Wall clock time and date at job start Tue Mar 31 2020 21:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 C 1.52998 * 109.47017 * 239.99542 * 2 1 3 5 5 C 1.53008 * 109.46828 * 119.99648 * 2 1 3 6 6 N 1.46500 * 109.46771 * 59.99971 * 5 2 1 7 7 C 1.46505 * 120.00084 * 269.99637 * 6 5 2 8 8 C 1.53001 * 109.47240 * 263.07389 * 7 6 5 9 9 O 1.42898 * 109.46965 * 65.00144 * 8 7 6 10 10 C 1.34781 * 120.00341 * 89.99843 * 6 5 2 11 11 O 1.21374 * 119.99564 * 4.23888 * 10 6 5 12 12 C 1.49307 * 120.00403 * 183.95522 * 10 6 5 13 13 O 1.21400 * 119.99910 * 354.54551 * 12 10 6 14 14 N 1.34776 * 119.99978 * 174.54145 * 12 10 6 15 15 C 1.40288 * 119.99899 * 180.02562 * 14 12 10 16 16 C 1.40720 * 126.10147 * 359.69033 * 15 14 12 17 17 N 1.30878 * 108.37961 * 179.88059 * 16 15 14 18 18 N 1.40064 * 108.43073 * 0.37978 * 17 16 15 19 19 C 1.37303 * 126.05076 * 179.74018 * 18 17 16 20 20 H 1.07999 * 119.99717 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.00107 * 0.02562 * 19 18 17 22 22 N 1.31285 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47031 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46971 * 120.00425 * 23 21 19 26 26 H 1.48503 * 109.46809 * 240.00149 * 23 21 19 27 27 C 1.35790 * 126.10156 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.46849 * 300.00559 * 1 2 3 29 29 H 1.09006 * 109.46832 * 60.00356 * 1 2 3 30 30 H 1.08997 * 109.47585 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47004 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46821 * 299.99641 * 3 2 1 33 33 H 1.09005 * 109.47133 * 59.99573 * 3 2 1 34 34 H 1.09000 * 109.47209 * 300.00215 * 4 2 1 35 35 H 1.08996 * 109.47244 * 60.00398 * 4 2 1 36 36 H 1.09004 * 109.47026 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47373 * 300.00297 * 5 2 1 38 38 H 1.08991 * 109.46914 * 179.97438 * 5 2 1 39 39 H 1.08997 * 109.46860 * 23.07931 * 7 6 5 40 40 H 1.09007 * 109.46654 * 143.07315 * 7 6 5 41 41 H 1.08994 * 109.46866 * 184.99840 * 8 7 6 42 42 H 1.08997 * 109.46740 * 305.00008 * 8 7 6 43 43 H 0.96697 * 113.99754 * 180.02562 * 9 8 7 44 44 H 0.97001 * 119.99944 * 0.02562 * 14 12 10 45 45 H 1.07999 * 125.81042 * 0.02562 * 16 15 14 46 46 H 0.96996 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.08001 * 126.24680 * 359.92788 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1024 1.2494 7 6 0.2714 -2.4267 1.8837 8 6 0.5216 -2.9455 3.3012 9 8 1.0846 -1.9014 4.0981 10 6 2.2799 -3.0748 0.6658 11 8 3.3751 -2.8210 0.2083 12 6 1.7422 -4.4655 0.5878 13 8 0.6951 -4.7431 1.1358 14 7 2.4193 -5.4127 -0.0912 15 6 1.9138 -6.7192 -0.1649 16 6 0.7221 -7.1817 0.4234 17 7 0.5845 -8.4507 0.1343 18 7 1.6818 -8.8501 -0.6392 19 6 1.9045 -10.1109 -1.1354 20 1 2.7881 -10.3115 -1.7230 21 6 0.9926 -11.1288 -0.8815 22 7 -0.0818 -10.8847 -0.1676 23 14 1.2961 -12.8442 -1.5560 24 1 2.5679 -12.8569 -2.3224 25 1 1.3856 -13.8097 -0.4313 26 1 0.1755 -13.2294 -2.4511 27 6 2.4900 -7.7647 -0.8123 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -0.2074 2.1393 38 1 3.1299 -0.7216 1.2492 39 1 -0.3489 -1.5316 1.9285 40 1 -0.2389 -3.1936 1.3009 41 1 -0.4214 -3.2699 3.7410 42 1 1.2134 -3.7869 3.2633 43 1 1.2700 -2.1600 5.0112 44 1 3.2561 -5.1909 -0.5288 45 1 0.0364 -6.5896 1.0113 46 1 -0.7182 -11.5950 0.0092 47 1 3.4183 -7.7410 -1.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746394399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:49 Heat of formation + Delta-G solvation = -50.341381 kcal Electronic energy + Delta-G solvation = -30452.283571 eV Core-core repulsion = 26250.909482 eV Total energy + Delta-G solvation = -4201.374090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24686 -41.40048 -39.72362 -38.50301 -37.67079 -36.28947 -35.36084 -34.80135 -32.28524 -30.44290 -29.93010 -28.39405 -28.13242 -27.97024 -26.84745 -24.90851 -23.65812 -22.88956 -21.42283 -21.07893 -19.72456 -19.41302 -18.68751 -18.36910 -17.71291 -17.45959 -17.36513 -16.73962 -16.51183 -16.00067 -15.74791 -15.39465 -15.32732 -15.22498 -15.08186 -14.84903 -14.49639 -14.38160 -14.13481 -13.58080 -13.51501 -13.41943 -13.27091 -12.98213 -12.94322 -12.86873 -12.53674 -12.53027 -12.40096 -12.18072 -12.03611 -12.02505 -11.85063 -11.64641 -11.53433 -11.08056 -10.91718 -10.86077 -10.25508 -10.13285 -9.72579 -8.60663 -8.49071 -6.26076 0.31846 1.28436 1.30946 1.42081 1.59435 1.72081 2.05368 2.10661 2.46173 2.54616 2.85067 3.07483 3.41798 3.43320 3.83307 3.86663 3.98777 4.16729 4.26595 4.39666 4.46310 4.53050 4.53837 4.54740 4.73066 4.77296 4.84199 4.88726 4.90266 4.92653 4.96854 4.98891 5.04374 5.06971 5.18062 5.25242 5.30302 5.36476 5.39815 5.45404 5.52875 5.91606 6.01497 6.23075 6.42817 6.67915 6.80166 6.86117 7.08836 7.41334 7.64009 8.50267 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002551 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.958335 B =10974.328715 C =11594.562779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.132 4.132 5 C 0.128 3.872 6 N -0.561 5.561 7 C 0.095 3.905 8 C 0.071 3.929 9 O -0.582 6.582 10 C 0.516 3.484 11 O -0.540 6.540 12 C 0.485 3.515 13 O -0.528 6.528 14 N -0.584 5.584 15 C -0.054 4.054 16 C -0.044 4.044 17 N -0.307 5.307 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.139 0.861 21 C -0.004 4.004 22 N -0.820 5.820 23 Si 1.018 2.982 24 H -0.243 1.243 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.077 4.077 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.393 0.607 44 H 0.420 0.580 45 H 0.180 0.820 46 H 0.278 0.722 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 19.950 2.787 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.190 4.190 4 C -0.189 4.189 5 C 0.006 3.994 6 N -0.292 5.292 7 C -0.027 4.027 8 C -0.007 4.007 9 O -0.390 6.390 10 C 0.298 3.702 11 O -0.418 6.418 12 C 0.267 3.733 13 O -0.407 6.407 14 N -0.229 5.229 15 C -0.160 4.160 16 C -0.220 4.220 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.484 4.484 20 H 0.157 0.843 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.837 3.163 24 H -0.166 1.166 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.228 4.228 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.242 0.758 44 H 0.257 0.743 45 H 0.197 0.803 46 H 0.087 0.913 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.443 19.114 2.613 19.346 hybrid contribution 0.883 -0.514 0.090 1.025 sum 2.325 18.600 2.703 18.938 Atomic orbital electron populations 1.21961 0.93723 1.01597 1.02650 1.20988 0.96665 0.96461 0.94389 1.21750 1.01091 0.93287 1.02889 1.21814 1.00757 0.98846 0.97511 1.21805 0.99816 0.78953 0.98808 1.47662 1.21298 1.07665 1.52591 1.22426 0.84460 1.03539 0.92272 1.22461 0.97773 0.89020 0.91493 1.86380 1.85537 1.39536 1.27574 1.19745 0.85188 0.85620 0.79628 1.90720 1.20384 1.82809 1.47876 1.20285 0.85263 0.86650 0.81090 1.90532 1.22917 1.81073 1.46133 1.42135 1.24757 1.06132 1.49858 1.17273 0.99834 0.85268 1.13643 1.24280 0.98844 0.93277 1.05568 1.78154 1.08357 1.12056 1.15298 1.44823 1.12108 1.07186 1.29097 1.20654 1.10913 0.82589 1.34210 0.84316 1.26845 0.94025 1.05246 0.95511 1.70373 1.09113 1.34967 1.30325 0.84547 0.79707 0.73903 0.78141 1.16569 1.19701 1.19697 1.21980 1.01706 0.87227 1.11911 0.91170 0.92020 0.93523 0.92587 0.91625 0.91213 0.95414 0.92126 0.93087 0.88084 0.90895 0.87717 0.86840 0.91249 0.95449 0.75766 0.74278 0.80306 0.91261 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.25 71.98 0.52 -1.74 16 2 C -0.08 -1.48 0.84 -52.18 -0.04 -1.52 16 3 C -0.13 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.13 -2.89 7.21 71.98 0.52 -2.37 16 5 C 0.13 2.59 4.58 86.38 0.40 2.99 16 6 N -0.56 -13.75 1.96 -823.53 -1.62 -15.36 16 7 C 0.09 2.14 4.06 86.38 0.35 2.49 16 8 C 0.07 1.58 6.80 71.98 0.49 2.07 16 9 O -0.58 -11.14 13.34 -148.98 -1.99 -13.12 16 10 C 0.52 15.63 5.94 87.22 0.52 16.15 16 11 O -0.54 -17.57 14.59 -3.32 -0.05 -17.62 16 12 C 0.48 16.97 7.59 87.22 0.66 17.63 16 13 O -0.53 -19.63 9.07 -3.40 -0.03 -19.66 16 14 N -0.58 -21.51 5.45 -305.34 -1.66 -23.17 16 15 C -0.05 -2.44 6.90 37.83 0.26 -2.18 16 16 C -0.04 -2.27 10.84 85.44 0.93 -1.35 16 17 N -0.31 -17.87 10.39 -56.43 -0.59 -18.46 16 18 N -0.16 -8.95 3.73 -189.98 -0.71 -9.66 16 19 C -0.35 -18.40 10.25 84.02 0.86 -17.54 16 20 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 21 C 0.00 -0.21 5.50 84.96 0.47 0.25 16 22 N -0.82 -46.17 11.81 21.66 0.26 -45.91 16 23 Si 1.02 37.97 29.55 68.60 2.03 40.00 16 24 H -0.24 -8.18 7.11 99.48 0.71 -7.48 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 27 C -0.08 -3.58 11.50 83.41 0.96 -2.62 16 28 H 0.07 0.92 8.07 -2.39 -0.02 0.90 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.05 0.88 6.10 -2.39 -0.01 0.86 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.03 0.72 6.20 -2.39 -0.01 0.71 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.21 7.83 -2.38 -0.02 1.20 16 37 H 0.10 1.80 7.80 -2.39 -0.02 1.78 16 38 H 0.07 1.67 7.37 -2.39 -0.02 1.66 16 39 H 0.10 1.89 6.37 -2.39 -0.02 1.87 16 40 H 0.11 3.02 5.39 -2.41 -0.01 3.01 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.03 0.75 7.17 -2.39 -0.02 0.74 16 43 H 0.39 4.53 9.12 -74.06 -0.68 3.86 16 44 H 0.42 13.41 8.31 -92.71 -0.77 12.64 16 45 H 0.18 8.86 5.92 -2.91 -0.02 8.85 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.18 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -70.18 377.63 2.72 -67.46 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.42 Total: 44.38 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.50 Total: 11.12 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.32 Total: -112.56 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -2.07 Total: -50.40 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -70.18 2.72 -67.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746394399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.122 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds