Wall clock time and date at job start Tue Mar 31 2020 21:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 C 1.52998 * 109.47017 * 239.99542 * 2 1 3 5 5 C 1.53008 * 109.46828 * 119.99648 * 2 1 3 6 6 N 1.46500 * 109.46771 * 59.99971 * 5 2 1 7 7 C 1.46505 * 120.00084 * 269.99637 * 6 5 2 8 8 C 1.53001 * 109.47240 * 263.07389 * 7 6 5 9 9 O 1.42898 * 109.46965 * 65.00144 * 8 7 6 10 10 C 1.34781 * 120.00341 * 89.99843 * 6 5 2 11 11 O 1.21374 * 119.99564 * 4.23888 * 10 6 5 12 12 C 1.49307 * 120.00403 * 183.95522 * 10 6 5 13 13 O 1.21400 * 119.99910 * 354.54551 * 12 10 6 14 14 N 1.34776 * 119.99978 * 174.54145 * 12 10 6 15 15 C 1.40288 * 119.99899 * 180.02562 * 14 12 10 16 16 C 1.40720 * 126.10147 * 359.69033 * 15 14 12 17 17 N 1.30878 * 108.37961 * 179.88059 * 16 15 14 18 18 N 1.40064 * 108.43073 * 0.37978 * 17 16 15 19 19 C 1.37303 * 126.05076 * 179.74018 * 18 17 16 20 20 H 1.07999 * 119.99717 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.00107 * 0.02562 * 19 18 17 22 22 N 1.31285 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47031 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46971 * 120.00425 * 23 21 19 26 26 H 1.48503 * 109.46809 * 240.00149 * 23 21 19 27 27 C 1.35790 * 126.10156 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.46849 * 300.00559 * 1 2 3 29 29 H 1.09006 * 109.46832 * 60.00356 * 1 2 3 30 30 H 1.08997 * 109.47585 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47004 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46821 * 299.99641 * 3 2 1 33 33 H 1.09005 * 109.47133 * 59.99573 * 3 2 1 34 34 H 1.09000 * 109.47209 * 300.00215 * 4 2 1 35 35 H 1.08996 * 109.47244 * 60.00398 * 4 2 1 36 36 H 1.09004 * 109.47026 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47373 * 300.00297 * 5 2 1 38 38 H 1.08991 * 109.46914 * 179.97438 * 5 2 1 39 39 H 1.08997 * 109.46860 * 23.07931 * 7 6 5 40 40 H 1.09007 * 109.46654 * 143.07315 * 7 6 5 41 41 H 1.08994 * 109.46866 * 184.99840 * 8 7 6 42 42 H 1.08997 * 109.46740 * 305.00008 * 8 7 6 43 43 H 0.96697 * 113.99754 * 180.02562 * 9 8 7 44 44 H 0.97001 * 119.99944 * 0.02562 * 14 12 10 45 45 H 1.07999 * 125.81042 * 0.02562 * 16 15 14 46 46 H 0.96996 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.08001 * 126.24680 * 359.92788 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1024 1.2494 7 6 0.2714 -2.4267 1.8837 8 6 0.5216 -2.9455 3.3012 9 8 1.0846 -1.9014 4.0981 10 6 2.2799 -3.0748 0.6658 11 8 3.3751 -2.8210 0.2083 12 6 1.7422 -4.4655 0.5878 13 8 0.6951 -4.7431 1.1358 14 7 2.4193 -5.4127 -0.0912 15 6 1.9138 -6.7192 -0.1649 16 6 0.7221 -7.1817 0.4234 17 7 0.5845 -8.4507 0.1343 18 7 1.6818 -8.8501 -0.6392 19 6 1.9045 -10.1109 -1.1354 20 1 2.7881 -10.3115 -1.7230 21 6 0.9926 -11.1288 -0.8815 22 7 -0.0818 -10.8847 -0.1676 23 14 1.2961 -12.8442 -1.5560 24 1 2.5679 -12.8569 -2.3224 25 1 1.3856 -13.8097 -0.4313 26 1 0.1755 -13.2294 -2.4511 27 6 2.4900 -7.7647 -0.8123 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -0.2074 2.1393 38 1 3.1299 -0.7216 1.2492 39 1 -0.3489 -1.5316 1.9285 40 1 -0.2389 -3.1936 1.3009 41 1 -0.4214 -3.2699 3.7410 42 1 1.2134 -3.7869 3.2633 43 1 1.2700 -2.1600 5.0112 44 1 3.2561 -5.1909 -0.5288 45 1 0.0364 -6.5896 1.0113 46 1 -0.7182 -11.5950 0.0092 47 1 3.4183 -7.7410 -1.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746394399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:49 Heat of formation + Delta-G solvation = -27.600016 kcal Electronic energy + Delta-G solvation = -30451.297432 eV Core-core repulsion = 26250.909482 eV Total energy + Delta-G solvation = -4200.387950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90338 -39.70341 -38.33464 -37.38349 -36.77843 -34.93341 -33.93459 -33.15470 -30.35255 -29.47798 -28.19416 -27.44481 -27.37806 -26.88068 -25.11162 -23.65376 -22.48137 -21.08084 -19.89814 -19.49969 -18.78552 -17.77912 -17.48575 -17.23673 -16.53512 -16.19458 -15.56982 -15.28803 -15.16010 -14.76526 -14.53585 -14.33818 -14.15200 -13.83179 -13.58701 -13.55961 -13.25552 -13.02625 -12.97155 -12.60755 -12.44033 -12.26223 -11.78834 -11.75924 -11.65296 -11.55771 -11.38978 -11.31741 -11.22665 -10.98528 -10.87122 -10.77885 -10.69660 -10.54802 -10.31657 -9.99725 -9.26213 -8.96779 -8.87811 -8.61943 -8.15943 -6.80506 -6.63323 -4.30462 1.67734 2.58690 2.90478 3.02240 3.07937 3.30701 3.67167 3.68650 3.84813 4.25923 4.34127 4.51338 4.64817 4.68677 4.78753 4.95320 4.95597 5.12336 5.22906 5.31471 5.36962 5.42791 5.47746 5.62641 5.65007 5.73448 5.78815 5.80167 5.84830 5.94659 5.96504 6.07431 6.17669 6.20578 6.31129 6.33168 6.45441 6.74133 6.86133 6.94344 7.13808 7.19466 7.55492 7.72656 7.83807 8.11029 8.15632 8.46834 8.67000 9.28301 9.56938 10.32515 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002551 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.958335 B =10974.328715 C =11594.562779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.135 4.135 5 C 0.128 3.872 6 N -0.573 5.573 7 C 0.096 3.904 8 C 0.065 3.935 9 O -0.578 6.578 10 C 0.511 3.489 11 O -0.527 6.527 12 C 0.483 3.517 13 O -0.522 6.522 14 N -0.582 5.582 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.077 4.077 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.375 0.625 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 18.303 2.993 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.192 4.192 5 C 0.005 3.995 6 N -0.305 5.305 7 C -0.026 4.026 8 C -0.014 4.014 9 O -0.383 6.383 10 C 0.295 3.705 11 O -0.403 6.403 12 C 0.265 3.735 13 O -0.401 6.401 14 N -0.224 5.224 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.453 4.453 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.229 4.229 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.668 17.409 2.795 17.645 hybrid contribution 1.121 -0.248 -0.056 1.150 sum 1.790 17.161 2.739 17.470 Atomic orbital electron populations 1.21979 0.94497 1.02169 1.01484 1.20995 0.96111 0.95621 0.96108 1.21784 1.01143 0.94770 1.01777 1.21850 1.01536 0.99885 0.95969 1.21640 1.00319 0.80134 0.97400 1.47593 1.21505 1.07406 1.54033 1.22406 0.84836 1.02912 0.92449 1.22635 0.97799 0.89650 0.91297 1.86434 1.85619 1.40030 1.26239 1.20214 0.85111 0.86288 0.78932 1.90721 1.19864 1.82911 1.46840 1.19746 0.85694 0.85830 0.82256 1.90523 1.22578 1.80602 1.46370 1.42190 1.24002 1.07398 1.48805 1.17250 1.01050 0.83761 1.15425 1.24132 0.97605 0.93604 1.04856 1.78261 1.06562 1.10606 1.13723 1.44566 1.11693 1.06064 1.28190 1.19972 1.09683 0.82316 1.33375 0.86408 1.25665 0.94796 1.00842 0.95820 1.70214 1.07637 1.33354 1.28184 0.85744 0.79203 0.80172 0.78942 1.18615 1.19855 1.19853 1.21315 1.01079 0.87997 1.12500 0.92668 0.92779 0.92121 0.92464 0.92441 0.92600 0.93049 0.93209 0.91970 0.89581 0.89885 0.90109 0.85146 0.92558 0.92816 0.77813 0.75644 0.80548 0.91413 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.25 37.16 0.27 -1.06 16 2 C -0.09 -0.86 0.84 -154.50 -0.13 -0.99 16 3 C -0.14 -1.10 8.47 37.16 0.31 -0.79 16 4 C -0.14 -1.55 7.21 37.16 0.27 -1.28 16 5 C 0.13 1.42 4.58 -4.04 -0.02 1.40 16 6 N -0.57 -7.34 1.96 -174.24 -0.34 -7.68 16 7 C 0.10 1.15 4.06 -4.04 -0.02 1.13 16 8 C 0.06 0.76 6.80 37.16 0.25 1.01 16 9 O -0.58 -6.16 13.34 -35.23 -0.47 -6.63 16 10 C 0.51 7.86 5.94 -11.65 -0.07 7.79 16 11 O -0.53 -8.71 14.59 5.48 0.08 -8.63 16 12 C 0.48 8.44 7.59 -11.65 -0.09 8.35 16 13 O -0.52 -9.57 9.07 5.45 0.05 -9.52 16 14 N -0.58 -10.75 5.45 -10.46 -0.06 -10.81 16 15 C -0.07 -1.55 6.90 -83.93 -0.58 -2.13 16 16 C -0.03 -0.66 10.84 -17.02 -0.18 -0.84 16 17 N -0.26 -7.31 10.39 30.81 0.32 -6.99 16 18 N -0.14 -3.70 3.73 -11.40 -0.04 -3.75 16 19 C -0.32 -8.30 10.25 -14.82 -0.15 -8.45 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 22 N -0.77 -20.88 11.81 55.50 0.66 -20.22 16 23 Si 0.94 18.51 29.55 -169.99 -5.02 13.49 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 28 H 0.05 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.62 6.10 -51.93 -0.32 0.31 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.69 6.20 -51.93 -0.32 0.37 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 37 H 0.09 0.90 7.80 -51.93 -0.41 0.49 16 38 H 0.08 1.02 7.37 -51.93 -0.38 0.63 16 39 H 0.08 0.82 6.37 -51.93 -0.33 0.49 16 40 H 0.13 1.76 5.39 -51.93 -0.28 1.48 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.75 7.17 -51.93 -0.37 0.37 16 43 H 0.38 2.57 9.12 45.56 0.42 2.99 16 44 H 0.41 6.65 8.31 -40.82 -0.34 6.31 16 45 H 0.18 4.21 5.92 -52.49 -0.31 3.90 16 46 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -31.45 377.63 -5.53 -36.98 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.97 Total: 14.84 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.42 Total: 3.23 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.53 Total: -49.45 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.34 Total: -24.78 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.45 -5.53 -36.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746394399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.379 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds