 3.891 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 O -0.297 6.297 28 C -0.070 4.070 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.247 0.753 37 H 0.266 0.734 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.034 -4.163 -9.261 23.356 hybrid contribution -0.037 -0.743 -0.264 0.790 sum -21.071 -4.906 -9.525 23.638 Atomic orbital electron populations 1.21717 0.95028 1.01935 1.02094 1.21759 0.96894 0.94750 1.03464 1.22493 0.92482 0.94767 0.88541 0.90805 1.21926 0.93407 0.82552 1.03785 1.45577 1.06989 1.10007 1.72642 1.19764 0.83424 0.88903 0.78337 1.90833 1.54805 1.44992 1.47531 1.19888 0.82290 0.89712 0.78664 1.90689 1.54651 1.44616 1.47115 1.42287 1.08241 1.06972 1.68059 1.17950 0.86573 0.84562 1.03364 1.21291 1.00990 0.88676 1.20625 1.22041 0.90932 0.96727 1.01429 1.20046 1.01241 0.88692 1.02197 1.77372 1.20335 0.87405 1.24857 1.49125 1.04235 1.04543 1.54656 1.20017 0.82213 0.87162 0.99727 1.21155 1.16136 1.30670 0.90543 0.90024 1.24813 0.96624 0.95253 0.95682 1.69865 1.30006 1.34566 1.17430 0.86897 0.81686 0.79223 0.82275 1.19488 1.20395 1.18896 1.87971 1.69724 1.42160 1.29824 1.22931 0.94030 0.87424 1.02605 0.92345 0.92949 0.92093 0.90510 0.90338 0.89868 0.89357 0.75270 0.73388 0.81822 0.91230 0.90959 0.91291 0.92955 0.94083 0.91995 0.89337 0.93753 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.72 37.16 0.36 -0.42 16 2 C -0.13 -0.75 5.66 -26.73 -0.15 -0.90 16 3 C 0.08 0.52 2.31 -26.73 -0.06 0.45 16 4 H 0.07 0.43 7.60 -51.93 -0.39 0.04 16 5 C 0.11 0.94 5.34 -4.05 -0.02 0.92 16 6 N -0.70 -7.48 5.50 -60.78 -0.33 -7.81 16 7 C 0.52 7.34 7.88 -11.65 -0.09 7.25 16 8 O -0.51 -8.42 16.48 5.48 0.09 -8.33 16 9 C 0.51 8.28 7.85 -11.65 -0.09 8.19 16 10 O -0.50 -8.17 13.60 5.47 0.07 -8.10 16 11 N -0.61 -11.15 5.40 -11.80 -0.06 -11.22 16 12 C 0.30 6.20 7.68 -152.85 -1.17 5.02 16 13 C -0.28 -5.55 9.58 -39.77 -0.38 -5.93 16 14 C 0.05 1.04 7.20 -82.47 -0.59 0.44 16 15 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 16 N -0.27 -6.20 12.56 33.64 0.42 -5.78 16 17 N -0.34 -7.85 3.62 -61.47 -0.22 -8.07 16 18 C 0.23 5.46 5.09 -5.20 -0.03 5.43 16 19 C -0.55 -15.25 9.94 -34.44 -0.34 -15.59 16 20 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -26.16 13.96 55.43 0.77 -25.39 16 23 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 27 O -0.38 -3.04 9.79 -35.23 -0.34 -3.38 16 28 C 0.03 0.16 10.68 101.05 1.08 1.24 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.41 3.90 7.03 -40.82 -0.29 3.61 16 37 H 0.43 7.80 7.45 -40.82 -0.30 7.49 16 38 H 0.16 2.99 5.83 -52.48 -0.31 2.68 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.24 7.58 -51.93 -0.39 0.85 16 43 H 0.04 0.92 6.56 -51.92 -0.34 0.58 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.04 0.25 7.28 -51.93 -0.38 -0.13 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -33.51 397.13 -6.56 -40.07 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.05 Total: 8.74 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.22 Total: 7.75 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.58 Total: -58.27 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.18 Total: -19.80 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.51 -6.56 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580263408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds