Wall clock time and date at job start Tue Mar 31 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46989 * 2 1 4 4 H 1.08994 * 109.47219 * 184.57869 * 3 2 1 5 5 C 1.50702 * 109.47249 * 304.58695 * 3 2 1 6 6 H 1.07995 * 120.00342 * 119.99633 * 5 3 2 7 7 C 1.37880 * 119.99317 * 299.99741 * 5 3 2 8 8 N 1.31506 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99524 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47019 * 60.00225 * 9 7 5 11 11 H 1.48497 * 109.46686 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46882 * 300.00079 * 9 7 5 13 13 N 1.46900 * 109.46895 * 64.58320 * 3 2 1 14 14 C 1.46904 * 111.00136 * 86.40535 * 13 3 2 15 15 H 1.08994 * 109.47003 * 323.11569 * 14 13 3 16 16 C 1.52999 * 109.47023 * 83.11509 * 14 13 3 17 17 C 1.50700 * 109.47354 * 203.11745 * 14 13 3 18 18 O 1.21466 * 119.99581 * 344.99486 * 17 14 13 19 19 C 1.41122 * 120.00397 * 165.00164 * 17 14 13 20 20 C 1.40561 * 121.07051 * 175.16354 * 19 17 14 21 21 N 1.36061 * 120.53818 * 359.97438 * 20 19 17 22 22 N 1.36579 * 118.92291 * 179.72708 * 20 19 17 23 23 C 1.46500 * 119.34270 * 180.27116 * 22 20 19 24 24 C 1.34212 * 121.31505 * 0.58718 * 22 20 19 25 25 O 1.21550 * 118.78825 * 179.70397 * 24 22 20 26 26 N 1.34288 * 122.42504 * 359.68509 * 24 22 20 27 27 C 1.46505 * 119.57340 * 180.02562 * 26 24 22 28 28 C 1.34902 * 120.85631 * 359.97438 * 26 24 22 29 29 O 1.21717 * 120.69476 * 179.97438 * 28 26 24 30 30 H 1.09002 * 109.47495 * 303.12995 * 1 2 3 31 31 H 1.09000 * 109.47251 * 63.13272 * 1 2 3 32 32 H 1.09002 * 109.47018 * 183.12997 * 1 2 3 33 33 H 1.08995 * 109.47597 * 239.99814 * 2 1 3 34 34 H 1.09002 * 109.47108 * 119.99572 * 2 1 3 35 35 H 0.96999 * 120.00316 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00742 * 322.45088 * 13 3 2 37 37 H 1.09001 * 109.47318 * 299.99921 * 16 14 13 38 38 H 1.09006 * 109.47300 * 60.00510 * 16 14 13 39 39 H 1.09000 * 109.47041 * 180.02562 * 16 14 13 40 40 H 0.96993 * 120.00232 * 27.03968 * 21 20 19 41 41 H 0.97004 * 119.99803 * 207.03054 * 21 20 19 42 42 H 1.08998 * 109.47196 * 180.31000 * 23 22 20 43 43 H 1.09003 * 109.47082 * 300.31003 * 23 22 20 44 44 H 1.08998 * 109.47380 * 60.30532 * 23 22 20 45 45 H 1.09005 * 109.46704 * 269.97539 * 27 26 24 46 46 H 1.08995 * 109.46906 * 29.97309 * 27 26 24 47 47 H 1.09001 * 109.47007 * 149.97930 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 -0.0820 5 6 1.4470 2.1850 -1.1697 6 1 0.8362 3.0594 -1.0008 7 6 1.6844 1.7478 -2.4556 8 7 2.4277 0.6826 -2.6613 9 14 0.9488 2.6676 -3.9056 10 1 1.4432 4.0679 -3.9057 11 1 1.3510 2.0011 -5.1701 12 1 -0.5319 2.6655 -3.7934 13 7 1.6427 2.1023 1.2509 14 6 2.6273 1.8543 2.3126 15 1 3.0109 0.8382 2.2222 16 6 3.7820 2.8492 2.1797 17 6 1.9694 2.0250 3.6577 18 8 0.8924 2.5803 3.7408 19 6 2.6048 1.5398 4.8207 20 6 2.0617 1.7748 6.0957 21 7 0.9061 2.4792 6.2358 22 7 2.7101 1.2801 7.1912 23 6 2.1491 1.5144 8.5241 24 6 3.8544 0.5891 7.0715 25 8 4.3958 0.1744 8.0777 26 7 4.4231 0.3384 5.8811 27 6 5.6733 -0.4232 5.8230 28 6 3.8576 0.7780 4.7379 29 8 4.3759 0.5496 3.6605 30 1 -0.3634 0.5617 0.8606 31 1 -0.3634 0.4644 -0.9167 32 1 -0.3633 -1.0262 0.0561 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.5950 0.3753 -3.5660 36 1 0.7206 1.8093 1.5374 37 1 4.2579 2.7257 1.2069 38 1 3.3984 3.8655 2.2702 39 1 4.5128 2.6649 2.9672 40 1 0.2543 2.4896 5.5175 41 1 0.7340 2.9708 7.0541 42 1 2.7938 1.0579 9.2751 43 1 2.0817 2.5870 8.7065 44 1 1.1542 1.0729 8.5823 45 1 6.5191 0.2620 5.8801 46 1 5.7132 -1.1203 6.6599 47 1 5.7176 -0.9778 4.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000653757462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:51 Heat of formation + Delta-G solvation = -73.971751 kcal Electronic energy + Delta-G solvation = -31240.011630 eV Core-core repulsion = 27037.612851 eV Total energy + Delta-G solvation = -4202.398779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.54441 -41.02353 -40.22957 -39.05135 -37.95737 -36.45855 -35.19008 -34.71466 -33.19989 -32.38082 -30.13147 -28.86365 -27.99190 -27.93188 -26.04461 -25.26307 -24.19154 -23.93612 -21.45605 -21.04127 -20.32527 -19.04822 -18.92068 -18.44849 -18.09689 -17.37442 -17.21180 -16.90172 -16.75097 -16.48619 -16.15049 -15.99874 -15.86141 -15.30287 -15.01411 -14.76421 -14.66422 -14.29407 -14.12110 -13.97013 -13.81312 -13.49443 -13.33215 -13.23072 -13.14713 -12.95309 -12.75116 -12.57671 -12.48185 -12.35129 -12.26615 -11.87102 -11.71371 -11.43360 -11.22418 -11.03601 -10.94564 -10.74698 -10.41219 -10.37614 -9.43147 -8.83490 -8.00183 -6.08924 -0.29931 0.59165 0.67056 1.41647 1.45310 1.47442 1.54834 1.64288 2.34232 2.40778 2.49150 3.04131 3.27631 3.58777 3.71913 3.81744 4.04268 4.30364 4.33804 4.38751 4.44647 4.49915 4.52962 4.54749 4.55905 4.64001 4.68823 4.73071 4.75641 4.80886 4.94188 5.01166 5.07567 5.16979 5.33667 5.42821 5.45554 5.68464 5.75769 5.76438 5.88608 5.89708 6.29781 6.36843 6.43342 6.68179 6.79199 6.80001 6.96069 7.05131 7.58453 9.05383 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.003117 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.970095 B = 8982.142154 C = 9629.297831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.138 4.138 3 C 0.225 3.775 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.674 5.674 14 C 0.047 3.953 15 H 0.061 0.939 16 C -0.101 4.101 17 C 0.439 3.561 18 O -0.506 6.506 19 C -0.461 4.461 20 C 0.572 3.428 21 N -0.778 5.778 22 N -0.533 5.533 23 C 0.048 3.952 24 C 0.711 3.289 25 O -0.545 6.545 26 N -0.561 5.561 27 C 0.077 3.923 28 C 0.567 3.433 29 O -0.523 6.523 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.015 0.985 35 H 0.258 0.742 36 H 0.332 0.668 37 H 0.036 0.964 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.438 0.562 41 H 0.428 0.572 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 0.831 28.458 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.308 5.308 14 C -0.064 4.064 15 H 0.078 0.922 16 C -0.159 4.159 17 C 0.326 3.674 18 O -0.389 6.389 19 C -0.477 4.477 20 C 0.341 3.659 21 N -0.329 5.329 22 N -0.257 5.257 23 C -0.091 4.091 24 C 0.413 3.587 25 O -0.419 6.419 26 N -0.305 5.305 27 C -0.063 4.063 28 C 0.364 3.636 29 O -0.399 6.399 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.152 0.848 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.283 0.717 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.676 1.214 28.245 28.279 hybrid contribution -0.262 -0.585 -1.063 1.241 sum -0.938 0.630 27.182 27.205 Atomic orbital electron populations 1.21425 0.95792 0.99278 1.00818 1.21949 0.96544 1.00288 0.98983 1.18944 0.93495 0.89165 0.86765 0.98596 1.21245 1.30384 1.11306 0.90776 0.93030 1.25631 0.95957 0.95938 1.01092 1.70023 1.39861 1.25065 1.21299 0.85669 0.79014 0.78667 0.78588 1.20162 1.21176 1.19552 1.60698 1.04213 1.62862 1.02993 1.21795 0.94416 0.99694 0.90501 0.92172 1.21348 0.96097 0.97657 1.00822 1.19711 0.84340 0.74251 0.89116 1.90224 1.21754 1.38903 1.87982 1.19918 1.05354 1.29312 0.93102 1.17907 0.82129 0.80876 0.84954 1.42834 1.16515 1.47887 1.25687 1.44865 1.22518 1.48624 1.09699 1.22708 1.01827 1.05878 0.78689 1.15464 0.80248 0.79066 0.83900 1.90997 1.61923 1.54335 1.34624 1.46231 1.26450 1.51949 1.05848 1.22064 0.82103 0.96860 1.05273 1.18085 0.84311 0.78166 0.83054 1.90899 1.64469 1.57214 1.27343 0.93682 0.93728 0.93625 0.91788 0.96599 0.93249 0.84824 0.94497 0.93030 0.91717 0.71706 0.73573 0.87073 0.86753 0.87069 0.89730 0.87887 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 9.39 71.98 0.68 -4.57 16 2 C -0.14 -7.11 5.50 30.59 0.17 -6.94 16 3 C 0.22 12.29 2.13 44.17 0.09 12.38 16 4 H 0.00 -0.24 6.98 -2.39 -0.02 -0.26 16 5 C -0.50 -28.95 7.42 25.60 0.19 -28.76 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.67 5.29 84.66 0.45 1.12 16 8 N -0.92 -55.31 11.37 21.45 0.24 -55.07 16 9 Si 0.95 45.78 29.54 68.60 2.03 47.81 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 N -0.67 -32.21 5.82 -477.16 -2.78 -34.99 16 14 C 0.05 1.97 1.95 44.17 0.09 2.05 16 15 H 0.06 2.81 5.19 -2.39 -0.01 2.80 16 16 C -0.10 -4.13 8.89 71.98 0.64 -3.49 16 17 C 0.44 14.92 6.09 26.39 0.16 15.08 16 18 O -0.51 -16.86 13.39 -3.61 -0.05 -16.91 16 19 C -0.46 -12.40 5.87 -19.75 -0.12 -12.52 16 20 C 0.57 9.44 7.53 133.09 1.00 10.44 16 21 N -0.78 -7.69 8.15 -53.92 -0.44 -8.13 16 22 N -0.53 -6.98 2.99 -677.04 -2.03 -9.00 16 23 C 0.05 0.15 9.56 127.77 1.22 1.37 16 24 C 0.71 13.81 8.09 179.38 1.45 15.26 16 25 O -0.55 -11.61 14.86 -3.87 -0.06 -11.66 16 26 N -0.56 -12.89 2.95 -801.29 -2.37 -15.25 16 27 C 0.08 1.47 10.09 127.77 1.29 2.75 16 28 C 0.57 16.53 7.21 86.48 0.62 17.15 16 29 O -0.52 -19.03 11.65 -4.40 -0.05 -19.09 16 30 H 0.04 1.89 6.30 -2.39 -0.02 1.87 16 31 H 0.04 2.19 7.20 -2.39 -0.02 2.17 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 3.67 6.21 -2.39 -0.01 3.66 16 34 H 0.02 0.76 7.46 -2.39 -0.02 0.75 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.33 15.38 5.52 -89.69 -0.50 14.89 16 37 H 0.04 1.67 7.31 -2.39 -0.02 1.65 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.06 2.38 6.37 -2.39 -0.02 2.36 16 40 H 0.44 6.30 6.05 -92.71 -0.56 5.74 16 41 H 0.43 0.36 7.65 -92.71 -0.71 -0.35 16 42 H 0.11 0.58 6.76 -2.39 -0.02 0.56 16 43 H 0.11 -0.33 7.73 -2.39 -0.02 -0.35 16 44 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.10 1.64 7.33 -2.39 -0.02 1.63 16 47 H 0.09 1.84 7.42 -2.39 -0.02 1.82 16 Total: -1.00 -78.57 367.24 1.72 -76.85 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.71 Total: 24.12 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 7.94 Total: 21.33 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -7.37 Total: -122.45 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.16 Total: -47.66 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.57 1.72 -76.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000653757462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.878 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds