Wall clock time and date at job start Tue Mar 31 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 7 7 C 1.52997 * 109.47152 * 300.00639 * 6 3 2 8 8 O 1.42899 * 109.46691 * 60.00413 * 6 3 2 9 9 C 1.52999 * 109.47304 * 179.97438 * 6 3 2 10 10 N 1.46501 * 109.47174 * 179.97438 * 9 6 3 11 11 C 1.34774 * 119.99899 * 180.02562 * 10 9 6 12 12 O 1.21357 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.49316 * 119.99463 * 180.02562 * 11 10 9 14 14 O 1.21403 * 120.00099 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99463 * 180.02562 * 13 11 10 16 16 C 1.40293 * 119.99689 * 179.97438 * 15 13 11 17 17 C 1.40721 * 126.10210 * 359.69405 * 16 15 13 18 18 N 1.30877 * 108.37507 * 179.81085 * 17 16 15 19 19 N 1.40061 * 108.43844 * 0.44794 * 18 17 16 20 20 C 1.37292 * 126.05543 * 179.69393 * 19 18 17 21 21 H 1.08002 * 119.99728 * 180.02562 * 20 19 18 22 22 C 1.39002 * 120.00315 * 0.02562 * 20 19 18 23 23 N 1.31284 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00282 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47392 * 119.99846 * 24 22 20 27 27 H 1.48507 * 109.46748 * 240.00021 * 24 22 20 28 28 C 1.35790 * 126.10006 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 35 35 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 36 36 H 1.09001 * 109.46897 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47001 * 59.99405 * 7 6 3 38 38 H 1.08999 * 109.46883 * 179.97438 * 7 6 3 39 39 H 1.08997 * 109.47163 * 299.99580 * 7 6 3 40 40 H 0.96707 * 114.00475 * 59.99813 * 8 6 3 41 41 H 1.09001 * 109.47622 * 300.00794 * 9 6 3 42 42 H 1.09007 * 109.46705 * 60.00661 * 9 6 3 43 43 H 0.97006 * 119.99928 * 0.02562 * 10 9 6 44 44 H 0.97006 * 120.00172 * 0.02562 * 15 13 11 45 45 H 1.08001 * 125.81100 * 359.97438 * 17 16 15 46 46 H 0.97006 * 119.99800 * 180.02562 * 23 22 20 47 47 H 1.08004 * 126.24933 * 359.96551 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1258 7 6 3.9696 0.7603 1.4330 8 8 4.1346 0.7378 -0.9779 9 6 4.0749 2.8869 0.1251 10 7 5.5349 2.8887 0.2462 11 6 6.2078 4.0562 0.2677 12 8 5.6043 5.1060 0.1874 13 6 7.6959 4.0579 0.3905 14 8 8.2995 3.0077 0.4714 15 7 8.3688 5.2255 0.4126 16 6 9.7669 5.2272 0.5285 17 6 10.5914 4.0919 0.6358 18 7 11.8347 4.4915 0.7211 19 7 11.8537 5.8914 0.6824 20 6 12.9707 6.6866 0.7525 21 1 12.8717 7.7614 0.7137 22 6 14.2290 6.1086 0.8733 23 7 14.3493 4.8021 0.9209 24 14 15.7487 7.1906 0.9694 25 1 15.3456 8.6179 0.8953 26 1 16.4539 6.9409 2.2521 27 1 16.6548 6.8731 -0.1636 28 6 10.5655 6.3249 0.5635 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0698 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 3.6063 -0.2674 1.4330 38 1 5.0560 0.7613 1.5224 39 1 3.5350 1.2992 2.2749 40 1 3.9190 1.1166 -1.8412 41 1 3.7865 3.3739 -0.8064 42 1 3.6403 3.4262 0.9668 43 1 6.0172 2.0496 0.3108 44 1 7.8863 6.0646 0.3491 45 1 10.2555 3.0654 0.6435 46 1 15.2274 4.3987 1.0056 47 1 10.2403 7.3532 0.5068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746415128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:05 Heat of formation + Delta-G solvation = -72.860895 kcal Electronic energy + Delta-G solvation = -28971.631728 eV Core-core repulsion = 24769.281118 eV Total energy + Delta-G solvation = -4202.350609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06075 -41.30642 -40.34091 -39.24800 -36.43283 -35.77475 -35.35117 -34.87637 -32.30824 -32.09506 -30.41252 -29.93640 -28.24150 -26.95104 -25.40059 -24.98821 -22.94282 -22.34745 -21.75156 -21.26832 -20.62722 -19.75733 -19.18170 -18.03003 -17.49505 -17.40823 -17.11328 -16.82237 -16.34333 -16.10919 -15.81877 -15.79824 -15.50457 -15.31779 -14.95608 -14.86115 -14.71751 -14.42459 -13.85298 -13.52368 -13.39095 -13.35336 -13.29455 -13.00091 -12.95196 -12.94282 -12.67212 -12.54987 -12.49578 -12.37587 -12.02537 -11.99504 -11.94882 -11.49614 -11.17051 -11.08780 -10.89096 -10.84673 -10.51953 -10.31534 -10.14655 -8.62894 -8.49309 -6.27161 0.27717 1.28312 1.29130 1.42226 1.60241 1.71873 2.03440 2.11459 2.52781 2.56769 2.91771 3.07370 3.29746 3.50516 3.54531 3.74881 3.80328 4.06799 4.26849 4.39249 4.49638 4.51625 4.53507 4.57433 4.69437 4.76710 4.79224 4.89137 4.94496 4.95508 4.97963 5.05747 5.12161 5.18731 5.19934 5.21270 5.23091 5.30245 5.36783 5.53587 5.57820 5.89659 5.98605 6.23890 6.46515 6.66506 6.75122 6.81133 7.06875 7.41005 7.62334 8.50155 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.001817 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.976111 B =15406.190301 C =15819.493733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.107 4.107 4 H 0.088 0.912 5 C -0.161 4.161 6 C 0.132 3.868 7 C -0.150 4.150 8 O -0.564 6.564 9 C 0.087 3.913 10 N -0.681 5.681 11 C 0.524 3.476 12 O -0.541 6.541 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.048 4.048 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.353 4.353 21 H 0.143 0.857 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.074 4.074 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.386 0.614 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.418 0.582 44 H 0.423 0.577 45 H 0.175 0.825 46 H 0.278 0.722 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.807 -4.263 -2.141 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.126 4.126 4 H 0.106 0.894 5 C -0.218 4.218 6 C 0.091 3.909 7 C -0.207 4.207 8 O -0.372 6.372 9 C -0.035 4.035 10 N -0.334 5.334 11 C 0.304 3.696 12 O -0.419 6.419 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.227 5.227 16 C -0.164 4.164 17 C -0.224 4.224 18 N -0.140 5.140 19 N 0.069 4.931 20 C -0.484 4.484 21 H 0.160 0.840 22 C -0.217 4.217 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.225 4.225 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.256 0.744 44 H 0.261 0.739 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -24.253 -5.181 -1.547 24.848 hybrid contribution -0.249 0.708 -0.448 0.875 sum -24.501 -4.473 -1.996 24.986 Atomic orbital electron populations 1.21827 0.95290 1.01766 1.02124 1.21510 0.95966 0.95269 1.02419 1.21701 0.92879 0.97869 1.00140 0.89354 1.22029 1.02804 1.00389 0.96559 1.21431 0.92858 0.88282 0.88313 1.21909 1.01860 1.02165 0.94779 1.86580 1.76475 1.56837 1.17304 1.22492 0.78000 0.99065 1.03987 1.45665 1.08587 1.08267 1.70915 1.19623 0.86993 0.84961 0.78044 1.90731 1.69670 1.31660 1.49794 1.20321 0.88919 0.84065 0.80083 1.90655 1.69730 1.31927 1.49905 1.42078 1.03881 1.09312 1.67403 1.17304 0.82854 0.93501 1.22701 1.24239 0.90328 0.99545 1.08275 1.78159 1.18524 0.89822 1.27449 1.44848 1.04707 1.04037 1.39505 1.20713 0.82868 0.91497 1.53356 0.84017 1.26893 1.03203 0.97585 0.94056 1.70387 1.25960 1.11860 1.36702 0.84521 0.74881 0.78484 0.78230 1.16359 1.19719 1.19732 1.22006 0.84288 0.98955 1.17258 0.92545 0.92781 0.92197 0.91807 0.92040 0.91880 0.91066 0.92178 0.90550 0.92980 0.89712 0.76429 0.89668 0.89596 0.74414 0.73882 0.80859 0.91240 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 71.98 0.70 -0.56 16 2 C -0.11 -1.12 4.97 30.59 0.15 -0.97 16 3 C -0.11 -0.99 1.81 -10.79 -0.02 -1.01 16 4 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 5 C -0.16 -1.26 8.29 71.98 0.60 -0.67 16 6 C 0.13 1.70 0.48 -10.79 -0.01 1.69 16 7 C -0.15 -2.08 8.33 71.98 0.60 -1.49 16 8 O -0.56 -8.44 12.10 -148.98 -1.80 -10.24 16 9 C 0.09 1.40 4.43 86.38 0.38 1.78 16 10 N -0.68 -15.39 5.14 -464.55 -2.39 -17.77 16 11 C 0.52 15.21 7.88 87.23 0.69 15.89 16 12 O -0.54 -16.67 16.47 -3.27 -0.05 -16.73 16 13 C 0.48 17.46 7.85 87.23 0.69 18.15 16 14 O -0.54 -22.53 13.62 -3.41 -0.05 -22.58 16 15 N -0.58 -21.64 5.45 -305.33 -1.66 -23.30 16 16 C -0.06 -2.66 6.90 37.82 0.26 -2.40 16 17 C -0.05 -2.61 10.85 85.44 0.93 -1.68 16 18 N -0.31 -18.39 10.39 -56.43 -0.59 -18.98 16 19 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 20 C -0.35 -18.57 10.25 84.02 0.86 -17.71 16 21 H 0.14 6.46 7.83 -2.91 -0.02 6.43 16 22 C -0.01 -0.27 5.50 84.96 0.47 0.19 16 23 N -0.82 -46.94 11.81 21.66 0.26 -46.68 16 24 Si 1.02 38.20 29.55 68.60 2.03 40.23 16 25 H -0.24 -8.08 7.11 99.48 0.71 -7.37 16 26 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 28 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 6.57 -2.38 -0.02 0.43 16 32 H 0.06 0.67 6.17 -2.39 -0.01 0.66 16 33 H 0.06 0.70 7.84 -2.39 -0.02 0.69 16 34 H 0.06 0.44 6.78 -2.39 -0.02 0.42 16 35 H 0.07 0.49 6.56 -2.39 -0.02 0.48 16 36 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 37 H 0.08 1.00 6.32 -2.39 -0.02 0.98 16 38 H 0.05 0.89 6.86 -2.39 -0.02 0.88 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.39 3.89 7.33 -74.05 -0.54 3.34 16 41 H 0.09 1.29 6.43 -2.39 -0.02 1.28 16 42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.42 9.76 6.66 -92.70 -0.62 9.14 16 44 H 0.42 13.17 8.29 -92.70 -0.77 12.40 16 45 H 0.17 9.20 5.92 -2.91 -0.02 9.18 16 46 H 0.28 14.52 8.31 -92.70 -0.77 13.75 16 47 H 0.19 6.97 8.06 -2.91 -0.02 6.94 16 Total: -1.00 -73.12 381.36 1.40 -71.72 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.88 Total: 45.31 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 7.25 Total: 8.74 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -5.09 Total: -116.45 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -1.90 Total: -49.54 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -73.12 1.40 -71.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746415128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.138 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds