Wall clock time and date at job start Tue Mar 31 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46975 * 2 1 4 4 H 1.09003 * 109.47255 * 55.00331 * 3 2 1 5 5 N 1.46501 * 109.47341 * 295.00060 * 3 2 1 6 6 C 1.34773 * 119.99932 * 85.00031 * 5 3 2 7 7 O 1.21507 * 120.00176 * 359.97438 * 6 5 3 8 8 O 1.34639 * 120.00225 * 180.02562 * 6 5 3 9 9 C 1.45193 * 117.00431 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47262 * 59.99827 * 9 8 6 11 11 C 1.52996 * 109.47503 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47230 * 300.00013 * 9 8 6 13 13 C 1.50705 * 109.47039 * 175.00209 * 3 2 1 14 14 O 1.21299 * 119.99726 * 120.00448 * 13 3 2 15 15 N 1.34777 * 119.99695 * 299.99579 * 13 3 2 16 16 C 1.40597 * 119.99674 * 179.97438 * 15 13 3 17 17 C 1.40648 * 126.08199 * 359.97438 * 16 15 13 18 18 N 1.30907 * 108.38289 * 179.77574 * 17 16 15 19 19 N 1.40067 * 108.41135 * 0.38341 * 18 17 16 20 20 C 1.37320 * 126.07294 * 179.87911 * 19 18 17 21 21 H 1.08002 * 120.00430 * 179.69232 * 20 19 18 22 22 C 1.38992 * 119.99664 * 359.41108 * 20 19 18 23 23 N 1.31294 * 120.00157 * 0.27652 * 22 20 19 24 24 Si 1.86803 * 119.99838 * 180.27798 * 22 20 19 25 25 H 1.48506 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99952 * 24 22 20 27 27 H 1.48498 * 109.47018 * 239.99998 * 24 22 20 28 28 C 1.35682 * 126.07675 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.46785 * 299.99839 * 1 2 3 30 30 H 1.09003 * 109.47112 * 59.99868 * 1 2 3 31 31 H 1.08993 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46912 * 240.00457 * 2 1 3 33 33 H 1.09003 * 109.47112 * 120.00132 * 2 1 3 34 34 H 0.97001 * 119.99852 * 265.00335 * 5 3 2 35 35 H 1.09008 * 109.46823 * 60.00160 * 10 9 8 36 36 H 1.08994 * 109.47358 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47462 * 300.00696 * 10 9 8 38 38 H 1.09000 * 109.47334 * 60.00195 * 11 9 8 39 39 H 1.09003 * 109.47578 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47439 * 300.00255 * 11 9 8 41 41 H 1.09005 * 109.46634 * 60.00006 * 12 9 8 42 42 H 1.08997 * 109.47041 * 179.97438 * 12 9 8 43 43 H 1.08997 * 109.47203 * 300.00299 * 12 9 8 44 44 H 0.96997 * 119.99849 * 0.02562 * 15 13 3 45 45 H 1.08000 * 125.80726 * 0.02562 * 17 16 15 46 46 H 0.96996 * 120.00263 * 179.97438 * 23 22 20 47 47 H 1.07994 * 126.25033 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3669 7 8 -0.3410 2.6318 -0.4326 8 8 0.0787 3.2660 -2.5175 9 6 -1.2475 3.8546 -2.5703 10 6 -1.3718 4.9296 -1.4887 11 6 -1.4708 4.4862 -3.9458 12 6 -2.2978 2.7678 -2.3322 13 6 3.5420 1.4443 0.1238 14 8 4.2217 1.9437 -0.7479 15 7 4.1298 0.8912 1.2031 16 6 5.5310 0.8924 1.3184 17 6 6.4381 1.4319 0.3887 18 7 7.6523 1.2486 0.8424 19 7 7.5694 0.5799 2.0704 20 6 8.6285 0.2044 2.8597 21 1 8.4509 -0.3051 3.7953 22 6 9.9294 0.4748 2.4517 23 7 10.1454 1.0940 1.3143 24 14 11.3704 -0.0429 3.5217 25 1 10.8627 -0.7181 4.7431 26 1 12.2392 -0.9784 2.7633 27 1 12.1549 1.1568 3.9097 28 6 6.2487 0.3725 2.3458 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2719 2.1232 -1.9978 35 1 -0.6236 5.7040 -1.6584 36 1 -2.3672 5.3719 -1.5287 37 1 -1.2129 4.4794 -0.5089 38 1 -1.3825 3.7200 -4.7161 39 1 -2.4666 4.9277 -3.9857 40 1 -0.7227 5.2603 -4.1160 41 1 -2.1389 2.3175 -1.3523 42 1 -3.2933 3.2098 -2.3714 43 1 -2.2092 2.0019 -3.1026 44 1 3.5861 0.4916 1.9000 45 1 6.1772 1.9185 -0.5395 46 1 11.0532 1.2830 1.0297 47 1 5.8481 -0.1167 3.2213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727155477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:37 Heat of formation + Delta-G solvation = -59.641434 kcal Electronic energy + Delta-G solvation = -29614.310132 eV Core-core repulsion = 25412.532762 eV Total energy + Delta-G solvation = -4201.777370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11365 -41.63487 -40.51449 -38.51024 -36.28025 -36.00747 -35.20296 -34.91874 -33.02777 -32.23166 -30.03749 -28.38478 -28.28151 -28.23460 -26.60737 -23.80706 -23.27443 -22.71592 -21.58054 -21.27939 -21.02334 -19.62467 -19.09890 -18.12959 -17.57219 -17.41881 -17.31522 -16.93133 -16.36781 -16.14213 -15.75086 -15.53250 -15.45946 -15.08290 -15.01622 -14.78439 -14.59765 -14.33006 -13.60932 -13.48565 -13.33195 -13.31103 -13.08499 -13.00194 -12.92839 -12.86878 -12.85357 -12.78318 -12.49500 -12.43334 -12.23180 -12.02525 -11.88461 -11.81790 -11.31390 -11.03424 -11.03124 -10.85059 -10.75415 -10.20649 -10.09438 -8.54014 -8.46387 -6.23488 1.04216 1.17136 1.40948 1.45618 1.59590 1.76159 1.85913 2.04942 2.26585 2.50686 2.88759 3.10039 3.12838 3.64598 3.79639 3.83238 3.86211 3.99537 4.01632 4.33954 4.45092 4.51214 4.60624 4.61838 4.67270 4.76864 4.81554 4.85994 4.89320 4.92477 4.97943 5.01657 5.07594 5.11434 5.15051 5.25902 5.30280 5.34092 5.40615 5.42488 5.45682 5.60884 5.96831 6.30623 6.36082 6.65900 6.74378 7.28001 7.33089 7.47414 7.69112 8.53149 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.002062 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.038223 B =13573.361364 C =14123.157206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.165 3.835 4 H 0.126 0.874 5 N -0.695 5.695 6 C 0.655 3.345 7 O -0.573 6.573 8 O -0.374 6.374 9 C 0.124 3.876 10 C -0.180 4.180 11 C -0.138 4.138 12 C -0.177 4.177 13 C 0.498 3.502 14 O -0.567 6.567 15 N -0.604 5.604 16 C -0.045 4.045 17 C -0.058 4.058 18 N -0.311 5.311 19 N -0.169 5.169 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.008 4.008 23 N -0.825 5.825 24 Si 1.018 2.982 25 H -0.240 1.240 26 H -0.273 1.273 27 H -0.274 1.274 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.413 0.587 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.422 0.578 45 H 0.168 0.832 46 H 0.276 0.724 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.917 0.283 -2.935 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.057 3.943 4 H 0.143 0.857 5 N -0.355 5.355 6 C 0.409 3.591 7 O -0.463 6.463 8 O -0.289 6.289 9 C 0.088 3.912 10 C -0.237 4.237 11 C -0.195 4.195 12 C -0.235 4.235 13 C 0.284 3.716 14 O -0.446 6.446 15 N -0.249 5.249 16 C -0.151 4.151 17 C -0.233 4.233 18 N -0.143 5.143 19 N 0.062 4.938 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.219 4.219 23 N -0.453 5.453 24 Si 0.837 3.163 25 H -0.162 1.162 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.227 4.227 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.260 0.740 45 H 0.185 0.815 46 H 0.085 0.915 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.497 0.928 -3.488 22.785 hybrid contribution 0.128 -0.168 0.187 0.282 sum -22.369 0.759 -3.302 22.624 Atomic orbital electron populations 1.21721 0.93529 1.01623 1.02311 1.21993 0.97877 0.92368 1.04395 1.20712 0.88925 0.96718 0.87909 0.85675 1.44410 1.14822 1.58868 1.17405 1.17892 0.82487 0.76979 0.81718 1.90890 1.51574 1.63842 1.39998 1.86335 1.38245 1.68202 1.36075 1.22439 0.77394 0.93104 0.98284 1.22478 1.03653 0.98021 0.99547 1.21897 1.03839 1.01050 0.92692 1.22467 0.99036 0.98534 1.03417 1.20885 0.90589 0.78410 0.81701 1.90608 1.65559 1.46887 1.41565 1.42257 1.03367 1.56829 1.22492 1.17276 0.83560 1.15198 0.99053 1.24182 0.90149 1.06992 1.01988 1.78161 1.20037 1.18825 0.97296 1.44848 1.04435 1.32096 1.12411 1.20651 0.83849 1.39901 1.03920 0.84074 1.26876 1.02412 0.94994 0.97654 1.70400 1.22849 1.31804 1.20286 0.84545 0.75487 0.78202 0.78032 1.16237 1.19864 1.19933 1.22028 0.84107 1.13448 1.03077 0.91956 0.94000 0.91630 0.91315 0.87987 0.75001 0.92694 0.88948 0.91428 0.91306 0.87743 0.91757 0.91144 0.89110 0.92120 0.73983 0.81484 0.91465 0.79297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.51 71.98 0.61 -1.81 16 2 C -0.13 -2.36 5.55 30.60 0.17 -2.19 16 3 C 0.17 3.87 2.67 44.25 0.12 3.98 16 4 H 0.13 2.76 7.58 -2.39 -0.02 2.74 16 5 N -0.69 -17.45 4.91 -573.72 -2.82 -20.26 16 6 C 0.66 16.46 6.62 129.79 0.86 17.32 16 7 O -0.57 -14.80 9.01 19.82 0.18 -14.63 16 8 O -0.37 -8.82 9.94 -55.48 -0.55 -9.38 16 9 C 0.12 2.20 1.13 -10.79 -0.01 2.19 16 10 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 11 C -0.14 -1.71 8.85 71.98 0.64 -1.07 16 12 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 13 C 0.50 15.81 7.19 87.66 0.63 16.44 16 14 O -0.57 -22.98 12.99 -3.09 -0.04 -23.02 16 15 N -0.60 -19.06 5.33 -303.92 -1.62 -20.68 16 16 C -0.04 -1.96 6.90 37.73 0.26 -1.70 16 17 C -0.06 -3.07 10.85 85.42 0.93 -2.14 16 18 N -0.31 -18.54 10.40 -56.47 -0.59 -19.13 16 19 N -0.17 -9.21 3.74 -190.01 -0.71 -9.92 16 20 C -0.35 -18.37 10.25 84.01 0.86 -17.51 16 21 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 22 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 23 N -0.83 -47.51 11.81 21.66 0.26 -47.26 16 24 Si 1.02 38.33 29.55 68.60 2.03 40.35 16 25 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 26 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 27 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 28 C -0.08 -3.39 11.49 83.37 0.96 -2.43 16 29 H 0.06 1.16 7.84 -2.39 -0.02 1.14 16 30 H 0.04 0.89 5.64 -2.39 -0.01 0.87 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.47 7.43 -2.39 -0.02 1.45 16 34 H 0.41 10.94 7.90 -92.71 -0.73 10.20 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.51 5.88 -2.39 -0.01 1.49 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.43 5.88 -2.38 -0.01 1.41 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.42 9.31 8.18 -92.71 -0.76 8.55 16 45 H 0.17 8.96 5.92 -2.91 -0.02 8.94 16 46 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.19 6.49 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -75.03 380.99 3.36 -71.67 By element: Atomic # 1 Polarization: 46.37 SS G_CDS: -0.47 Total: 45.90 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.70 Total: 6.35 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.48 Total: -117.25 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.41 Total: -47.02 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Total: -75.03 3.36 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727155477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.032 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds