Wall clock time and date at job start Tue Mar 31 2020 21:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46933 * 2 1 4 4 C 1.53003 * 109.46933 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99868 * 274.92977 * 5 4 3 7 7 C 1.53004 * 109.47093 * 263.15848 * 6 5 4 8 8 O 1.42900 * 109.46900 * 65.00191 * 7 6 5 9 9 C 1.42902 * 113.99719 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00058 * 94.93348 * 5 4 3 11 11 O 1.21369 * 119.99946 * 3.78517 * 10 5 4 12 12 C 1.49302 * 120.00029 * 183.51270 * 10 5 4 13 13 O 1.21398 * 120.00197 * 354.57016 * 12 10 5 14 14 N 1.34781 * 119.99771 * 174.56783 * 12 10 5 15 15 C 1.40301 * 119.99905 * 180.02562 * 14 12 10 16 16 C 1.40727 * 126.09554 * 359.68955 * 15 14 12 17 17 N 1.30877 * 108.37224 * 179.87921 * 16 15 14 18 18 N 1.40064 * 108.43438 * 0.37695 * 17 16 15 19 19 C 1.37296 * 126.05499 * 179.73365 * 18 17 16 20 20 H 1.07999 * 120.00118 * 180.02562 * 19 18 17 21 21 C 1.39011 * 120.00144 * 0.02909 * 19 18 17 22 22 N 1.31284 * 119.99580 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47051 * 119.99683 * 23 21 19 26 26 H 1.48499 * 109.47434 * 240.00260 * 23 21 19 27 27 C 1.35781 * 126.09943 * 179.97438 * 15 14 12 28 28 H 1.09005 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47350 * 299.99960 * 1 2 3 30 30 H 1.08998 * 109.46994 * 60.00395 * 1 2 3 31 31 H 1.08999 * 109.46702 * 239.99658 * 2 1 3 32 32 H 1.09002 * 109.46801 * 120.00086 * 2 1 3 33 33 H 1.09000 * 109.47070 * 59.99869 * 3 2 1 34 34 H 1.08998 * 109.46958 * 299.99626 * 3 2 1 35 35 H 1.08995 * 109.46907 * 60.00115 * 4 3 2 36 36 H 1.09002 * 109.46801 * 300.00086 * 4 3 2 37 37 H 1.08995 * 109.47435 * 23.16052 * 6 5 4 38 38 H 1.09006 * 109.47134 * 143.16106 * 6 5 4 39 39 H 1.09000 * 109.47009 * 185.00320 * 7 6 5 40 40 H 1.08998 * 109.46976 * 305.00351 * 7 6 5 41 41 H 1.09004 * 109.47188 * 299.99643 * 9 8 7 42 42 H 1.08994 * 109.47155 * 59.99901 * 9 8 7 43 43 H 1.08997 * 109.46764 * 180.02562 * 9 8 7 44 44 H 0.96992 * 120.00478 * 359.97438 * 14 12 10 45 45 H 1.07997 * 125.81252 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00055 * 179.97438 * 22 21 19 47 47 H 1.07995 * 126.25346 * 359.93047 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2002 3.5499 -1.2644 7 6 5.6515 3.4649 -1.7412 8 8 5.9736 2.1067 -2.0471 9 6 7.3138 1.9161 -2.5049 10 6 4.3771 3.4263 1.1627 11 8 4.3253 2.8035 2.2031 12 6 4.7997 4.8582 1.1700 13 8 4.9515 5.4517 0.1219 14 7 5.0126 5.4920 2.3403 15 6 5.4092 6.8378 2.3472 16 6 5.6277 7.6436 1.2144 17 7 5.9831 8.8364 1.6189 18 7 6.0143 8.8381 3.0192 19 6 6.3468 9.9036 3.8188 20 1 6.3389 9.7956 4.8933 21 6 6.6937 11.1214 3.2453 22 7 6.7028 11.2529 1.9391 23 14 7.1454 12.5713 4.3330 24 1 7.0578 12.1664 5.7591 25 1 8.5317 13.0068 4.0269 26 1 6.2063 13.6930 4.0780 27 6 5.6559 7.5934 3.4480 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 3.5449 3.1060 -2.0138 38 1 3.9271 4.5947 -1.1159 39 1 5.7772 4.0780 -2.6336 40 1 6.3140 3.8272 -0.9552 41 1 7.4736 2.4969 -3.4133 42 1 8.0111 2.2464 -1.7350 43 1 7.4788 0.8595 -2.7159 44 1 4.8909 5.0180 3.1777 45 1 5.5181 7.3315 0.1863 46 1 6.9444 12.1028 1.5388 47 1 5.5817 7.2687 4.4753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746404349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:08 Heat of formation + Delta-G solvation = -27.255254 kcal Electronic energy + Delta-G solvation = -29604.926337 eV Core-core repulsion = 25404.553337 eV Total energy + Delta-G solvation = -4200.373000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75311 -39.60899 -38.08926 -37.87298 -36.41885 -34.91350 -34.03256 -33.16885 -30.49479 -30.33966 -28.87743 -27.99747 -26.34548 -25.62798 -24.54701 -23.30579 -22.39058 -21.31240 -20.97778 -19.60178 -19.37139 -17.79640 -17.33813 -16.85952 -16.27044 -16.09927 -15.60492 -15.58237 -15.49040 -15.10883 -14.96946 -14.65568 -14.29780 -14.03592 -13.72250 -13.62960 -13.22255 -13.11035 -13.03865 -12.76384 -12.56638 -12.21068 -11.94786 -11.76224 -11.59327 -11.46669 -11.44035 -11.32882 -11.27530 -11.20025 -10.99907 -10.80661 -10.71744 -10.54675 -10.29917 -9.70684 -9.26127 -8.98459 -8.89236 -8.68261 -8.15778 -6.80462 -6.63226 -4.30261 1.65923 2.56186 2.90493 3.02295 3.08001 3.30014 3.64167 3.68448 3.76247 3.85730 4.34147 4.51378 4.70763 4.74679 4.89332 4.94254 4.95664 5.08070 5.09242 5.17224 5.23636 5.32516 5.41510 5.45661 5.51605 5.54212 5.59814 5.61749 5.73674 5.78211 5.91733 5.96319 6.04795 6.13959 6.18004 6.33187 6.42465 6.73989 6.86308 6.92098 7.04760 7.14033 7.21924 7.71736 7.82748 8.09866 8.15712 8.46513 8.66969 9.28475 9.57106 10.32617 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002428 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.927661 B =11530.224697 C =12574.742805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.136 4.136 4 C 0.114 3.886 5 N -0.578 5.578 6 C 0.102 3.898 7 C 0.050 3.950 8 O -0.395 6.395 9 C 0.033 3.967 10 C 0.511 3.489 11 O -0.530 6.530 12 C 0.484 3.516 13 O -0.521 6.521 14 N -0.582 5.582 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 -17.447 -5.928 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.174 4.174 4 C -0.008 4.008 5 N -0.311 5.311 6 C -0.020 4.020 7 C -0.027 4.027 8 O -0.314 6.314 9 C -0.063 4.063 10 C 0.294 3.706 11 O -0.406 6.406 12 C 0.266 3.734 13 O -0.400 6.400 14 N -0.224 5.224 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.453 4.453 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.229 4.229 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.128 -16.152 -6.630 18.197 hybrid contribution 0.201 -0.278 1.081 1.134 sum -4.928 -16.430 -5.550 18.029 Atomic orbital electron populations 1.21761 0.95767 1.01480 1.01902 1.21433 0.95948 0.96322 1.02167 1.21999 0.95496 0.97289 1.02651 1.21616 0.93492 0.81704 1.03987 1.47681 1.63090 1.14072 1.06233 1.22271 0.95133 1.00477 0.84164 1.23011 0.97175 0.82651 0.99859 1.87826 1.29524 1.27497 1.86598 1.22683 0.83845 1.01746 0.98060 1.20290 0.78261 0.88020 0.83989 1.90717 1.52430 1.65957 1.31509 1.19694 0.81948 0.87152 0.84634 1.90526 1.51808 1.67049 1.30618 1.42192 1.61920 1.10146 1.08121 1.17253 1.21432 0.84252 0.94555 1.24137 1.06067 0.91250 0.98728 1.78260 1.25022 1.17831 0.88040 1.44567 1.35643 1.05834 1.04469 1.19973 1.47279 0.87854 0.90232 0.86400 1.25669 0.95766 0.99421 0.96297 1.70213 1.34343 1.25311 1.09513 0.85741 0.78645 0.79868 0.79786 1.18610 1.19866 1.19847 1.21314 1.16549 0.87879 0.97142 0.92818 0.92705 0.92778 0.91871 0.91796 0.91621 0.91710 0.89601 0.89653 0.90261 0.84945 0.92096 0.92320 0.94194 0.94204 0.90028 0.75625 0.80525 0.91410 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.14 -1.30 5.54 -26.73 -0.15 -1.44 16 4 C 0.11 1.25 5.46 -4.04 -0.02 1.23 16 5 N -0.58 -7.55 2.44 -174.25 -0.42 -7.97 16 6 C 0.10 1.22 5.40 -4.04 -0.02 1.19 16 7 C 0.05 0.62 5.68 37.16 0.21 0.83 16 8 O -0.40 -4.76 10.25 -35.23 -0.36 -5.12 16 9 C 0.03 0.32 11.01 101.05 1.11 1.43 16 10 C 0.51 8.04 7.67 -11.66 -0.09 7.96 16 11 O -0.53 -9.10 15.98 5.48 0.09 -9.01 16 12 C 0.48 8.53 7.59 -11.65 -0.09 8.44 16 13 O -0.52 -9.60 9.04 5.46 0.05 -9.55 16 14 N -0.58 -10.81 5.45 -10.46 -0.06 -10.87 16 15 C -0.07 -1.56 6.90 -83.92 -0.58 -2.13 16 16 C -0.03 -0.65 10.85 -17.02 -0.18 -0.84 16 17 N -0.26 -7.32 10.39 30.81 0.32 -7.00 16 18 N -0.14 -3.71 3.73 -11.40 -0.04 -3.75 16 19 C -0.32 -8.31 10.25 -14.82 -0.15 -8.46 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 22 N -0.77 -20.90 11.81 55.50 0.66 -20.24 16 23 Si 0.94 18.53 29.55 -169.99 -5.02 13.51 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 36 H 0.09 1.03 7.24 -51.93 -0.38 0.65 16 37 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.13 1.77 5.41 -51.93 -0.28 1.49 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.86 7.14 -51.93 -0.37 0.49 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.41 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.18 4.22 5.92 -52.49 -0.31 3.90 16 46 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 392.63 15.07 5.92 5.92 Total: -1.00 -31.28 392.63 -6.03 -37.31 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.11 Total: 11.34 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.04 Total: 5.45 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.45 Total: -49.84 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.22 Total: -23.68 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.28 -6.03 -37.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746404349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.054 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds