Wall clock time and date at job start Tue Mar 31 2020 21:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 114.00021 * 2 1 4 4 C 1.53003 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47091 * 65.00312 * 4 3 2 6 6 C 1.46497 * 119.99863 * 263.50352 * 5 4 3 7 7 C 1.53007 * 109.46806 * 264.15814 * 6 5 4 8 8 C 1.53000 * 109.47140 * 65.00140 * 7 6 5 9 9 C 1.53006 * 109.47039 * 184.99937 * 7 6 5 10 10 C 1.34778 * 120.00269 * 83.49622 * 5 4 3 11 11 O 1.21365 * 119.99936 * 184.13167 * 10 5 4 12 12 C 1.49313 * 119.99898 * 4.13510 * 10 5 4 13 13 O 1.21406 * 120.00005 * 354.47957 * 12 10 5 14 14 N 1.34775 * 120.00155 * 174.48069 * 12 10 5 15 15 C 1.40286 * 120.00188 * 179.97438 * 14 12 10 16 16 C 1.40722 * 126.10034 * 359.97438 * 15 14 12 17 17 N 1.30881 * 108.37643 * 179.73740 * 16 15 14 18 18 N 1.40058 * 108.43243 * 0.44610 * 17 16 15 19 19 C 1.37294 * 126.05408 * 179.82051 * 18 17 16 20 20 H 1.07998 * 120.00563 * 179.69163 * 19 18 17 21 21 C 1.39014 * 120.00079 * 359.95401 * 19 18 17 22 22 N 1.31289 * 119.99571 * 359.73433 * 21 19 18 23 23 Si 1.86792 * 120.00299 * 179.72695 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00707 * 23 21 19 25 25 H 1.48501 * 109.47377 * 210.00465 * 23 21 19 26 26 H 1.48500 * 109.47194 * 330.00740 * 23 21 19 27 27 C 1.35784 * 126.10048 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46518 * 299.99936 * 1 2 3 30 30 H 1.08993 * 109.46942 * 59.99983 * 1 2 3 31 31 H 1.08997 * 109.47226 * 60.00105 * 3 2 1 32 32 H 1.09003 * 109.47376 * 300.00273 * 3 2 1 33 33 H 1.08991 * 109.47187 * 304.99962 * 4 3 2 34 34 H 1.09004 * 109.47012 * 184.99712 * 4 3 2 35 35 H 1.09004 * 109.47178 * 24.15610 * 6 5 4 36 36 H 1.09003 * 109.47270 * 144.15958 * 6 5 4 37 37 H 1.08991 * 109.47017 * 304.99882 * 7 6 5 38 38 H 1.09001 * 109.46627 * 300.00114 * 8 7 6 39 39 H 1.08996 * 109.47073 * 59.99592 * 8 7 6 40 40 H 1.08999 * 109.46908 * 179.97438 * 8 7 6 41 41 H 1.09003 * 109.46854 * 59.99676 * 9 7 6 42 42 H 1.08998 * 109.46981 * 180.02562 * 9 7 6 43 43 H 1.09001 * 109.46665 * 300.00020 * 9 7 6 44 44 H 0.97004 * 119.99753 * 0.02562 * 14 12 10 45 45 H 1.08003 * 125.80918 * 0.02562 * 16 15 14 46 46 H 0.96999 * 119.99605 * 179.97438 * 22 21 19 47 47 H 1.08006 * 126.25506 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2423 -0.8753 -1.3030 7 6 5.7384 -1.1242 -1.1008 8 6 6.1423 -0.6867 0.3085 9 6 6.0358 -2.6147 -1.2770 10 6 4.1353 1.3182 -2.3586 11 8 4.4270 0.7939 -3.4135 12 6 3.9533 2.7984 -2.2857 13 8 3.5643 3.3122 -1.2568 14 7 4.2207 3.5641 -3.3621 15 6 4.0491 4.9547 -3.2938 16 6 3.6064 5.6815 -2.1730 17 7 3.5790 6.9512 -2.4892 18 7 3.9910 7.0850 -3.8210 19 6 4.0921 8.2616 -4.5213 20 1 4.4268 8.2520 -5.5481 21 6 3.7687 9.4660 -3.9071 22 7 3.3616 9.4778 -2.6590 23 14 3.9134 11.0676 -4.8575 24 1 2.6266 11.3561 -5.5402 25 1 4.2345 12.1728 -3.9190 26 1 4.9941 10.9472 -5.8688 27 6 4.2796 5.8395 -4.2976 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 3.6808 -1.3765 -0.5146 36 1 3.9364 -1.2679 -2.2728 37 1 6.3045 -0.5515 -1.8353 38 1 5.9304 0.3751 0.4340 39 1 5.5762 -1.2594 1.0430 40 1 7.2080 -0.8645 0.4526 41 1 5.7479 -2.9264 -2.2810 42 1 7.1015 -2.7921 -1.1325 43 1 5.4696 -3.1874 -0.5424 44 1 4.5311 3.1535 -4.1843 45 1 3.3397 5.2631 -1.2137 46 1 3.1363 10.3182 -2.2303 47 1 4.6281 5.6011 -5.2917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746363433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:04 Heat of formation + Delta-G solvation = -23.395647 kcal Electronic energy + Delta-G solvation = -30046.933171 eV Core-core repulsion = 25846.727536 eV Total energy + Delta-G solvation = -4200.205635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79058 -39.63628 -38.15817 -37.87266 -36.68263 -34.83158 -33.87974 -33.14957 -30.34891 -29.91856 -28.18303 -27.35980 -27.06007 -26.26495 -25.08774 -23.72236 -22.54350 -21.12652 -20.55794 -19.57333 -19.28419 -17.78700 -17.29829 -16.81644 -16.30820 -16.08442 -15.67949 -15.52195 -15.36412 -15.13440 -14.82687 -14.59530 -14.31263 -13.93792 -13.75262 -13.54590 -13.09499 -13.02019 -13.00080 -12.73214 -12.39719 -12.29176 -12.00250 -11.80893 -11.75026 -11.53188 -11.39584 -11.33361 -11.28256 -11.04312 -10.99918 -10.82837 -10.69662 -10.57371 -10.28930 -9.70974 -9.25250 -8.97491 -8.88559 -8.65445 -8.15564 -6.80250 -6.62944 -4.30099 1.66854 2.57556 2.91542 3.02252 3.07043 3.30565 3.64795 3.68819 3.76398 3.86272 4.34407 4.51287 4.72534 4.76999 4.89433 4.95818 4.96100 5.08404 5.10749 5.23611 5.31271 5.38369 5.44734 5.45102 5.50986 5.53843 5.66548 5.72134 5.74094 5.77960 5.93153 5.98087 6.11645 6.14671 6.18310 6.33326 6.45919 6.74219 6.86229 6.92833 7.04970 7.14254 7.22867 7.72185 7.83168 8.10494 8.15934 8.46907 8.67220 9.28601 9.57294 10.32834 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002550 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.486708 B =10976.016790 C =11813.974929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.050 3.950 4 C 0.098 3.902 5 N -0.576 5.576 6 C 0.124 3.876 7 C -0.115 4.115 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.511 3.489 11 O -0.529 6.529 12 C 0.484 3.516 13 O -0.521 6.521 14 N -0.582 5.582 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -18.137 4.804 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.027 4.027 4 C -0.024 4.024 5 N -0.308 5.308 6 C 0.002 3.998 7 C -0.135 4.135 8 C -0.205 4.205 9 C -0.200 4.200 10 C 0.294 3.706 11 O -0.405 6.405 12 C 0.266 3.734 13 O -0.400 6.400 14 N -0.224 5.224 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.084 -16.871 5.564 17.765 hybrid contribution 0.108 -0.148 -1.154 1.169 sum 0.192 -17.019 4.410 17.582 Atomic orbital electron populations 1.22683 0.81397 1.02235 1.00014 1.87829 1.19443 1.28613 1.95510 1.23011 0.94035 0.84164 1.01526 1.22387 0.92835 1.02033 0.85116 1.47662 1.64653 1.08343 1.10164 1.21634 0.95068 0.79585 1.03562 1.21530 0.96598 0.97112 0.98232 1.21893 1.01064 1.01632 0.95939 1.21743 1.01499 0.94966 1.01801 1.20270 0.78159 0.88147 0.84015 1.90718 1.47050 1.74159 1.28600 1.19718 0.82000 0.87141 0.84589 1.90518 1.46594 1.73754 1.29164 1.42188 1.60984 1.05307 1.13887 1.17248 1.21635 0.81063 0.97550 1.24136 1.06082 0.90804 0.99158 1.78261 1.23103 1.15309 0.92486 1.44556 1.34854 1.03689 1.07381 1.19924 1.47185 0.81339 0.96935 0.86454 1.25666 0.95305 1.00256 0.95891 1.70208 1.31176 1.27926 1.10083 0.85805 0.79333 0.79686 0.79228 1.19526 1.20033 1.18735 1.21315 1.16816 0.85578 0.99196 0.90028 0.94196 0.94221 0.92121 0.92405 0.90094 0.84822 0.89449 0.90182 0.90761 0.92316 0.92665 0.92819 0.92480 0.92520 0.92607 0.75631 0.80529 0.91362 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.73 10.52 -35.23 -0.37 -5.10 16 3 C 0.05 0.62 5.71 37.16 0.21 0.83 16 4 C 0.10 1.17 4.28 -4.04 -0.02 1.15 16 5 N -0.58 -7.44 2.17 -174.24 -0.38 -7.81 16 6 C 0.12 1.36 4.79 -4.04 -0.02 1.34 16 7 C -0.12 -1.14 3.08 -90.61 -0.28 -1.42 16 8 C -0.15 -1.33 8.38 37.16 0.31 -1.01 16 9 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 10 C 0.51 7.99 7.63 -11.65 -0.09 7.90 16 11 O -0.53 -9.03 16.14 5.48 0.09 -8.94 16 12 C 0.48 8.50 7.62 -11.65 -0.09 8.42 16 13 O -0.52 -9.59 9.11 5.45 0.05 -9.54 16 14 N -0.58 -10.80 5.45 -10.46 -0.06 -10.86 16 15 C -0.07 -1.56 6.90 -83.93 -0.58 -2.14 16 16 C -0.03 -0.65 10.85 -17.02 -0.18 -0.84 16 17 N -0.26 -7.32 10.39 30.81 0.32 -7.00 16 18 N -0.14 -3.70 3.73 -11.40 -0.04 -3.74 16 19 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 20 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 22 N -0.77 -20.90 11.81 55.50 0.66 -20.24 16 23 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.84 7.24 -51.93 -0.38 0.47 16 33 H 0.08 0.80 6.94 -51.93 -0.36 0.44 16 34 H 0.13 1.78 5.35 -51.94 -0.28 1.51 16 35 H 0.09 0.87 7.89 -51.93 -0.41 0.46 16 36 H 0.08 0.97 7.55 -51.93 -0.39 0.57 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.58 6.46 -51.93 -0.34 0.25 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.41 6.68 8.31 -40.82 -0.34 6.35 16 45 H 0.18 4.21 5.92 -52.48 -0.31 3.90 16 46 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -31.15 388.13 -5.62 -36.77 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.00 Total: 11.64 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.28 Total: 5.48 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.50 Total: -49.66 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.23 Total: -23.58 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.15 -5.62 -36.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746363433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.377 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds