Wall clock time and date at job start Tue Mar 31 2020 21:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46933 * 2 1 4 4 C 1.53003 * 109.46933 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99868 * 274.92977 * 5 4 3 7 7 C 1.53004 * 109.47093 * 263.15848 * 6 5 4 8 8 O 1.42900 * 109.46900 * 65.00191 * 7 6 5 9 9 C 1.42902 * 113.99719 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00058 * 94.93348 * 5 4 3 11 11 O 1.21369 * 119.99946 * 3.78517 * 10 5 4 12 12 C 1.49302 * 120.00029 * 183.51270 * 10 5 4 13 13 O 1.21398 * 120.00197 * 354.57016 * 12 10 5 14 14 N 1.34781 * 119.99771 * 174.56783 * 12 10 5 15 15 C 1.40301 * 119.99905 * 180.02562 * 14 12 10 16 16 C 1.40727 * 126.09554 * 359.68955 * 15 14 12 17 17 N 1.30877 * 108.37224 * 179.87921 * 16 15 14 18 18 N 1.40064 * 108.43438 * 0.37695 * 17 16 15 19 19 C 1.37296 * 126.05499 * 179.73365 * 18 17 16 20 20 H 1.07999 * 120.00118 * 180.02562 * 19 18 17 21 21 C 1.39011 * 120.00144 * 0.02909 * 19 18 17 22 22 N 1.31284 * 119.99580 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47051 * 119.99683 * 23 21 19 26 26 H 1.48499 * 109.47434 * 240.00260 * 23 21 19 27 27 C 1.35781 * 126.09943 * 179.97438 * 15 14 12 28 28 H 1.09005 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47350 * 299.99960 * 1 2 3 30 30 H 1.08998 * 109.46994 * 60.00395 * 1 2 3 31 31 H 1.08999 * 109.46702 * 239.99658 * 2 1 3 32 32 H 1.09002 * 109.46801 * 120.00086 * 2 1 3 33 33 H 1.09000 * 109.47070 * 59.99869 * 3 2 1 34 34 H 1.08998 * 109.46958 * 299.99626 * 3 2 1 35 35 H 1.08995 * 109.46907 * 60.00115 * 4 3 2 36 36 H 1.09002 * 109.46801 * 300.00086 * 4 3 2 37 37 H 1.08995 * 109.47435 * 23.16052 * 6 5 4 38 38 H 1.09006 * 109.47134 * 143.16106 * 6 5 4 39 39 H 1.09000 * 109.47009 * 185.00320 * 7 6 5 40 40 H 1.08998 * 109.46976 * 305.00351 * 7 6 5 41 41 H 1.09004 * 109.47188 * 299.99643 * 9 8 7 42 42 H 1.08994 * 109.47155 * 59.99901 * 9 8 7 43 43 H 1.08997 * 109.46764 * 180.02562 * 9 8 7 44 44 H 0.96992 * 120.00478 * 359.97438 * 14 12 10 45 45 H 1.07997 * 125.81252 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00055 * 179.97438 * 22 21 19 47 47 H 1.07995 * 126.25346 * 359.93047 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2002 3.5499 -1.2644 7 6 5.6515 3.4649 -1.7412 8 8 5.9736 2.1067 -2.0471 9 6 7.3138 1.9161 -2.5049 10 6 4.3771 3.4263 1.1627 11 8 4.3253 2.8035 2.2031 12 6 4.7997 4.8582 1.1700 13 8 4.9515 5.4517 0.1219 14 7 5.0126 5.4920 2.3403 15 6 5.4092 6.8378 2.3472 16 6 5.6277 7.6436 1.2144 17 7 5.9831 8.8364 1.6189 18 7 6.0143 8.8381 3.0192 19 6 6.3468 9.9036 3.8188 20 1 6.3389 9.7956 4.8933 21 6 6.6937 11.1214 3.2453 22 7 6.7028 11.2529 1.9391 23 14 7.1454 12.5713 4.3330 24 1 7.0578 12.1664 5.7591 25 1 8.5317 13.0068 4.0269 26 1 6.2063 13.6930 4.0780 27 6 5.6559 7.5934 3.4480 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 3.5449 3.1060 -2.0138 38 1 3.9271 4.5947 -1.1159 39 1 5.7772 4.0780 -2.6336 40 1 6.3140 3.8272 -0.9552 41 1 7.4736 2.4969 -3.4133 42 1 8.0111 2.2464 -1.7350 43 1 7.4788 0.8595 -2.7159 44 1 4.8909 5.0180 3.1777 45 1 5.5181 7.3315 0.1863 46 1 6.9444 12.1028 1.5388 47 1 5.5817 7.2687 4.4753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746404349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:07 Heat of formation + Delta-G solvation = -47.620688 kcal Electronic energy + Delta-G solvation = -29605.809448 eV Core-core repulsion = 25404.553337 eV Total energy + Delta-G solvation = -4201.256112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17746 -41.31533 -39.50317 -38.90915 -37.45125 -36.15991 -35.35580 -34.84914 -32.28665 -31.36541 -30.07862 -29.54611 -27.28847 -27.11864 -25.95789 -24.28412 -23.61283 -22.84736 -22.01907 -21.34551 -20.75751 -19.42334 -18.74059 -18.03507 -17.48441 -17.35220 -17.19853 -16.75832 -16.71729 -16.25656 -16.08923 -15.85505 -15.59386 -15.42532 -15.06875 -14.98680 -14.80818 -14.41590 -14.01228 -13.73004 -13.53281 -13.51341 -13.28380 -13.06772 -12.96063 -12.88910 -12.79375 -12.36804 -12.22943 -12.21304 -12.05895 -12.03307 -11.91735 -11.84145 -11.43250 -11.07324 -10.86035 -10.64114 -10.29325 -10.13239 -9.82615 -8.60825 -8.49038 -6.25950 0.28510 1.27887 1.28728 1.41840 1.59451 1.71597 2.03613 2.10432 2.43365 2.53869 2.82329 2.88628 3.07535 3.41620 3.95469 3.97833 4.12164 4.16952 4.22722 4.39111 4.40309 4.42734 4.52236 4.53135 4.57530 4.65808 4.69041 4.76329 4.82491 4.84425 4.92216 4.97138 4.98168 4.99177 5.08407 5.24489 5.27040 5.34549 5.37027 5.42207 5.50499 5.90561 5.95172 6.19408 6.23261 6.41533 6.67272 6.76838 7.07419 7.41458 7.64098 8.50301 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002428 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.927661 B =11530.224697 C =12574.742805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.115 3.885 5 N -0.568 5.568 6 C 0.101 3.899 7 C 0.055 3.945 8 O -0.403 6.403 9 C 0.028 3.972 10 C 0.515 3.485 11 O -0.546 6.546 12 C 0.486 3.514 13 O -0.527 6.527 14 N -0.584 5.584 15 C -0.054 4.054 16 C -0.044 4.044 17 N -0.307 5.307 18 N -0.164 5.164 19 C -0.352 4.352 20 H 0.140 0.860 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.018 2.982 24 H -0.243 1.243 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.077 4.077 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.102 0.898 44 H 0.421 0.579 45 H 0.181 0.819 46 H 0.278 0.722 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -19.023 -5.683 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.006 4.006 5 N -0.299 5.299 6 C -0.020 4.020 7 C -0.022 4.022 8 O -0.322 6.322 9 C -0.069 4.069 10 C 0.297 3.703 11 O -0.424 6.424 12 C 0.269 3.731 13 O -0.405 6.405 14 N -0.228 5.228 15 C -0.160 4.160 16 C -0.219 4.219 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.483 4.483 20 H 0.157 0.843 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.837 3.163 24 H -0.165 1.165 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.228 4.228 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.120 0.880 44 H 0.258 0.742 45 H 0.197 0.803 46 H 0.087 0.913 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.700 -17.785 -6.404 19.743 hybrid contribution 0.332 -0.018 0.873 0.934 sum -5.368 -17.803 -5.531 19.400 Atomic orbital electron populations 1.21761 0.95296 1.02134 1.01725 1.21419 0.96314 0.95060 1.02743 1.21938 0.94166 0.98482 1.02148 1.21788 0.94480 0.80124 1.04246 1.47804 1.61560 1.14812 1.05709 1.22301 0.95642 0.99908 0.84188 1.22888 0.96626 0.83249 0.99470 1.87797 1.30803 1.26899 1.86727 1.22861 0.82529 1.03312 0.98153 1.19861 0.78769 0.86930 0.84722 1.90715 1.53616 1.65870 1.32182 1.20189 0.80759 0.88053 0.84121 1.90536 1.51385 1.67638 1.30967 1.42133 1.62699 1.08778 1.09228 1.17273 1.19626 0.85630 0.93517 1.24289 1.06712 0.91346 0.99602 1.78154 1.26633 1.19501 0.89590 1.44824 1.37102 1.07180 1.04117 1.20655 1.48007 0.88361 0.91318 0.84291 1.26851 0.94897 1.02294 0.97637 1.70373 1.36261 1.26289 1.11857 0.84546 0.77954 0.75341 0.78450 1.16547 1.19734 1.19684 1.21986 1.14933 0.86907 0.98956 0.91782 0.93455 0.92416 0.90521 0.92011 0.93443 0.90872 0.87973 0.90672 0.87282 0.86384 0.90964 0.95092 0.93107 0.95027 0.87962 0.74228 0.80263 0.91263 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.40 16 3 C -0.13 -2.21 5.54 30.59 0.17 -2.04 16 4 C 0.11 2.30 5.46 86.38 0.47 2.77 16 5 N -0.57 -14.06 2.44 -823.56 -2.01 -16.07 16 6 C 0.10 2.27 5.40 86.38 0.47 2.74 16 7 C 0.06 1.31 5.68 71.98 0.41 1.72 16 8 O -0.40 -8.94 10.25 -148.98 -1.53 -10.47 16 9 C 0.03 0.48 11.01 113.37 1.25 1.73 16 10 C 0.51 15.84 7.67 87.22 0.67 16.51 16 11 O -0.55 -18.31 15.98 -3.31 -0.05 -18.37 16 12 C 0.49 17.05 7.59 87.22 0.66 17.71 16 13 O -0.53 -19.55 9.04 -3.39 -0.03 -19.58 16 14 N -0.58 -21.49 5.45 -305.33 -1.66 -23.15 16 15 C -0.05 -2.45 6.90 37.82 0.26 -2.19 16 16 C -0.04 -2.26 10.85 85.44 0.93 -1.33 16 17 N -0.31 -17.87 10.39 -56.43 -0.59 -18.46 16 18 N -0.16 -8.95 3.73 -189.98 -0.71 -9.66 16 19 C -0.35 -18.38 10.25 84.02 0.86 -17.52 16 20 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 21 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 22 N -0.82 -46.18 11.81 21.67 0.26 -45.92 16 23 Si 1.02 37.97 29.55 68.60 2.03 40.00 16 24 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 27 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.76 7.71 -2.39 -0.02 1.75 16 36 H 0.07 1.70 7.24 -2.39 -0.02 1.69 16 37 H 0.11 1.83 8.02 -2.39 -0.02 1.81 16 38 H 0.12 3.07 5.41 -2.39 -0.01 3.05 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 0.91 7.14 -2.39 -0.02 0.89 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.42 13.39 8.31 -92.71 -0.77 12.62 16 45 H 0.18 8.87 5.92 -2.91 -0.02 8.85 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.18 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -69.61 392.63 4.39 -65.22 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.22 Total: 41.33 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 8.47 Total: 15.12 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.71 Total: -113.25 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -1.61 Total: -48.41 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -69.61 4.39 -65.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746404349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.600 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds