Wall clock time and date at job start Tue Mar 31 2020 21:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34221 * 117.00387 * 2 1 4 4 O 1.20829 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00243 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.46821 * 59.99968 * 5 3 2 7 7 C 1.52999 * 109.47024 * 299.99880 * 5 3 2 8 8 N 1.46500 * 109.46892 * 179.97438 * 5 3 2 9 9 C 1.35841 * 126.06202 * 45.00754 * 8 5 3 10 10 C 1.35733 * 107.56480 * 180.02562 * 9 8 5 11 11 N 1.40844 * 126.07279 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99889 * 179.97438 * 11 10 9 13 13 O 1.21603 * 119.99916 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47008 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00362 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99928 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47172 * 90.00092 * 22 20 18 24 24 H 1.48503 * 109.46928 * 209.99961 * 22 20 18 25 25 H 1.48499 * 109.46876 * 329.99803 * 22 20 18 26 26 C 1.40229 * 107.84614 * 0.23977 * 10 9 8 27 27 N 1.30839 * 108.34702 * 359.59086 * 26 10 9 28 28 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46978 * 300.00312 * 1 2 3 30 30 H 1.09003 * 109.47121 * 59.99963 * 1 2 3 31 31 H 1.09002 * 109.46800 * 179.97438 * 6 5 3 32 32 H 1.08994 * 109.47363 * 299.99929 * 6 5 3 33 33 H 1.08999 * 109.47291 * 60.00502 * 6 5 3 34 34 H 1.08999 * 109.47023 * 299.99771 * 7 5 3 35 35 H 1.09004 * 109.47030 * 60.00192 * 7 5 3 36 36 H 1.08999 * 109.47079 * 179.97438 * 7 5 3 37 37 H 1.08000 * 126.21886 * 0.02831 * 9 8 5 38 38 H 0.97000 * 120.00561 * 0.02562 * 11 10 9 39 39 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 40 40 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 41 41 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 42 42 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 43 43 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 44 44 H 1.08990 * 109.47021 * 299.99845 * 17 16 15 45 45 H 1.09002 * 109.46620 * 60.00037 * 17 16 15 46 46 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 47 47 H 1.08005 * 125.82269 * 179.73459 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1139 0.5808 -1.2484 7 6 4.1129 0.5814 1.2502 8 7 3.9817 2.6796 -0.0002 9 6 3.4636 3.6671 0.7756 10 6 4.1202 4.8150 0.4702 11 7 3.8913 6.0798 1.0462 12 6 4.6190 7.1426 0.6494 13 8 5.4728 7.0097 -0.2061 14 7 4.4003 8.3528 1.2010 15 6 5.1871 9.5092 0.7653 16 6 4.7388 10.7513 1.5380 17 6 5.5609 11.9590 1.0835 18 6 5.1188 13.1826 1.8441 19 1 4.3307 13.1064 2.5785 20 6 5.7213 14.3991 1.6031 21 7 6.6814 14.4918 0.7091 22 14 5.1738 15.9157 2.5465 23 1 5.9785 16.0436 3.7880 24 1 5.3709 17.1215 1.7024 25 1 3.7370 15.7875 2.8988 26 6 5.0628 4.5192 -0.5251 27 7 4.9832 3.2428 -0.8013 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 5.2024 0.6382 -1.2482 32 1 3.8048 -0.4644 -1.2483 33 1 3.7246 1.0748 -2.1386 34 1 3.7228 1.0758 2.1399 35 1 3.8038 -0.4639 1.2503 36 1 5.2014 0.6380 1.2504 37 1 2.6729 3.5584 1.5032 38 1 3.2105 6.1858 1.7289 39 1 3.7189 8.4588 1.8832 40 1 6.2437 9.3232 0.9580 41 1 5.0353 9.6708 -0.3019 42 1 3.6821 10.9373 1.3453 43 1 4.8905 10.5898 2.6052 44 1 6.6172 11.7728 1.2765 45 1 5.4094 12.1207 0.0162 46 1 7.1056 15.3476 0.5398 47 1 5.7405 5.2243 -0.9835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597095917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:53 Heat of formation + Delta-G solvation = -58.645377 kcal Electronic energy + Delta-G solvation = -28427.412355 eV Core-core repulsion = 24225.678177 eV Total energy + Delta-G solvation = -4201.734178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77278 -41.65710 -40.77896 -37.87471 -37.23505 -36.72780 -35.50978 -35.14381 -32.95097 -31.67365 -29.95374 -28.77046 -28.55443 -28.12112 -25.23145 -25.04542 -23.35601 -22.69679 -22.29923 -21.71602 -20.77134 -19.12605 -18.77778 -18.55804 -18.49162 -17.65866 -17.55802 -16.92826 -16.72455 -16.46208 -16.00018 -15.70035 -15.64933 -15.46411 -15.06703 -14.88484 -14.64383 -14.24452 -13.93964 -13.76608 -13.72113 -13.61803 -13.53018 -13.32153 -13.19798 -12.89861 -12.74947 -12.58289 -12.52182 -12.35021 -12.02704 -11.90871 -11.85702 -11.63391 -11.57947 -11.50872 -11.25153 -11.11241 -10.53255 -10.47749 -10.13877 -8.71520 -8.17459 -6.28803 0.57695 0.83241 0.98522 1.42705 1.44225 1.49767 1.55195 1.56634 1.84770 2.35184 2.43414 3.16293 3.24016 3.30732 3.44413 3.55931 3.76696 4.02732 4.18380 4.25416 4.27309 4.30143 4.44753 4.45610 4.55675 4.59392 4.60251 4.64189 4.69016 4.71777 4.97414 4.99543 5.03949 5.09325 5.13323 5.17831 5.20242 5.47860 5.56429 5.73331 5.74434 5.86858 5.89933 5.96370 6.24859 6.42406 6.56065 6.88624 7.05678 7.40614 7.52400 8.94521 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030375 B = 0.001597 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.588953 B =17530.989239 C =18096.633739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.461 3.539 4 O -0.519 6.519 5 C 0.200 3.800 6 C -0.140 4.140 7 C -0.152 4.152 8 N -0.366 5.366 9 C 0.052 3.948 10 C 0.005 3.995 11 N -0.644 5.644 12 C 0.701 3.299 13 O -0.620 6.620 14 N -0.723 5.723 15 C 0.150 3.850 16 C -0.101 4.101 17 C 0.022 3.978 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.004 4.004 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.261 1.261 26 C 0.039 3.961 27 N -0.291 5.291 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.196 0.804 38 H 0.423 0.577 39 H 0.414 0.586 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.069 0.931 44 H -0.007 1.007 45 H -0.008 1.008 46 H 0.263 0.737 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -37.298 3.396 39.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.257 6.257 3 C 0.303 3.697 4 O -0.407 6.407 5 C 0.115 3.885 6 C -0.197 4.197 7 C -0.210 4.210 8 N -0.153 5.153 9 C -0.095 4.095 10 C -0.099 4.099 11 N -0.294 5.294 12 C 0.401 3.599 13 O -0.501 6.501 14 N -0.379 5.379 15 C 0.026 3.974 16 C -0.139 4.139 17 C -0.015 4.015 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.185 1.185 26 C -0.148 4.148 27 N -0.113 5.113 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.212 0.788 38 H 0.261 0.739 39 H 0.250 0.750 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.071 0.929 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.506 -38.038 1.866 40.084 hybrid contribution -1.062 2.346 1.057 2.784 sum -13.568 -35.692 2.923 38.295 Atomic orbital electron populations 1.23669 0.73919 1.06273 1.02695 1.86464 1.25308 1.30721 1.83166 1.23683 0.91594 0.82293 0.72162 1.90742 1.67180 1.37223 1.45579 1.20363 0.87030 0.77747 1.03373 1.21993 1.03587 1.01659 0.92502 1.22330 1.03283 1.02492 0.92873 1.48320 1.29000 1.07234 1.30742 1.21986 1.00715 0.86696 1.00112 1.17552 1.03450 0.85818 1.03116 1.41572 1.40304 1.04160 1.43332 1.15972 0.81508 0.80882 0.81551 1.90784 1.38061 1.84575 1.36639 1.44947 1.42364 1.06167 1.44406 1.21116 0.94446 0.83573 0.98275 1.21594 1.00329 0.92350 0.99611 1.18953 0.94567 0.92720 0.95305 1.21692 1.19771 0.94194 1.22232 0.91499 1.26020 0.95062 1.02765 0.96276 1.70114 1.26137 1.26211 1.35007 0.85418 0.79150 0.78017 0.78260 1.19829 1.21124 1.18471 1.24424 0.99987 0.92900 0.97522 1.77320 1.08936 1.08990 1.16051 0.84258 0.91448 0.92309 0.89252 0.86436 0.92825 0.90955 0.86275 0.89669 0.78763 0.73882 0.74956 0.93102 0.93308 0.91371 0.91212 0.98810 0.98909 0.92869 0.79302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.35 16 2 O -0.34 -3.37 10.37 -51.33 -0.53 -3.91 16 3 C 0.46 6.89 6.49 71.24 0.46 7.36 16 4 O -0.52 -11.02 14.22 21.96 0.31 -10.71 16 5 C 0.20 2.77 1.18 2.86 0.00 2.77 16 6 C -0.14 -1.60 8.02 71.98 0.58 -1.02 16 7 C -0.15 -1.16 8.66 71.98 0.62 -0.53 16 8 N -0.37 -7.78 3.36 -310.18 -1.04 -8.83 16 9 C 0.05 1.11 9.67 83.49 0.81 1.91 16 10 C 0.01 0.14 6.90 37.59 0.26 0.40 16 11 N -0.64 -15.12 5.48 -317.70 -1.74 -16.86 16 12 C 0.70 21.59 8.54 179.05 1.53 23.12 16 13 O -0.62 -24.30 13.50 -4.04 -0.05 -24.35 16 14 N -0.72 -20.12 5.56 -478.53 -2.66 -22.78 16 15 C 0.15 5.34 5.67 86.38 0.49 5.83 16 16 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 17 C 0.02 1.16 4.97 29.85 0.15 1.31 16 18 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 22 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.04 1.18 10.84 85.32 0.92 2.11 16 27 N -0.29 -7.91 11.65 -56.78 -0.66 -8.57 16 28 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.07 0.40 8.13 -2.39 -0.02 0.38 16 30 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 31 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 32 H 0.12 0.59 8.11 -2.39 -0.02 0.58 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.12 0.28 8.11 -2.38 -0.02 0.26 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.20 3.05 7.49 -2.91 -0.02 3.03 16 38 H 0.42 6.47 8.84 -92.71 -0.82 5.65 16 39 H 0.41 8.39 8.49 -92.71 -0.79 7.60 16 40 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.19 6.54 5.91 -2.91 -0.02 6.52 16 Total: -1.00 -79.89 398.36 3.20 -76.69 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.61 Total: 19.23 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.88 Total: 11.16 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.82 Total: -114.11 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.27 Total: -38.97 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -79.89 3.20 -76.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597095917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.047 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds