Wall clock time and date at job start Tue Mar 31 2020 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 7 7 C 1.52997 * 109.47152 * 300.00639 * 6 3 2 8 8 O 1.42899 * 109.46691 * 60.00413 * 6 3 2 9 9 C 1.52999 * 109.47304 * 179.97438 * 6 3 2 10 10 N 1.46501 * 109.47174 * 179.97438 * 9 6 3 11 11 C 1.34774 * 119.99899 * 180.02562 * 10 9 6 12 12 O 1.21357 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.49316 * 119.99463 * 180.02562 * 11 10 9 14 14 O 1.21403 * 120.00099 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99463 * 180.02562 * 13 11 10 16 16 C 1.40293 * 119.99689 * 179.97438 * 15 13 11 17 17 C 1.40721 * 126.10210 * 359.69405 * 16 15 13 18 18 N 1.30877 * 108.37507 * 179.81085 * 17 16 15 19 19 N 1.40061 * 108.43844 * 0.44794 * 18 17 16 20 20 C 1.37292 * 126.05543 * 179.69393 * 19 18 17 21 21 H 1.08002 * 119.99728 * 180.02562 * 20 19 18 22 22 C 1.39002 * 120.00315 * 0.02562 * 20 19 18 23 23 N 1.31284 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00282 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47392 * 119.99846 * 24 22 20 27 27 H 1.48507 * 109.46748 * 240.00021 * 24 22 20 28 28 C 1.35790 * 126.10006 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 35 35 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 36 36 H 1.09001 * 109.46897 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47001 * 59.99405 * 7 6 3 38 38 H 1.08999 * 109.46883 * 179.97438 * 7 6 3 39 39 H 1.08997 * 109.47163 * 299.99580 * 7 6 3 40 40 H 0.96707 * 114.00475 * 59.99813 * 8 6 3 41 41 H 1.09001 * 109.47622 * 300.00794 * 9 6 3 42 42 H 1.09007 * 109.46705 * 60.00661 * 9 6 3 43 43 H 0.97006 * 119.99928 * 0.02562 * 10 9 6 44 44 H 0.97006 * 120.00172 * 0.02562 * 15 13 11 45 45 H 1.08001 * 125.81100 * 359.97438 * 17 16 15 46 46 H 0.97006 * 119.99800 * 180.02562 * 23 22 20 47 47 H 1.08004 * 126.24933 * 359.96551 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1258 7 6 3.9696 0.7603 1.4330 8 8 4.1346 0.7378 -0.9779 9 6 4.0749 2.8869 0.1251 10 7 5.5349 2.8887 0.2462 11 6 6.2078 4.0562 0.2677 12 8 5.6043 5.1060 0.1874 13 6 7.6959 4.0579 0.3905 14 8 8.2995 3.0077 0.4714 15 7 8.3688 5.2255 0.4126 16 6 9.7669 5.2272 0.5285 17 6 10.5914 4.0919 0.6358 18 7 11.8347 4.4915 0.7211 19 7 11.8537 5.8914 0.6824 20 6 12.9707 6.6866 0.7525 21 1 12.8717 7.7614 0.7137 22 6 14.2290 6.1086 0.8733 23 7 14.3493 4.8021 0.9209 24 14 15.7487 7.1906 0.9694 25 1 15.3456 8.6179 0.8953 26 1 16.4539 6.9409 2.2521 27 1 16.6548 6.8731 -0.1636 28 6 10.5655 6.3249 0.5635 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0698 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 3.6063 -0.2674 1.4330 38 1 5.0560 0.7613 1.5224 39 1 3.5350 1.2992 2.2749 40 1 3.9190 1.1166 -1.8412 41 1 3.7865 3.3739 -0.8064 42 1 3.6403 3.4262 0.9668 43 1 6.0172 2.0496 0.3108 44 1 7.8863 6.0646 0.3491 45 1 10.2555 3.0654 0.6435 46 1 15.2274 4.3987 1.0056 47 1 10.2403 7.3532 0.5068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746415128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:06 Heat of formation + Delta-G solvation = -47.366012 kcal Electronic energy + Delta-G solvation = -28970.526186 eV Core-core repulsion = 24769.281118 eV Total energy + Delta-G solvation = -4201.245068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66396 -39.89903 -39.21244 -37.83478 -35.35708 -34.80101 -34.06075 -33.14980 -31.41424 -30.32060 -29.95351 -28.17387 -27.20933 -25.20992 -24.90784 -23.65082 -21.71696 -21.01288 -20.51195 -19.95235 -19.46290 -18.36535 -17.45271 -17.22856 -16.24907 -15.99124 -15.64683 -15.50682 -15.34977 -15.07043 -14.95594 -14.65530 -14.19197 -13.94036 -13.90985 -13.46762 -13.34448 -13.05891 -12.98702 -12.71996 -12.64878 -12.47192 -12.14154 -12.09206 -11.90484 -11.74355 -11.57077 -11.41854 -11.30438 -11.23438 -11.04283 -10.86503 -10.66864 -10.52810 -10.29235 -10.19406 -9.30025 -9.23193 -9.12141 -8.87131 -8.12530 -6.77594 -6.60382 -4.27610 1.65963 2.57193 2.92578 3.04060 3.09896 3.33062 3.70885 3.72669 3.82873 4.02939 4.14875 4.28041 4.35658 4.37770 4.57258 4.61955 4.76973 4.97009 4.98320 4.99939 5.03157 5.12162 5.18902 5.28727 5.38222 5.43173 5.48424 5.55602 5.59466 5.64002 5.66172 5.87138 5.98164 5.99693 6.16867 6.20391 6.36412 6.75936 6.89328 6.92379 7.16505 7.21789 7.28737 7.76807 7.86087 8.10587 8.18865 8.49264 8.69925 9.31576 9.60271 10.35489 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.001817 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.976111 B =15406.190301 C =15819.493733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.114 4.114 4 H 0.081 0.919 5 C -0.161 4.161 6 C 0.125 3.875 7 C -0.146 4.146 8 O -0.550 6.550 9 C 0.091 3.909 10 N -0.697 5.697 11 C 0.514 3.486 12 O -0.531 6.531 13 C 0.483 3.517 14 O -0.521 6.521 15 N -0.584 5.584 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.322 4.322 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.376 0.624 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.417 0.583 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.050 -5.748 -1.930 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.133 4.133 4 H 0.100 0.900 5 C -0.218 4.218 6 C 0.084 3.916 7 C -0.203 4.203 8 O -0.356 6.356 9 C -0.033 4.033 10 N -0.352 5.352 11 C 0.295 3.705 12 O -0.408 6.408 13 C 0.264 3.736 14 O -0.399 6.399 15 N -0.226 5.226 16 C -0.175 4.175 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.224 0.776 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.255 0.745 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.422 -6.663 -1.324 23.428 hybrid contribution -0.585 1.274 -0.495 1.487 sum -23.007 -5.389 -1.819 23.700 Atomic orbital electron populations 1.21842 0.95957 1.01593 1.01785 1.21541 0.95431 0.95448 1.02944 1.21757 0.94422 0.97685 0.99415 0.90019 1.22024 1.02331 1.00597 0.96843 1.21462 0.91854 0.89663 0.88628 1.21856 1.02871 1.01530 0.94074 1.86592 1.76106 1.56430 1.16509 1.22207 0.80306 0.97538 1.03281 1.45629 1.07240 1.09399 1.72915 1.20316 0.88787 0.84131 0.77239 1.90724 1.70162 1.31256 1.48648 1.19634 0.87316 0.84809 0.81839 1.90663 1.68678 1.31030 1.49491 1.42142 1.05522 1.08108 1.66864 1.17259 0.81011 0.94594 1.24675 1.24151 0.90083 0.98775 1.07196 1.78262 1.16989 0.88112 1.25750 1.44569 1.03263 1.04467 1.38236 1.19974 0.82441 0.90319 1.52690 0.86386 1.25670 0.99813 0.96265 0.95401 1.70221 1.24980 1.09399 1.34771 0.85739 0.79994 0.79759 0.78523 1.18620 1.19862 1.19864 1.21304 0.85343 0.97094 1.19138 0.92857 0.92811 0.92586 0.91466 0.91292 0.92334 0.91687 0.92009 0.90962 0.91352 0.90854 0.77554 0.90534 0.90272 0.74456 0.75624 0.80549 0.91403 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.67 4.97 -26.73 -0.13 -0.80 16 3 C -0.11 -0.64 1.81 -90.62 -0.16 -0.81 16 4 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 5 C -0.16 -0.81 8.29 37.16 0.31 -0.50 16 6 C 0.13 0.91 0.48 -90.62 -0.04 0.87 16 7 C -0.15 -1.11 8.33 37.16 0.31 -0.80 16 8 O -0.55 -4.50 12.10 -35.23 -0.43 -4.92 16 9 C 0.09 0.82 4.43 -4.04 -0.02 0.80 16 10 N -0.70 -8.36 5.14 -60.77 -0.31 -8.68 16 11 C 0.51 7.83 7.88 -11.65 -0.09 7.74 16 12 O -0.53 -8.74 16.47 5.49 0.09 -8.65 16 13 C 0.48 8.86 7.85 -11.65 -0.09 8.77 16 14 O -0.52 -10.72 13.62 5.45 0.07 -10.64 16 15 N -0.58 -11.13 5.45 -10.45 -0.06 -11.18 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 18 N -0.26 -7.51 10.39 30.81 0.32 -7.19 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 20 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 21 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.23 11.81 55.50 0.66 -20.58 16 24 Si 0.94 18.75 29.55 -169.99 -5.02 13.72 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 32 H 0.07 0.40 6.17 -51.93 -0.32 0.08 16 33 H 0.07 0.44 7.84 -51.93 -0.41 0.04 16 34 H 0.06 0.27 6.78 -51.93 -0.35 -0.09 16 35 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 36 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 37 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 38 H 0.07 0.61 6.86 -51.93 -0.36 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.38 2.20 7.33 45.56 0.33 2.53 16 41 H 0.08 0.67 6.43 -51.93 -0.33 0.34 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.42 5.06 6.66 -40.82 -0.27 4.79 16 44 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 45 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -33.00 381.36 -5.52 -38.52 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.78 Total: 15.43 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.77 Total: 2.25 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.56 Total: -51.45 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.26 Total: -24.21 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.00 -5.52 -38.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746415128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.842 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds