Wall clock time and date at job start Tue Mar 31 2020 21:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 114.00021 * 2 1 4 4 C 1.53003 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47091 * 65.00312 * 4 3 2 6 6 C 1.46497 * 119.99863 * 263.50352 * 5 4 3 7 7 C 1.53007 * 109.46806 * 264.15814 * 6 5 4 8 8 C 1.53000 * 109.47140 * 65.00140 * 7 6 5 9 9 C 1.53006 * 109.47039 * 184.99937 * 7 6 5 10 10 C 1.34778 * 120.00269 * 83.49622 * 5 4 3 11 11 O 1.21365 * 119.99936 * 184.13167 * 10 5 4 12 12 C 1.49313 * 119.99898 * 4.13510 * 10 5 4 13 13 O 1.21406 * 120.00005 * 354.47957 * 12 10 5 14 14 N 1.34775 * 120.00155 * 174.48069 * 12 10 5 15 15 C 1.40286 * 120.00188 * 179.97438 * 14 12 10 16 16 C 1.40722 * 126.10034 * 359.97438 * 15 14 12 17 17 N 1.30881 * 108.37643 * 179.73740 * 16 15 14 18 18 N 1.40058 * 108.43243 * 0.44610 * 17 16 15 19 19 C 1.37294 * 126.05408 * 179.82051 * 18 17 16 20 20 H 1.07998 * 120.00563 * 179.69163 * 19 18 17 21 21 C 1.39014 * 120.00079 * 359.95401 * 19 18 17 22 22 N 1.31289 * 119.99571 * 359.73433 * 21 19 18 23 23 Si 1.86792 * 120.00299 * 179.72695 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00707 * 23 21 19 25 25 H 1.48501 * 109.47377 * 210.00465 * 23 21 19 26 26 H 1.48500 * 109.47194 * 330.00740 * 23 21 19 27 27 C 1.35784 * 126.10048 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46518 * 299.99936 * 1 2 3 30 30 H 1.08993 * 109.46942 * 59.99983 * 1 2 3 31 31 H 1.08997 * 109.47226 * 60.00105 * 3 2 1 32 32 H 1.09003 * 109.47376 * 300.00273 * 3 2 1 33 33 H 1.08991 * 109.47187 * 304.99962 * 4 3 2 34 34 H 1.09004 * 109.47012 * 184.99712 * 4 3 2 35 35 H 1.09004 * 109.47178 * 24.15610 * 6 5 4 36 36 H 1.09003 * 109.47270 * 144.15958 * 6 5 4 37 37 H 1.08991 * 109.47017 * 304.99882 * 7 6 5 38 38 H 1.09001 * 109.46627 * 300.00114 * 8 7 6 39 39 H 1.08996 * 109.47073 * 59.99592 * 8 7 6 40 40 H 1.08999 * 109.46908 * 179.97438 * 8 7 6 41 41 H 1.09003 * 109.46854 * 59.99676 * 9 7 6 42 42 H 1.08998 * 109.46981 * 180.02562 * 9 7 6 43 43 H 1.09001 * 109.46665 * 300.00020 * 9 7 6 44 44 H 0.97004 * 119.99753 * 0.02562 * 14 12 10 45 45 H 1.08003 * 125.80918 * 0.02562 * 16 15 14 46 46 H 0.96999 * 119.99605 * 179.97438 * 22 21 19 47 47 H 1.08006 * 126.25506 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2423 -0.8753 -1.3030 7 6 5.7384 -1.1242 -1.1008 8 6 6.1423 -0.6867 0.3085 9 6 6.0358 -2.6147 -1.2770 10 6 4.1353 1.3182 -2.3586 11 8 4.4270 0.7939 -3.4135 12 6 3.9533 2.7984 -2.2857 13 8 3.5643 3.3122 -1.2568 14 7 4.2207 3.5641 -3.3621 15 6 4.0491 4.9547 -3.2938 16 6 3.6064 5.6815 -2.1730 17 7 3.5790 6.9512 -2.4892 18 7 3.9910 7.0850 -3.8210 19 6 4.0921 8.2616 -4.5213 20 1 4.4268 8.2520 -5.5481 21 6 3.7687 9.4660 -3.9071 22 7 3.3616 9.4778 -2.6590 23 14 3.9134 11.0676 -4.8575 24 1 2.6266 11.3561 -5.5402 25 1 4.2345 12.1728 -3.9190 26 1 4.9941 10.9472 -5.8688 27 6 4.2796 5.8395 -4.2976 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 3.6808 -1.3765 -0.5146 36 1 3.9364 -1.2679 -2.2728 37 1 6.3045 -0.5515 -1.8353 38 1 5.9304 0.3751 0.4340 39 1 5.5762 -1.2594 1.0430 40 1 7.2080 -0.8645 0.4526 41 1 5.7479 -2.9264 -2.2810 42 1 7.1015 -2.7921 -1.1325 43 1 5.4696 -3.1874 -0.5424 44 1 4.5311 3.1535 -4.1843 45 1 3.3397 5.2631 -1.2137 46 1 3.1363 10.3182 -2.2303 47 1 4.6281 5.6011 -5.2917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746363433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:03 Heat of formation + Delta-G solvation = -43.890288 kcal Electronic energy + Delta-G solvation = -30047.821886 eV Core-core repulsion = 25846.727536 eV Total energy + Delta-G solvation = -4201.094349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19505 -41.34089 -39.56648 -38.90981 -37.70627 -36.21152 -35.25991 -34.76210 -32.28397 -30.89823 -29.92625 -28.22553 -28.02858 -27.21784 -26.77179 -24.94578 -23.75988 -22.89675 -21.64959 -21.30034 -20.55330 -19.41668 -18.70050 -17.97323 -17.48733 -17.36420 -17.20200 -16.79469 -16.69414 -16.33461 -15.93260 -15.82984 -15.54766 -15.40242 -15.08025 -14.92054 -14.74613 -14.40137 -13.89174 -13.72834 -13.50399 -13.31974 -13.24231 -13.05638 -12.92337 -12.90252 -12.77500 -12.63225 -12.32978 -12.20464 -12.11476 -12.08549 -11.86294 -11.76686 -11.54360 -11.05753 -10.85984 -10.64106 -10.27862 -10.13063 -9.79310 -8.60791 -8.48863 -6.25924 0.29386 1.28568 1.30061 1.41886 1.58115 1.72236 2.04120 2.10981 2.44057 2.54112 2.82502 2.88801 3.07663 3.41878 3.90102 3.98253 4.09777 4.14678 4.18888 4.39884 4.40849 4.50538 4.53005 4.55424 4.58134 4.65723 4.71047 4.81343 4.84484 4.87508 4.90994 4.96681 4.98866 5.01084 5.05822 5.24575 5.27235 5.28667 5.38164 5.42800 5.53599 5.90796 5.95940 6.19504 6.23547 6.41899 6.67519 6.77660 7.07791 7.41405 7.64131 8.50272 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.002550 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.486708 B =10976.016790 C =11813.974929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.564 5.564 6 C 0.124 3.876 7 C -0.112 4.112 8 C -0.146 4.146 9 C -0.138 4.138 10 C 0.515 3.485 11 O -0.545 6.545 12 C 0.486 3.514 13 O -0.527 6.527 14 N -0.584 5.584 15 C -0.054 4.054 16 C -0.044 4.044 17 N -0.307 5.307 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.140 0.860 21 C -0.004 4.004 22 N -0.820 5.820 23 Si 1.018 2.982 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.246 1.246 27 C -0.077 4.077 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.420 0.580 45 H 0.181 0.819 46 H 0.278 0.722 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -19.811 4.592 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.023 4.023 4 C -0.023 4.023 5 N -0.295 5.295 6 C 0.002 3.998 7 C -0.131 4.131 8 C -0.203 4.203 9 C -0.196 4.196 10 C 0.297 3.703 11 O -0.423 6.423 12 C 0.268 3.732 13 O -0.406 6.406 14 N -0.228 5.228 15 C -0.161 4.161 16 C -0.219 4.219 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.485 4.485 20 H 0.157 0.843 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.169 1.169 27 C -0.228 4.228 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.258 0.742 45 H 0.197 0.803 46 H 0.087 0.913 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.493 -18.604 5.366 19.368 hybrid contribution -0.052 0.128 -0.991 1.000 sum 0.441 -18.476 4.375 18.992 Atomic orbital electron populations 1.22862 0.80130 1.03691 1.00167 1.87799 1.20822 1.28012 1.95524 1.22891 0.94168 0.84455 1.00769 1.22400 0.92621 1.01857 0.85374 1.47759 1.63040 1.09093 1.09610 1.21816 0.96250 0.77961 1.03728 1.21483 0.95165 0.98237 0.98239 1.21877 1.01809 1.01046 0.95556 1.21713 1.02244 0.93472 1.02142 1.19838 0.78720 0.87075 0.84674 1.90715 1.48320 1.73976 1.29279 1.20222 0.80731 0.88190 0.84014 1.90529 1.46193 1.74380 1.29460 1.42131 1.61961 1.03769 1.14973 1.17271 1.19640 0.82770 0.96379 1.24286 1.06858 0.90693 1.00103 1.78154 1.24740 1.16901 0.94074 1.44815 1.36169 1.04981 1.07219 1.20619 1.48025 0.81740 0.98066 0.84311 1.26848 0.94096 1.03995 0.96672 1.70371 1.33110 1.28994 1.12294 0.84603 0.79810 0.74150 0.77741 1.18914 1.20063 1.16919 1.21983 1.15487 0.84672 1.00677 0.87964 0.93101 0.95037 0.90984 0.95143 0.87294 0.86320 0.87616 0.91151 0.93162 0.93525 0.91019 0.92198 0.92785 0.91813 0.91095 0.74248 0.80274 0.91253 0.79872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -8.89 10.52 -148.98 -1.57 -10.46 16 3 C 0.05 1.30 5.71 71.98 0.41 1.71 16 4 C 0.10 2.23 4.28 86.38 0.37 2.60 16 5 N -0.56 -13.93 2.17 -823.53 -1.78 -15.71 16 6 C 0.12 2.49 4.79 86.38 0.41 2.91 16 7 C -0.11 -2.01 3.08 -10.79 -0.03 -2.05 16 8 C -0.15 -2.27 8.38 71.98 0.60 -1.67 16 9 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 10 C 0.51 15.84 7.63 87.23 0.67 16.50 16 11 O -0.54 -18.29 16.14 -3.29 -0.05 -18.34 16 12 C 0.49 17.08 7.62 87.23 0.66 17.74 16 13 O -0.53 -19.60 9.11 -3.42 -0.03 -19.63 16 14 N -0.58 -21.55 5.45 -305.33 -1.66 -23.21 16 15 C -0.05 -2.46 6.90 37.83 0.26 -2.20 16 16 C -0.04 -2.26 10.85 85.44 0.93 -1.33 16 17 N -0.31 -17.88 10.39 -56.43 -0.59 -18.46 16 18 N -0.16 -8.94 3.73 -189.97 -0.71 -9.65 16 19 C -0.35 -18.46 10.25 84.02 0.86 -17.60 16 20 H 0.14 6.32 7.83 -2.91 -0.02 6.30 16 21 C 0.00 -0.20 5.50 84.96 0.47 0.27 16 22 N -0.82 -46.19 11.81 21.67 0.26 -45.93 16 23 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 27 C -0.08 -3.58 11.50 83.41 0.96 -2.62 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 0.89 7.24 -2.39 -0.02 0.87 16 33 H 0.11 1.87 6.94 -2.39 -0.02 1.86 16 34 H 0.12 3.11 5.35 -2.55 -0.01 3.10 16 35 H 0.11 1.79 7.89 -2.38 -0.02 1.77 16 36 H 0.07 1.60 7.55 -2.39 -0.02 1.58 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 0.84 6.46 -2.39 -0.02 0.82 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.42 13.45 8.31 -92.71 -0.77 12.68 16 45 H 0.18 8.88 5.92 -2.91 -0.02 8.86 16 46 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.18 6.88 8.06 -2.91 -0.02 6.86 16 Total: -1.00 -69.58 388.13 4.59 -64.99 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: 0.22 Total: 41.67 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 8.48 Total: 14.77 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.49 Total: -112.97 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -1.65 Total: -48.43 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.58 4.59 -64.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746363433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.095 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds