Wall clock time and date at job start Tue Mar 31 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46975 * 2 1 4 4 H 1.09003 * 109.47255 * 55.00331 * 3 2 1 5 5 N 1.46501 * 109.47341 * 295.00060 * 3 2 1 6 6 C 1.34773 * 119.99932 * 85.00031 * 5 3 2 7 7 O 1.21507 * 120.00176 * 359.97438 * 6 5 3 8 8 O 1.34639 * 120.00225 * 180.02562 * 6 5 3 9 9 C 1.45193 * 117.00431 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47262 * 59.99827 * 9 8 6 11 11 C 1.52996 * 109.47503 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47230 * 300.00013 * 9 8 6 13 13 C 1.50705 * 109.47039 * 175.00209 * 3 2 1 14 14 O 1.21299 * 119.99726 * 120.00448 * 13 3 2 15 15 N 1.34777 * 119.99695 * 299.99579 * 13 3 2 16 16 C 1.40597 * 119.99674 * 179.97438 * 15 13 3 17 17 C 1.40648 * 126.08199 * 359.97438 * 16 15 13 18 18 N 1.30907 * 108.38289 * 179.77574 * 17 16 15 19 19 N 1.40067 * 108.41135 * 0.38341 * 18 17 16 20 20 C 1.37320 * 126.07294 * 179.87911 * 19 18 17 21 21 H 1.08002 * 120.00430 * 179.69232 * 20 19 18 22 22 C 1.38992 * 119.99664 * 359.41108 * 20 19 18 23 23 N 1.31294 * 120.00157 * 0.27652 * 22 20 19 24 24 Si 1.86803 * 119.99838 * 180.27798 * 22 20 19 25 25 H 1.48506 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99952 * 24 22 20 27 27 H 1.48498 * 109.47018 * 239.99998 * 24 22 20 28 28 C 1.35682 * 126.07675 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.46785 * 299.99839 * 1 2 3 30 30 H 1.09003 * 109.47112 * 59.99868 * 1 2 3 31 31 H 1.08993 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46912 * 240.00457 * 2 1 3 33 33 H 1.09003 * 109.47112 * 120.00132 * 2 1 3 34 34 H 0.97001 * 119.99852 * 265.00335 * 5 3 2 35 35 H 1.09008 * 109.46823 * 60.00160 * 10 9 8 36 36 H 1.08994 * 109.47358 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47462 * 300.00696 * 10 9 8 38 38 H 1.09000 * 109.47334 * 60.00195 * 11 9 8 39 39 H 1.09003 * 109.47578 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47439 * 300.00255 * 11 9 8 41 41 H 1.09005 * 109.46634 * 60.00006 * 12 9 8 42 42 H 1.08997 * 109.47041 * 179.97438 * 12 9 8 43 43 H 1.08997 * 109.47203 * 300.00299 * 12 9 8 44 44 H 0.96997 * 119.99849 * 0.02562 * 15 13 3 45 45 H 1.08000 * 125.80726 * 0.02562 * 17 16 15 46 46 H 0.96996 * 120.00263 * 179.97438 * 23 22 20 47 47 H 1.07994 * 126.25033 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3669 7 8 -0.3410 2.6318 -0.4326 8 8 0.0787 3.2660 -2.5175 9 6 -1.2475 3.8546 -2.5703 10 6 -1.3718 4.9296 -1.4887 11 6 -1.4708 4.4862 -3.9458 12 6 -2.2978 2.7678 -2.3322 13 6 3.5420 1.4443 0.1238 14 8 4.2217 1.9437 -0.7479 15 7 4.1298 0.8912 1.2031 16 6 5.5310 0.8924 1.3184 17 6 6.4381 1.4319 0.3887 18 7 7.6523 1.2486 0.8424 19 7 7.5694 0.5799 2.0704 20 6 8.6285 0.2044 2.8597 21 1 8.4509 -0.3051 3.7953 22 6 9.9294 0.4748 2.4517 23 7 10.1454 1.0940 1.3143 24 14 11.3704 -0.0429 3.5217 25 1 10.8627 -0.7181 4.7431 26 1 12.2392 -0.9784 2.7633 27 1 12.1549 1.1568 3.9097 28 6 6.2487 0.3725 2.3458 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2719 2.1232 -1.9978 35 1 -0.6236 5.7040 -1.6584 36 1 -2.3672 5.3719 -1.5287 37 1 -1.2129 4.4794 -0.5089 38 1 -1.3825 3.7200 -4.7161 39 1 -2.4666 4.9277 -3.9857 40 1 -0.7227 5.2603 -4.1160 41 1 -2.1389 2.3175 -1.3523 42 1 -3.2933 3.2098 -2.3714 43 1 -2.2092 2.0019 -3.1026 44 1 3.5861 0.4916 1.9000 45 1 6.1772 1.9185 -0.5395 46 1 11.0532 1.2830 1.0297 47 1 5.8481 -0.1167 3.2213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727155477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:38 Heat of formation + Delta-G solvation = -36.461833 kcal Electronic energy + Delta-G solvation = -29613.304989 eV Core-core repulsion = 25412.532762 eV Total energy + Delta-G solvation = -4200.772227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07086 -40.06144 -39.00916 -37.48084 -35.22675 -34.46991 -34.24997 -33.22877 -32.07850 -30.29425 -28.48182 -27.64273 -27.59141 -26.95421 -24.78414 -22.91438 -22.05194 -20.97807 -20.32673 -20.15952 -19.44680 -18.50861 -17.44255 -17.01600 -16.54632 -16.29116 -15.72821 -15.47792 -15.11991 -14.85093 -14.63943 -14.48268 -14.15584 -13.89772 -13.61231 -13.56866 -13.22138 -12.94345 -12.72898 -12.58360 -12.35405 -12.14829 -12.11302 -12.05206 -11.72304 -11.65965 -11.63512 -11.46783 -11.45209 -11.29568 -10.98602 -10.95936 -10.52771 -10.50373 -10.25139 -10.12093 -9.46619 -9.21608 -9.11005 -8.84067 -8.09802 -6.76026 -6.58624 -4.26121 1.98520 2.66095 2.77459 2.98244 3.03591 3.09654 3.46750 3.63242 3.83664 4.04154 4.36126 4.48943 4.53548 4.59271 4.67628 4.79120 4.90383 4.99542 5.03603 5.22120 5.22552 5.30311 5.36611 5.45034 5.47271 5.56294 5.63401 5.69170 5.74904 5.83340 5.95611 6.02622 6.08265 6.20190 6.22536 6.29058 6.40536 6.45341 6.83858 6.91318 7.03459 7.19413 7.38007 7.82331 8.06525 8.22405 8.31698 8.54628 8.74376 9.34232 9.63227 10.37366 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.002062 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.038223 B =13573.361364 C =14123.157206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.151 3.849 4 H 0.115 0.885 5 N -0.690 5.690 6 C 0.656 3.344 7 O -0.567 6.567 8 O -0.363 6.363 9 C 0.137 3.863 10 C -0.184 4.184 11 C -0.141 4.141 12 C -0.183 4.183 13 C 0.495 3.505 14 O -0.531 6.531 15 N -0.614 5.614 16 C -0.063 4.063 17 C -0.031 4.031 18 N -0.260 5.260 19 N -0.142 5.142 20 C -0.322 4.322 21 H 0.117 0.883 22 C 0.046 3.954 23 N -0.769 5.769 24 Si 0.935 3.065 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.416 0.584 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.399 0.601 45 H 0.176 0.824 46 H 0.275 0.725 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.809 1.279 -4.410 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.043 3.957 4 H 0.133 0.867 5 N -0.350 5.350 6 C 0.409 3.591 7 O -0.457 6.457 8 O -0.278 6.278 9 C 0.100 3.900 10 C -0.241 4.241 11 C -0.199 4.199 12 C -0.240 4.240 13 C 0.279 3.721 14 O -0.408 6.408 15 N -0.256 5.256 16 C -0.168 4.168 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.091 4.909 20 C -0.455 4.455 21 H 0.135 0.865 22 C -0.172 4.172 23 N -0.396 5.396 24 Si 0.759 3.241 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.233 4.233 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.233 0.767 45 H 0.193 0.807 46 H 0.085 0.915 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.314 1.938 -4.986 21.007 hybrid contribution -0.310 -0.533 0.719 0.947 sum -20.624 1.405 -4.267 21.108 Atomic orbital electron populations 1.21807 0.94121 1.00874 1.03165 1.21979 0.97587 0.94080 1.03526 1.20750 0.92340 0.95021 0.87565 0.86711 1.44342 1.14668 1.58556 1.17456 1.17868 0.82665 0.77049 0.81489 1.90891 1.51466 1.63617 1.39737 1.86323 1.36695 1.68295 1.36475 1.22052 0.78284 0.92814 0.96875 1.22519 1.02427 0.98301 1.00839 1.21862 1.02529 1.01208 0.94257 1.22527 0.98172 0.98711 1.04627 1.20158 0.89027 0.80107 0.82796 1.90612 1.64217 1.45698 1.40279 1.42363 1.05473 1.56399 1.21395 1.17241 0.81299 1.17584 1.00685 1.24105 0.89527 1.05807 1.01257 1.78266 1.18279 1.17076 0.95520 1.44568 1.02809 1.31049 1.12482 1.19931 0.83345 1.39240 1.02962 0.86517 1.25655 0.99357 0.95660 0.96491 1.70222 1.22161 1.29476 1.17699 0.85759 0.80026 0.78780 0.79557 1.18665 1.19904 1.19904 1.21264 0.85306 1.14676 1.02025 0.91778 0.92510 0.93201 0.90897 0.90134 0.74643 0.92142 0.91289 0.89224 0.91486 0.90226 0.91402 0.89169 0.91292 0.92251 0.76742 0.80745 0.91476 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.51 37.16 0.32 -1.12 16 2 C -0.13 -1.38 5.55 -26.73 -0.15 -1.53 16 3 C 0.15 1.88 2.67 -69.08 -0.18 1.69 16 4 H 0.12 1.38 7.58 -51.93 -0.39 0.98 16 5 N -0.69 -8.79 4.91 -59.86 -0.29 -9.08 16 6 C 0.66 8.38 6.62 54.05 0.36 8.74 16 7 O -0.57 -7.54 9.01 -19.28 -0.17 -7.71 16 8 O -0.36 -4.36 9.94 -40.32 -0.40 -4.76 16 9 C 0.14 1.30 1.13 -90.62 -0.10 1.19 16 10 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 11 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 12 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 13 C 0.49 8.06 7.19 -10.98 -0.08 7.98 16 14 O -0.53 -10.59 12.99 5.54 0.07 -10.51 16 15 N -0.61 -10.22 5.33 -10.00 -0.05 -10.27 16 16 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 17 C -0.03 -0.81 10.85 -17.04 -0.18 -0.99 16 18 N -0.26 -7.47 10.40 30.80 0.32 -7.15 16 19 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 20 C -0.32 -8.42 10.25 -14.81 -0.15 -8.57 16 21 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -21.32 11.81 55.50 0.66 -20.67 16 24 Si 0.93 18.74 29.55 -169.99 -5.02 13.72 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 29 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 30 H 0.06 0.64 5.64 -51.93 -0.29 0.35 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.72 7.43 -51.93 -0.39 0.34 16 34 H 0.42 5.43 7.90 -40.82 -0.32 5.11 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.40 5.03 8.18 -40.82 -0.33 4.70 16 45 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -32.75 380.99 -6.12 -38.87 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.83 Total: 14.64 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.09 Total: 1.06 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.59 Total: -51.04 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.50 Total: -22.98 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.75 -6.12 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727155477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.404 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds