Wall clock time and date at job start Tue Mar 31 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47535 * 54.99596 * 3 2 1 5 5 C 1.53006 * 109.47112 * 294.99602 * 3 2 1 6 6 C 1.52999 * 109.47327 * 174.99940 * 3 2 1 7 7 C 1.53003 * 109.47192 * 59.99836 * 6 3 2 8 8 O 1.42898 * 109.47201 * 299.99725 * 6 3 2 9 9 C 1.52998 * 109.47301 * 179.97438 * 6 3 2 10 10 N 1.46504 * 109.47125 * 184.99973 * 9 6 3 11 11 C 1.34774 * 120.00033 * 179.97438 * 10 9 6 12 12 O 1.21367 * 120.00007 * 359.72781 * 11 10 9 13 13 C 1.49305 * 120.00269 * 180.02562 * 11 10 9 14 14 O 1.21412 * 119.99515 * 359.72763 * 13 11 10 15 15 N 1.34771 * 120.00428 * 179.72992 * 13 11 10 16 16 C 1.40292 * 120.00399 * 180.02562 * 15 13 11 17 17 C 1.40730 * 126.09891 * 359.68865 * 16 15 13 18 18 N 1.30873 * 108.37436 * 179.87916 * 17 16 15 19 19 N 1.40061 * 108.44110 * 0.37750 * 18 17 16 20 20 C 1.37292 * 126.05738 * 179.73642 * 19 18 17 21 21 H 1.07997 * 119.99752 * 174.16079 * 20 19 18 22 22 C 1.39005 * 120.00008 * 354.15875 * 20 19 18 23 23 N 1.31282 * 120.00251 * 5.93760 * 22 20 19 24 24 Si 1.86804 * 119.99861 * 185.94147 * 22 20 19 25 25 H 1.48499 * 109.47130 * 94.97760 * 24 22 20 26 26 H 1.48502 * 109.46473 * 214.97863 * 24 22 20 27 27 H 1.48501 * 109.47099 * 334.97407 * 24 22 20 28 28 C 1.35784 * 126.10396 * 179.97438 * 16 15 13 29 29 H 1.09007 * 109.47299 * 59.99977 * 1 2 3 30 30 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47059 * 300.00360 * 1 2 3 32 32 H 1.08995 * 109.47294 * 239.99838 * 2 1 3 33 33 H 1.08999 * 109.46900 * 119.99539 * 2 1 3 34 34 H 1.09003 * 109.46429 * 60.00188 * 5 3 2 35 35 H 1.08993 * 109.47452 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47149 * 300.00824 * 5 3 2 37 37 H 1.08993 * 109.47321 * 180.02562 * 7 6 3 38 38 H 1.09006 * 109.46818 * 300.00246 * 7 6 3 39 39 H 1.09002 * 109.47155 * 59.99606 * 7 6 3 40 40 H 0.96700 * 114.00263 * 299.99839 * 8 6 3 41 41 H 1.08997 * 109.47491 * 65.00309 * 9 6 3 42 42 H 1.08999 * 109.47149 * 304.99843 * 9 6 3 43 43 H 0.96998 * 119.99857 * 0.02562 * 10 9 6 44 44 H 0.97002 * 120.00002 * 359.97438 * 15 13 11 45 45 H 1.08005 * 125.80917 * 0.03608 * 17 16 15 46 46 H 0.96996 * 120.00478 * 180.02562 * 23 22 20 47 47 H 1.08003 * 126.25246 * 359.95085 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.1749 0.6877 -1.0559 8 8 3.9428 0.8055 1.3468 9 6 4.0748 2.8868 0.1251 10 7 5.5399 2.8867 0.1251 11 6 6.2138 4.0539 0.1241 12 8 5.6070 5.1050 0.1181 13 6 7.7068 4.0539 0.1235 14 8 8.3138 3.0024 0.1290 15 7 8.3808 5.2210 0.1170 16 6 9.7837 5.2210 0.1159 17 6 10.6129 4.0839 0.1273 18 7 11.8595 4.4823 0.1195 19 7 11.8770 5.8828 0.1117 20 6 12.9969 6.6769 0.1074 21 1 12.8992 7.7476 0.0062 22 6 14.2566 6.1027 0.2333 23 7 14.3849 4.7962 0.2390 24 14 15.7669 7.1902 0.3944 25 1 16.0952 7.3717 1.8312 26 1 16.9138 6.5501 -0.2985 27 1 15.4922 8.5132 -0.2216 28 6 10.5838 6.3180 0.1091 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 1.9982 3.1543 -1.3073 36 1 2.0698 1.5874 -2.1492 37 1 5.2611 0.6886 -0.9661 38 1 3.8115 -0.3400 -1.0558 39 1 3.8865 1.1749 -1.9873 40 1 3.5907 1.2327 2.1396 41 1 3.7116 3.4011 1.0148 42 1 3.7116 3.4002 -0.7651 43 1 6.0248 2.0467 0.1251 44 1 7.8958 6.0611 0.1123 45 1 10.2775 3.0573 0.1379 46 1 15.2638 4.3955 0.3273 47 1 10.2565 7.3472 0.1029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746415129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:11 Heat of formation + Delta-G solvation = -46.075551 kcal Electronic energy + Delta-G solvation = -28973.439577 eV Core-core repulsion = 24772.250468 eV Total energy + Delta-G solvation = -4201.189109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.66777 -39.88884 -39.19769 -37.83121 -35.49321 -34.93097 -34.07883 -33.15347 -31.58658 -30.32331 -29.01547 -28.19610 -27.35358 -25.50269 -25.14142 -23.66631 -21.79935 -21.01583 -20.40805 -19.73207 -19.45879 -18.37394 -17.45659 -17.22253 -16.27321 -15.98445 -15.72221 -15.50825 -15.30348 -15.00417 -14.90500 -14.73660 -14.15927 -13.94748 -13.91801 -13.49222 -13.43175 -13.15468 -12.98272 -12.84386 -12.55268 -12.45805 -12.16641 -12.01814 -11.74653 -11.68530 -11.57302 -11.46729 -11.31609 -11.21969 -10.93867 -10.86838 -10.73970 -10.54762 -10.28084 -10.19764 -9.29781 -9.23093 -9.12110 -8.87024 -8.12515 -6.77813 -6.60898 -4.27821 1.65610 2.57237 2.93336 3.03949 3.09164 3.32884 3.71474 3.72298 3.82344 3.99471 4.12791 4.29336 4.37146 4.38906 4.61225 4.68096 4.70566 4.97227 4.98875 4.99739 5.02289 5.13917 5.15138 5.32190 5.38424 5.45125 5.52172 5.56196 5.60353 5.66678 5.72681 5.79111 5.98380 6.05687 6.16435 6.20206 6.36500 6.75806 6.89469 6.92046 7.16352 7.21186 7.28604 7.76504 7.85753 8.10279 8.18714 8.49050 8.69673 9.31579 9.60034 10.35213 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.040342 B = 0.001819 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.902107 B =15387.024033 C =15788.598432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.112 4.112 4 H 0.075 0.925 5 C -0.157 4.157 6 C 0.125 3.875 7 C -0.147 4.147 8 O -0.551 6.551 9 C 0.090 3.910 10 N -0.697 5.697 11 C 0.514 3.486 12 O -0.531 6.531 13 C 0.483 3.517 14 O -0.522 6.522 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.139 5.139 20 C -0.323 4.323 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.263 1.263 28 C -0.077 4.077 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.377 0.623 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.417 0.583 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 -5.746 -0.808 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.131 4.131 4 H 0.093 0.907 5 C -0.214 4.214 6 C 0.084 3.916 7 C -0.204 4.204 8 O -0.357 6.357 9 C -0.033 4.033 10 N -0.352 5.352 11 C 0.295 3.705 12 O -0.408 6.408 13 C 0.264 3.736 14 O -0.399 6.399 15 N -0.226 5.226 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.092 5.092 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.760 3.240 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.187 1.187 28 C -0.228 4.228 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.225 0.775 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.255 0.745 44 H 0.244 0.756 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.383 -6.694 -1.219 23.394 hybrid contribution -0.657 1.306 0.499 1.545 sum -23.040 -5.388 -0.720 23.672 Atomic orbital electron populations 1.21837 0.95944 1.01590 1.01781 1.21534 0.95481 0.95476 1.02906 1.21750 0.94244 0.97643 0.99479 0.90676 1.22057 1.01902 1.00696 0.96772 1.21449 0.93298 0.90389 0.86492 1.21897 1.01759 1.01063 0.95721 1.86603 1.76994 1.56878 1.15186 1.22230 0.80125 0.97515 1.03480 1.45669 1.06810 1.09338 1.73417 1.20318 0.88878 0.84154 0.77134 1.90727 1.70249 1.31154 1.48655 1.19633 0.87361 0.84821 0.81782 1.90664 1.68745 1.30937 1.49550 1.42139 1.05106 1.08071 1.67301 1.17261 0.80700 0.94574 1.25017 1.24150 0.89950 0.98751 1.07331 1.78253 1.17004 0.88165 1.25755 1.44562 1.03018 1.04403 1.38554 1.19932 0.82241 0.90668 1.52694 0.86421 1.25667 0.99775 0.96261 0.95373 1.70210 1.24927 1.09542 1.34650 0.85791 0.79616 0.79626 0.79015 1.19583 1.20054 1.18714 1.21308 0.85102 0.97079 1.19318 0.92555 0.92811 0.92899 0.91610 0.91114 0.91970 0.92044 0.91881 0.91469 0.91034 0.90529 0.77518 0.90924 0.89811 0.74488 0.75619 0.80548 0.91354 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.67 4.82 -26.73 -0.13 -0.80 16 3 C -0.11 -0.64 1.93 -90.62 -0.18 -0.81 16 4 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 5 C -0.16 -0.86 8.25 37.16 0.31 -0.55 16 6 C 0.12 0.91 0.53 -90.62 -0.05 0.86 16 7 C -0.15 -1.13 7.91 37.16 0.29 -0.84 16 8 O -0.55 -4.43 12.17 -35.23 -0.43 -4.86 16 9 C 0.09 0.82 4.60 -4.04 -0.02 0.80 16 10 N -0.70 -8.39 5.18 -60.78 -0.31 -8.70 16 11 C 0.51 7.84 7.88 -11.65 -0.09 7.75 16 12 O -0.53 -8.74 16.48 5.48 0.09 -8.65 16 13 C 0.48 8.86 7.85 -11.66 -0.09 8.77 16 14 O -0.52 -10.72 13.62 5.44 0.07 -10.64 16 15 N -0.58 -11.12 5.45 -10.45 -0.06 -11.18 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 18 N -0.26 -7.53 10.41 30.81 0.32 -7.21 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.83 16 20 C -0.32 -8.48 10.24 -14.82 -0.15 -8.63 16 21 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 22 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 23 N -0.77 -21.21 11.84 55.50 0.66 -20.56 16 24 Si 0.94 18.74 29.56 -169.99 -5.02 13.72 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 28 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 29 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.07 0.39 6.71 -51.93 -0.35 0.04 16 33 H 0.07 0.46 7.54 -51.93 -0.39 0.07 16 34 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 35 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 36 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 37 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 38 H 0.07 0.52 6.54 -51.93 -0.34 0.18 16 39 H 0.08 0.52 6.43 -51.93 -0.33 0.18 16 40 H 0.38 1.94 9.05 45.56 0.41 2.36 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.76 6.17 -51.93 -0.32 0.43 16 43 H 0.42 5.05 6.46 -40.82 -0.26 4.79 16 44 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.18 4.48 5.92 -52.48 -0.31 4.17 16 46 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -33.16 380.50 -5.36 -38.53 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.58 Total: 15.48 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.79 Total: 2.17 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.56 Total: -51.47 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.26 Total: -24.16 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.16 -5.36 -38.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746415129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.547 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds