Wall clock time and date at job start Tue Mar 31 2020 21:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46975 * 2 1 4 4 H 1.08995 * 109.47506 * 57.75769 * 3 2 1 5 5 C 1.52997 * 109.47296 * 177.76367 * 3 2 1 6 6 N 1.46496 * 109.47484 * 185.35579 * 5 3 2 7 7 C 1.34777 * 120.00414 * 176.40471 * 6 5 3 8 8 O 1.21366 * 119.99590 * 359.97438 * 7 6 5 9 9 C 1.49304 * 120.00076 * 180.02562 * 7 6 5 10 10 O 1.21383 * 120.00218 * 359.97438 * 9 7 6 11 11 N 1.34781 * 119.99879 * 179.97438 * 9 7 6 12 12 C 1.39195 * 120.00071 * 179.97438 * 11 9 7 13 13 C 1.36221 * 126.27371 * 0.18713 * 12 11 9 14 14 C 1.39689 * 107.85868 * 180.26361 * 13 12 11 15 15 C 1.50699 * 125.76835 * 179.72062 * 14 13 12 16 16 N 1.30840 * 108.46087 * 359.73329 * 14 13 12 17 17 N 1.35859 * 126.27422 * 179.97438 * 12 11 9 18 18 C 1.46493 * 126.09406 * 0.02562 * 17 12 11 19 19 C 1.50697 * 109.47399 * 269.71216 * 18 17 12 20 20 H 1.07997 * 119.99630 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00058 * 179.72861 * 19 18 17 22 22 N 1.31511 * 119.99774 * 180.27517 * 21 19 18 23 23 Si 1.86804 * 119.99923 * 0.27223 * 21 19 18 24 24 H 1.48503 * 109.46780 * 90.00354 * 23 21 19 25 25 H 1.48501 * 109.46982 * 210.00060 * 23 21 19 26 26 H 1.48494 * 109.46896 * 330.00247 * 23 21 19 27 27 O 1.42902 * 109.46908 * 297.75730 * 3 2 1 28 28 C 1.42899 * 113.99997 * 120.64367 * 27 3 2 29 29 H 1.09003 * 109.46803 * 185.41810 * 1 2 3 30 30 H 1.08993 * 109.47400 * 305.41952 * 1 2 3 31 31 H 1.09003 * 109.46922 * 65.41939 * 1 2 3 32 32 H 1.08997 * 109.47523 * 239.99659 * 2 1 3 33 33 H 1.09001 * 109.47152 * 119.99326 * 2 1 3 34 34 H 1.09002 * 109.47504 * 65.35154 * 5 3 2 35 35 H 1.09004 * 109.46907 * 305.35266 * 5 3 2 36 36 H 0.97001 * 120.00012 * 356.39172 * 6 5 3 37 37 H 0.96999 * 120.00127 * 359.97438 * 11 9 7 38 38 H 1.08003 * 126.06476 * 359.97438 * 13 12 11 39 39 H 1.09005 * 109.46888 * 269.99353 * 15 14 13 40 40 H 1.09003 * 109.47480 * 29.99214 * 15 14 13 41 41 H 1.09001 * 109.47516 * 149.99701 * 15 14 13 42 42 H 1.09005 * 109.47037 * 149.70913 * 18 17 12 43 43 H 1.09008 * 109.47196 * 29.71578 * 18 17 12 44 44 H 0.96999 * 119.99931 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47214 * 183.19615 * 28 27 3 46 46 H 1.08997 * 109.47530 * 303.20327 * 28 27 3 47 47 H 1.09005 * 109.46656 * 63.19965 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6442 1.9679 0.8691 5 6 3.5689 1.4430 0.0563 6 7 4.0525 2.8198 0.1852 7 6 5.3710 3.0606 0.3266 8 8 6.1577 2.1366 0.3476 9 6 5.8637 4.4638 0.4585 10 8 5.0769 5.3878 0.4380 11 7 7.1822 4.7045 0.6005 12 6 7.6417 6.0127 0.7229 13 6 6.8761 7.1394 0.7197 14 6 7.7286 8.2370 0.8600 15 6 7.3043 9.6825 0.8999 16 7 8.9578 7.7980 0.9507 17 7 8.9355 6.3996 0.8717 18 6 10.1000 5.5129 0.9316 19 6 10.3667 5.1299 2.3645 20 1 9.7323 5.5094 3.1518 21 6 11.4174 4.2909 2.6698 22 7 11.6467 3.9523 3.9197 23 14 12.5150 3.6350 1.3079 24 1 13.6487 4.5697 1.0927 25 1 13.0400 2.3008 1.6946 26 1 11.7288 3.5133 0.0540 27 8 1.6071 2.1007 -1.1923 28 6 0.8005 3.2568 -0.9579 29 1 -0.3633 -1.0231 0.0970 30 1 -0.3634 0.5955 0.8374 31 1 -0.3633 0.4275 -0.9346 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9663 1.0024 -0.8581 35 1 3.9010 0.8594 0.9150 36 1 3.4237 3.5583 0.1686 37 1 7.8110 3.9661 0.6173 38 1 5.8013 7.1775 0.6209 39 1 7.2979 10.0873 -0.1122 40 1 6.3042 9.7560 1.3270 41 1 8.0041 10.2498 1.5136 42 1 10.9704 6.0282 0.5252 43 1 9.9034 4.6148 0.3460 44 1 12.3857 3.3618 4.1344 45 1 0.4659 3.6658 -1.9112 46 1 -0.0659 2.9797 -0.3573 47 1 1.3862 4.0067 -0.4262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580263408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:37 Heat of formation + Delta-G solvation = -62.703956 kcal Electronic energy + Delta-G solvation = -29249.439598 eV Core-core repulsion = 25047.529427 eV Total energy + Delta-G solvation = -4201.910171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68460 -41.59099 -40.04541 -39.31251 -36.73817 -35.93231 -35.50143 -34.28481 -34.00977 -31.23178 -30.51336 -29.95083 -28.03986 -27.52086 -26.27992 -24.51896 -23.99174 -22.48398 -22.17095 -21.45125 -20.92260 -19.42387 -19.29267 -18.35202 -18.02002 -17.90752 -17.27588 -16.90819 -16.59425 -16.34301 -16.17594 -15.85491 -15.67593 -15.26137 -15.07000 -14.90581 -14.66138 -14.53363 -14.20089 -14.15009 -13.93418 -13.77978 -13.57259 -13.17830 -13.11756 -13.02920 -12.85540 -12.59459 -12.49997 -12.28119 -12.23142 -12.03943 -11.92994 -11.84585 -11.62973 -11.46318 -10.96887 -10.94680 -10.53263 -10.45025 -9.69079 -9.21676 -8.45423 -6.57627 -0.09600 0.74508 1.04828 1.31764 1.33812 1.42671 1.72721 1.78524 2.06767 2.21944 2.35479 2.76496 2.86425 3.11011 3.63204 3.72259 3.93290 4.04780 4.08551 4.39291 4.41021 4.44886 4.45963 4.53143 4.54300 4.58293 4.58673 4.67213 4.79179 4.83777 4.86885 4.91707 4.93885 5.05101 5.08091 5.14414 5.15043 5.18027 5.22513 5.43154 5.71434 5.80777 5.88948 6.03012 6.19179 6.22209 6.43703 6.49343 6.68361 6.88607 7.06892 8.71022 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.002838 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.074144 B = 9862.529833 C =11868.729106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.080 3.920 4 H 0.088 0.912 5 C 0.103 3.897 6 N -0.678 5.678 7 C 0.521 3.479 8 O -0.534 6.534 9 C 0.516 3.484 10 O -0.498 6.498 11 N -0.615 5.615 12 C 0.290 3.710 13 C -0.289 4.289 14 C 0.062 3.938 15 C -0.062 4.062 16 N -0.318 5.318 17 N -0.366 5.366 18 C 0.237 3.763 19 C -0.554 4.554 20 H 0.025 0.975 21 C 0.025 3.975 22 N -0.933 5.933 23 Si 0.948 3.052 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.238 1.238 27 O -0.396 6.396 28 C 0.021 3.979 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.419 0.581 37 H 0.426 0.574 38 H 0.179 0.821 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.275 0.725 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.080 -4.282 -11.053 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.022 3.978 4 H 0.106 0.894 5 C -0.020 4.020 6 N -0.331 5.331 7 C 0.300 3.700 8 O -0.411 6.411 9 C 0.298 3.702 10 O -0.371 6.371 11 N -0.263 5.263 12 C 0.068 3.932 13 C -0.321 4.321 14 C -0.104 4.104 15 C -0.120 4.120 16 N -0.143 5.143 17 N -0.152 5.152 18 C 0.117 3.883 19 C -0.592 4.592 20 H 0.044 0.956 21 C -0.176 4.176 22 N -0.571 5.571 23 Si 0.769 3.231 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.161 1.161 27 O -0.315 6.315 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.264 0.736 38 H 0.196 0.804 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.076 0.924 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.644 -4.302 -10.985 25.533 hybrid contribution 0.237 -0.620 0.337 0.744 sum -22.407 -4.922 -10.648 25.292 Atomic orbital electron populations 1.21697 0.94477 1.02408 1.01969 1.21768 0.97309 0.93935 1.03743 1.22513 0.90832 0.95664 0.88800 0.89441 1.22150 0.94954 0.81137 1.03745 1.45593 1.05709 1.11358 1.70432 1.19423 0.84348 0.87476 0.78715 1.90827 1.55662 1.45172 1.49418 1.20296 0.81479 0.90704 0.77736 1.90664 1.54461 1.45063 1.46916 1.42424 1.09077 1.06054 1.68723 1.18355 0.86151 0.85931 1.02724 1.21570 1.01532 0.88401 1.20554 1.22930 0.89815 0.99074 0.98549 1.20269 1.02437 0.85227 1.04061 1.77324 1.22381 0.87413 1.27155 1.49012 1.04607 1.04869 1.56692 1.19772 0.83217 0.88204 0.97107 1.21207 1.15628 1.30852 0.91515 0.95641 1.25813 0.98079 0.95181 0.98513 1.70018 1.31145 1.35702 1.20191 0.85719 0.79447 0.78480 0.79452 1.18678 1.19812 1.16068 1.87954 1.70133 1.42891 1.30554 1.23073 0.94320 0.86870 1.03295 0.91758 0.92314 0.92801 0.91094 0.89265 0.90468 0.88778 0.74355 0.73581 0.80398 0.88742 0.88507 0.90988 0.92606 0.92040 0.91609 0.88814 0.92399 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.72 71.98 0.70 -0.57 16 2 C -0.13 -1.25 5.66 30.59 0.17 -1.08 16 3 C 0.08 0.94 2.31 30.59 0.07 1.02 16 4 H 0.09 0.80 7.60 -2.39 -0.02 0.78 16 5 C 0.10 1.66 5.34 86.38 0.46 2.12 16 6 N -0.68 -13.57 5.50 -464.56 -2.55 -16.12 16 7 C 0.52 14.43 7.88 87.22 0.69 15.12 16 8 O -0.53 -17.53 16.48 -3.30 -0.05 -17.58 16 9 C 0.52 16.33 7.85 87.22 0.68 17.02 16 10 O -0.50 -15.72 13.60 -3.35 -0.05 -15.77 16 11 N -0.61 -22.64 5.40 -309.58 -1.67 -24.31 16 12 C 0.29 12.13 7.68 131.25 1.01 13.14 16 13 C -0.29 -11.06 9.58 22.15 0.21 -10.85 16 14 C 0.06 2.34 7.20 43.06 0.31 2.65 16 15 C -0.06 -1.57 10.44 71.24 0.74 -0.83 16 16 N -0.32 -14.48 12.56 -47.50 -0.60 -15.08 16 17 N -0.37 -17.14 3.62 -348.39 -1.26 -18.40 16 18 C 0.24 11.44 5.09 85.63 0.44 11.87 16 19 C -0.55 -32.02 9.94 25.60 0.25 -31.77 16 20 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 21 C 0.02 1.40 5.47 84.66 0.46 1.86 16 22 N -0.93 -57.08 13.96 21.45 0.30 -56.78 16 23 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 27 O -0.40 -5.70 9.79 -148.98 -1.46 -7.15 16 28 C 0.02 0.20 10.68 113.37 1.21 1.41 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.54 7.90 -2.39 -0.02 0.52 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.42 7.18 7.03 -92.71 -0.65 6.52 16 37 H 0.43 15.74 7.45 -92.71 -0.69 15.05 16 38 H 0.18 6.19 5.83 -2.91 -0.02 6.18 16 39 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 43 H 0.06 2.69 6.56 -2.38 -0.02 2.68 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.04 0.42 7.28 -2.38 -0.02 0.41 16 Total: -1.00 -75.14 397.13 1.56 -73.58 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.39 Total: 33.18 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 7.41 Total: 21.11 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -5.79 Total: -130.68 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.56 Total: -40.50 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -75.14 1.56 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580263408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.872 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds