Wall clock time and date at job start Tue Mar 31 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34221 * 117.00387 * 2 1 4 4 O 1.20829 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00243 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.46821 * 59.99968 * 5 3 2 7 7 C 1.52999 * 109.47024 * 299.99880 * 5 3 2 8 8 N 1.46500 * 109.46892 * 179.97438 * 5 3 2 9 9 C 1.35841 * 126.06202 * 45.00754 * 8 5 3 10 10 C 1.35733 * 107.56480 * 180.02562 * 9 8 5 11 11 N 1.40844 * 126.07279 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99889 * 179.97438 * 11 10 9 13 13 O 1.21603 * 119.99916 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47008 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00362 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99928 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47172 * 90.00092 * 22 20 18 24 24 H 1.48503 * 109.46928 * 209.99961 * 22 20 18 25 25 H 1.48499 * 109.46876 * 329.99803 * 22 20 18 26 26 C 1.40229 * 107.84614 * 0.23977 * 10 9 8 27 27 N 1.30839 * 108.34702 * 359.59086 * 26 10 9 28 28 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46978 * 300.00312 * 1 2 3 30 30 H 1.09003 * 109.47121 * 59.99963 * 1 2 3 31 31 H 1.09002 * 109.46800 * 179.97438 * 6 5 3 32 32 H 1.08994 * 109.47363 * 299.99929 * 6 5 3 33 33 H 1.08999 * 109.47291 * 60.00502 * 6 5 3 34 34 H 1.08999 * 109.47023 * 299.99771 * 7 5 3 35 35 H 1.09004 * 109.47030 * 60.00192 * 7 5 3 36 36 H 1.08999 * 109.47079 * 179.97438 * 7 5 3 37 37 H 1.08000 * 126.21886 * 0.02831 * 9 8 5 38 38 H 0.97000 * 120.00561 * 0.02562 * 11 10 9 39 39 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 40 40 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 41 41 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 42 42 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 43 43 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 44 44 H 1.08990 * 109.47021 * 299.99845 * 17 16 15 45 45 H 1.09002 * 109.46620 * 60.00037 * 17 16 15 46 46 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 47 47 H 1.08005 * 125.82269 * 179.73459 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1139 0.5808 -1.2484 7 6 4.1129 0.5814 1.2502 8 7 3.9817 2.6796 -0.0002 9 6 3.4636 3.6671 0.7756 10 6 4.1202 4.8150 0.4702 11 7 3.8913 6.0798 1.0462 12 6 4.6190 7.1426 0.6494 13 8 5.4728 7.0097 -0.2061 14 7 4.4003 8.3528 1.2010 15 6 5.1871 9.5092 0.7653 16 6 4.7388 10.7513 1.5380 17 6 5.5609 11.9590 1.0835 18 6 5.1188 13.1826 1.8441 19 1 4.3307 13.1064 2.5785 20 6 5.7213 14.3991 1.6031 21 7 6.6814 14.4918 0.7091 22 14 5.1738 15.9157 2.5465 23 1 5.9785 16.0436 3.7880 24 1 5.3709 17.1215 1.7024 25 1 3.7370 15.7875 2.8988 26 6 5.0628 4.5192 -0.5251 27 7 4.9832 3.2428 -0.8013 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 5.2024 0.6382 -1.2482 32 1 3.8048 -0.4644 -1.2483 33 1 3.7246 1.0748 -2.1386 34 1 3.7228 1.0758 2.1399 35 1 3.8038 -0.4639 1.2503 36 1 5.2014 0.6380 1.2504 37 1 2.6729 3.5584 1.5032 38 1 3.2105 6.1858 1.7289 39 1 3.7189 8.4588 1.8832 40 1 6.2437 9.3232 0.9580 41 1 5.0353 9.6708 -0.3019 42 1 3.6821 10.9373 1.3453 43 1 4.8905 10.5898 2.6052 44 1 6.6172 11.7728 1.2765 45 1 5.4094 12.1207 0.0162 46 1 7.1056 15.3476 0.5398 47 1 5.7405 5.2243 -0.9835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597095917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:54 Heat of formation + Delta-G solvation = -33.681753 kcal Electronic energy + Delta-G solvation = -28426.329851 eV Core-core repulsion = 24225.678177 eV Total energy + Delta-G solvation = -4200.651674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93501 -40.86751 -39.64430 -37.25291 -36.31632 -35.43680 -34.38941 -33.27012 -31.18321 -30.77964 -28.94167 -28.33132 -27.93946 -26.47364 -24.59786 -23.28738 -22.51430 -21.47741 -20.89569 -20.61497 -19.71558 -18.18128 -17.93797 -17.76278 -17.01633 -16.89575 -16.30567 -15.80507 -15.60141 -15.06721 -14.77518 -14.65236 -14.43455 -14.29291 -14.20219 -13.86535 -13.79477 -13.24255 -13.13970 -12.89400 -12.83042 -12.73588 -12.45426 -12.26992 -12.05501 -11.79976 -11.79615 -11.42587 -11.12126 -10.92129 -10.84079 -10.70977 -10.69344 -10.58043 -10.02656 -9.84827 -9.53964 -9.43255 -9.11288 -8.81912 -8.35676 -7.72381 -6.00295 -4.03384 1.37933 1.46569 1.80964 2.29149 2.67337 2.84656 3.31849 3.38265 3.41007 3.51403 3.84963 3.98055 4.08800 4.33422 4.46163 4.52502 4.58526 4.61583 4.85817 4.93224 4.94724 5.05533 5.11062 5.14390 5.35459 5.40161 5.44808 5.47957 5.63187 5.69761 5.74310 5.82505 6.14141 6.20109 6.49537 6.63433 6.66303 6.81120 6.87156 7.01308 7.03377 7.05898 7.55914 7.65470 7.78355 7.98585 8.08844 8.39413 8.68920 9.03286 9.60710 11.10907 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030375 B = 0.001597 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.588953 B =17530.989239 C =18096.633739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.456 3.544 4 O -0.485 6.485 5 C 0.212 3.788 6 C -0.143 4.143 7 C -0.157 4.157 8 N -0.373 5.373 9 C 0.033 3.967 10 C 0.030 3.970 11 N -0.663 5.663 12 C 0.704 3.296 13 O -0.582 6.582 14 N -0.737 5.737 15 C 0.135 3.865 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.063 3.937 27 N -0.280 5.280 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.170 0.830 38 H 0.405 0.595 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -35.284 1.304 37.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.265 6.265 3 C 0.295 3.705 4 O -0.370 6.370 5 C 0.126 3.874 6 C -0.200 4.200 7 C -0.215 4.215 8 N -0.160 5.160 9 C -0.113 4.113 10 C -0.075 4.075 11 N -0.311 5.311 12 C 0.404 3.596 13 O -0.459 6.459 14 N -0.390 5.390 15 C 0.012 3.988 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.125 4.125 27 N -0.100 5.100 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.187 0.813 38 H 0.239 0.761 39 H 0.229 0.771 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.181 -35.957 -0.265 37.372 hybrid contribution -1.710 1.915 1.751 3.108 sum -11.891 -34.042 1.485 36.090 Atomic orbital electron populations 1.23378 0.75357 1.04188 1.02977 1.86468 1.24014 1.32183 1.83869 1.23654 0.91571 0.82152 0.73106 1.90754 1.66494 1.36073 1.43724 1.19884 0.86900 0.79314 1.01341 1.21956 1.03873 1.00258 0.93946 1.22298 1.03464 1.01283 0.94489 1.47928 1.30130 1.05914 1.32000 1.21628 1.01438 0.87503 1.00706 1.17417 1.02661 0.85031 1.02386 1.41892 1.40611 1.05230 1.43404 1.15862 0.81574 0.80252 0.81863 1.90789 1.36288 1.83931 1.34907 1.45347 1.42311 1.07330 1.44058 1.21559 0.94785 0.83038 0.99423 1.21899 1.00849 0.94277 0.98863 1.19032 0.95036 0.90387 0.96958 1.21204 1.19640 0.93236 1.22024 0.92660 1.25028 0.95065 0.99051 0.95305 1.69964 1.24718 1.25294 1.33224 0.86586 0.78971 0.82586 0.79783 1.20680 1.21215 1.19933 1.24661 0.99089 0.92490 0.96256 1.77385 1.07883 1.09379 1.15398 0.87516 0.91554 0.91561 0.88991 0.89489 0.90985 0.91248 0.89014 0.89564 0.81252 0.76114 0.77146 0.91706 0.91733 0.92730 0.92727 0.96188 0.96189 0.92934 0.77184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 101.05 1.07 1.21 16 2 O -0.35 -2.20 10.37 -39.23 -0.41 -2.61 16 3 C 0.46 3.85 6.49 36.01 0.23 4.08 16 4 O -0.49 -5.50 14.22 -18.75 -0.27 -5.76 16 5 C 0.21 1.66 1.18 -132.97 -0.16 1.50 16 6 C -0.14 -0.92 8.02 37.16 0.30 -0.63 16 7 C -0.16 -0.81 8.66 37.16 0.32 -0.49 16 8 N -0.37 -4.12 3.36 -49.39 -0.17 -4.29 16 9 C 0.03 0.37 9.67 -16.67 -0.16 0.21 16 10 C 0.03 0.39 6.90 -83.86 -0.58 -0.18 16 11 N -0.66 -8.04 5.48 -14.39 -0.08 -8.12 16 12 C 0.70 10.83 8.54 -86.92 -0.74 10.08 16 13 O -0.58 -10.93 13.50 5.27 0.07 -10.86 16 14 N -0.74 -10.52 5.56 -65.23 -0.36 -10.88 16 15 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 16 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 22 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.06 0.92 10.84 -17.23 -0.19 0.74 16 27 N -0.28 -3.73 11.65 30.70 0.36 -3.37 16 28 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 8.13 -51.93 -0.42 -0.12 16 31 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 32 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.28 8.11 -51.93 -0.42 -0.14 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.17 1.54 7.49 -52.49 -0.39 1.14 16 38 H 0.40 3.49 8.84 -40.82 -0.36 3.13 16 39 H 0.40 4.42 8.49 -40.82 -0.35 4.07 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.21 3.34 5.91 -52.48 -0.31 3.03 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -35.73 398.36 -7.04 -42.77 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.28 Total: 3.24 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.62 Total: 3.47 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.49 Total: -52.75 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.60 Total: -19.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.73 -7.04 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597095917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds