Wall clock time and date at job start Tue Mar 31 2020 21:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46989 * 2 1 4 4 H 1.08994 * 109.47219 * 184.57869 * 3 2 1 5 5 C 1.50702 * 109.47249 * 304.58695 * 3 2 1 6 6 H 1.07995 * 120.00342 * 119.99633 * 5 3 2 7 7 C 1.37880 * 119.99317 * 299.99741 * 5 3 2 8 8 N 1.31506 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99524 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47019 * 60.00225 * 9 7 5 11 11 H 1.48497 * 109.46686 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46882 * 300.00079 * 9 7 5 13 13 N 1.46900 * 109.46895 * 64.58320 * 3 2 1 14 14 C 1.46904 * 111.00136 * 86.40535 * 13 3 2 15 15 H 1.08994 * 109.47003 * 323.11569 * 14 13 3 16 16 C 1.52999 * 109.47023 * 83.11509 * 14 13 3 17 17 C 1.50700 * 109.47354 * 203.11745 * 14 13 3 18 18 O 1.21466 * 119.99581 * 344.99486 * 17 14 13 19 19 C 1.41122 * 120.00397 * 165.00164 * 17 14 13 20 20 C 1.40561 * 121.07051 * 175.16354 * 19 17 14 21 21 N 1.36061 * 120.53818 * 359.97438 * 20 19 17 22 22 N 1.36579 * 118.92291 * 179.72708 * 20 19 17 23 23 C 1.46500 * 119.34270 * 180.27116 * 22 20 19 24 24 C 1.34212 * 121.31505 * 0.58718 * 22 20 19 25 25 O 1.21550 * 118.78825 * 179.70397 * 24 22 20 26 26 N 1.34288 * 122.42504 * 359.68509 * 24 22 20 27 27 C 1.46505 * 119.57340 * 180.02562 * 26 24 22 28 28 C 1.34902 * 120.85631 * 359.97438 * 26 24 22 29 29 O 1.21717 * 120.69476 * 179.97438 * 28 26 24 30 30 H 1.09002 * 109.47495 * 303.12995 * 1 2 3 31 31 H 1.09000 * 109.47251 * 63.13272 * 1 2 3 32 32 H 1.09002 * 109.47018 * 183.12997 * 1 2 3 33 33 H 1.08995 * 109.47597 * 239.99814 * 2 1 3 34 34 H 1.09002 * 109.47108 * 119.99572 * 2 1 3 35 35 H 0.96999 * 120.00316 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00742 * 322.45088 * 13 3 2 37 37 H 1.09001 * 109.47318 * 299.99921 * 16 14 13 38 38 H 1.09006 * 109.47300 * 60.00510 * 16 14 13 39 39 H 1.09000 * 109.47041 * 180.02562 * 16 14 13 40 40 H 0.96993 * 120.00232 * 27.03968 * 21 20 19 41 41 H 0.97004 * 119.99803 * 207.03054 * 21 20 19 42 42 H 1.08998 * 109.47196 * 180.31000 * 23 22 20 43 43 H 1.09003 * 109.47082 * 300.31003 * 23 22 20 44 44 H 1.08998 * 109.47380 * 60.30532 * 23 22 20 45 45 H 1.09005 * 109.46704 * 269.97539 * 27 26 24 46 46 H 1.08995 * 109.46906 * 29.97309 * 27 26 24 47 47 H 1.09001 * 109.47007 * 149.97930 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 -0.0820 5 6 1.4470 2.1850 -1.1697 6 1 0.8362 3.0594 -1.0008 7 6 1.6844 1.7478 -2.4556 8 7 2.4277 0.6826 -2.6613 9 14 0.9488 2.6676 -3.9056 10 1 1.4432 4.0679 -3.9057 11 1 1.3510 2.0011 -5.1701 12 1 -0.5319 2.6655 -3.7934 13 7 1.6427 2.1023 1.2509 14 6 2.6273 1.8543 2.3126 15 1 3.0109 0.8382 2.2222 16 6 3.7820 2.8492 2.1797 17 6 1.9694 2.0250 3.6577 18 8 0.8924 2.5803 3.7408 19 6 2.6048 1.5398 4.8207 20 6 2.0617 1.7748 6.0957 21 7 0.9061 2.4792 6.2358 22 7 2.7101 1.2801 7.1912 23 6 2.1491 1.5144 8.5241 24 6 3.8544 0.5891 7.0715 25 8 4.3958 0.1744 8.0777 26 7 4.4231 0.3384 5.8811 27 6 5.6733 -0.4232 5.8230 28 6 3.8576 0.7780 4.7379 29 8 4.3759 0.5496 3.6605 30 1 -0.3634 0.5617 0.8606 31 1 -0.3634 0.4644 -0.9167 32 1 -0.3633 -1.0262 0.0561 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.5950 0.3753 -3.5660 36 1 0.7206 1.8093 1.5374 37 1 4.2579 2.7257 1.2069 38 1 3.3984 3.8655 2.2702 39 1 4.5128 2.6649 2.9672 40 1 0.2543 2.4896 5.5175 41 1 0.7340 2.9708 7.0541 42 1 2.7938 1.0579 9.2751 43 1 2.0817 2.5870 8.7065 44 1 1.1542 1.0729 8.5823 45 1 6.5191 0.2620 5.8801 46 1 5.7132 -1.1203 6.6599 47 1 5.7176 -0.9778 4.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000653757462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:52 Heat of formation + Delta-G solvation = -49.107270 kcal Electronic energy + Delta-G solvation = -31238.933426 eV Core-core repulsion = 27037.612851 eV Total energy + Delta-G solvation = -4201.320575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66510 -39.84305 -39.26688 -37.95780 -36.21132 -35.43503 -34.36063 -32.94515 -31.71967 -30.90448 -28.61812 -27.84737 -27.24158 -25.94782 -24.90514 -23.39703 -23.31358 -22.54097 -20.18376 -19.79280 -18.64175 -18.14240 -18.02050 -17.53872 -16.62819 -16.26208 -16.09170 -15.73391 -15.32858 -15.14490 -15.05518 -14.63152 -14.48176 -13.91090 -13.81704 -13.50112 -13.14354 -13.13613 -12.95185 -12.61358 -12.55016 -12.46701 -12.22225 -11.96516 -11.57242 -11.36794 -11.20361 -10.85155 -10.79525 -10.62432 -10.40161 -10.39430 -10.11530 -9.88404 -9.83234 -9.61615 -9.42485 -9.07504 -8.76632 -8.44443 -8.18761 -6.95251 -5.82504 -3.83123 0.59981 1.35293 1.63386 2.51638 2.58493 3.03335 3.43910 3.46346 3.47406 3.51375 3.97886 4.39126 4.51288 4.56053 4.62746 4.80414 4.98856 5.14430 5.17879 5.21772 5.30112 5.48546 5.51809 5.52630 5.69377 5.99934 6.15687 6.22524 6.45647 6.47341 6.51900 6.54724 6.71131 6.74908 6.78148 6.96921 7.06745 7.10132 7.22582 7.44622 7.47801 7.63955 7.80332 7.87336 8.00718 8.09200 8.47887 8.78652 8.84257 9.23113 9.79762 11.24534 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.003117 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.970095 B = 8982.142154 C = 9629.297831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.483 4.483 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.673 5.673 14 C 0.051 3.949 15 H 0.081 0.919 16 C -0.113 4.113 17 C 0.435 3.565 18 O -0.494 6.494 19 C -0.426 4.426 20 C 0.538 3.462 21 N -0.807 5.807 22 N -0.545 5.545 23 C 0.060 3.940 24 C 0.712 3.288 25 O -0.539 6.539 26 N -0.559 5.559 27 C 0.080 3.920 28 C 0.568 3.432 29 O -0.481 6.481 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.093 0.907 34 H 0.009 0.991 35 H 0.258 0.742 36 H 0.330 0.670 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.440 0.560 41 H 0.405 0.595 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 0.017 25.578 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.522 4.522 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.306 5.306 14 C -0.060 4.060 15 H 0.099 0.901 16 C -0.171 4.171 17 C 0.320 3.680 18 O -0.375 6.375 19 C -0.443 4.443 20 C 0.314 3.686 21 N -0.359 5.359 22 N -0.270 5.270 23 C -0.081 4.081 24 C 0.414 3.586 25 O -0.412 6.412 26 N -0.303 5.303 27 C -0.061 4.061 28 C 0.363 3.637 29 O -0.353 6.353 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.286 0.714 41 H 0.236 0.764 42 H 0.133 0.867 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.074 0.376 25.268 25.294 hybrid contribution -0.813 -0.334 -0.389 0.961 sum 0.261 0.042 24.879 24.881 Atomic orbital electron populations 1.21562 0.97887 0.97680 1.01324 1.22111 0.94780 1.01438 1.00197 1.19228 0.96036 0.88272 0.85595 0.94639 1.21058 1.30221 1.11326 0.89613 0.92116 1.24905 0.95701 0.95220 0.98624 1.69879 1.39082 1.23953 1.20824 0.86657 0.79456 0.79983 0.81825 1.20433 1.21665 1.20500 1.60812 1.03492 1.63329 1.02983 1.21782 0.94727 1.00656 0.88830 0.90131 1.21486 0.95916 0.97742 1.01941 1.20214 0.84335 0.73699 0.89734 1.90232 1.21666 1.37658 1.87950 1.20460 1.04496 1.26850 0.92455 1.18345 0.82263 0.82192 0.85820 1.42852 1.18380 1.49823 1.24828 1.44737 1.23540 1.50186 1.08585 1.22221 1.00988 1.03339 0.81532 1.15379 0.79725 0.78938 0.84544 1.90991 1.61572 1.53975 1.34634 1.46230 1.25974 1.52079 1.06024 1.21944 0.82424 0.96531 1.05154 1.17961 0.84229 0.78494 0.83039 1.90921 1.63294 1.55303 1.25781 0.95084 0.91684 0.96094 0.88916 0.97187 0.93237 0.84964 0.91549 0.93190 0.93381 0.71394 0.76406 0.86677 0.90045 0.89632 0.90772 0.89198 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.39 37.16 0.35 -2.54 16 2 C -0.15 -3.63 5.50 -26.73 -0.15 -3.78 16 3 C 0.22 5.66 2.13 -68.86 -0.15 5.51 16 4 H 0.04 1.03 6.98 -51.93 -0.36 0.66 16 5 C -0.48 -13.64 7.42 -34.44 -0.26 -13.90 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -26.15 11.37 55.43 0.63 -25.52 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.67 -15.56 5.82 -102.17 -0.60 -16.15 16 14 C 0.05 1.03 1.95 -68.86 -0.13 0.90 16 15 H 0.08 1.77 5.19 -51.93 -0.27 1.50 16 16 C -0.11 -2.19 8.89 37.16 0.33 -1.86 16 17 C 0.43 7.43 6.09 -33.21 -0.20 7.22 16 18 O -0.49 -8.50 13.39 5.40 0.07 -8.43 16 19 C -0.43 -5.93 5.87 -104.44 -0.61 -6.54 16 20 C 0.54 5.24 7.53 -153.55 -1.16 4.08 16 21 N -0.81 -5.59 8.15 31.61 0.26 -5.33 16 22 N -0.55 -4.50 2.99 -127.86 -0.38 -4.88 16 23 C 0.06 0.23 9.56 59.85 0.57 0.81 16 24 C 0.71 7.70 8.09 -87.86 -0.71 6.99 16 25 O -0.54 -6.38 14.86 5.32 0.08 -6.30 16 26 N -0.56 -6.63 2.95 -129.81 -0.38 -7.01 16 27 C 0.08 0.77 10.09 59.85 0.60 1.38 16 28 C 0.57 8.22 7.21 -12.72 -0.09 8.13 16 29 O -0.48 -8.32 11.65 5.17 0.06 -8.26 16 30 H 0.03 0.65 6.30 -51.93 -0.33 0.33 16 31 H 0.06 1.60 7.20 -51.93 -0.37 1.22 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 2.56 6.21 -51.93 -0.32 2.24 16 34 H 0.01 0.23 7.46 -51.93 -0.39 -0.16 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.33 7.56 5.52 -39.29 -0.22 7.34 16 37 H 0.07 1.40 7.31 -51.93 -0.38 1.03 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 40 H 0.44 3.91 6.05 -40.82 -0.25 3.67 16 41 H 0.40 1.23 7.65 -40.82 -0.31 0.91 16 42 H 0.11 0.53 6.76 -51.93 -0.35 0.18 16 43 H 0.08 0.12 7.73 -51.93 -0.40 -0.29 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.76 7.33 -51.93 -0.38 0.38 16 47 H 0.10 0.96 7.42 -51.93 -0.39 0.57 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -34.54 367.24 -7.73 -42.27 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.28 Total: 9.17 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.70 Total: 7.87 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.47 Total: -58.89 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.21 Total: -22.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.54 -7.73 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000653757462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.841 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds