Wall clock time and date at job start Tue Mar 31 2020 21:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99582 * 2 1 4 4 C 1.53000 * 109.47429 * 270.00080 * 3 2 1 5 5 O 1.42900 * 109.46974 * 64.99880 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46753 * 60.00852 * 6 5 4 8 8 C 1.52998 * 109.47426 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47426 * 300.00873 * 6 5 4 10 10 C 1.34770 * 120.00237 * 180.02562 * 2 1 3 11 11 O 1.21361 * 120.00342 * 174.33554 * 10 2 1 12 12 C 1.49311 * 120.00022 * 354.32879 * 10 2 1 13 13 O 1.21405 * 119.99751 * 354.16450 * 12 10 2 14 14 N 1.34772 * 120.00516 * 174.16745 * 12 10 2 15 15 C 1.40294 * 120.00383 * 180.02562 * 14 12 10 16 16 C 1.40716 * 126.09991 * 359.97438 * 15 14 12 17 17 N 1.30870 * 108.37747 * 179.74179 * 16 15 14 18 18 N 1.40065 * 108.43543 * 0.43636 * 17 16 15 19 19 C 1.37296 * 126.05574 * 179.81636 * 18 17 16 20 20 H 1.08005 * 119.99460 * 173.87142 * 19 18 17 21 21 C 1.39008 * 120.00079 * 354.15155 * 19 18 17 22 22 N 1.31278 * 119.99935 * 5.48676 * 21 19 18 23 23 Si 1.86792 * 119.99808 * 185.48463 * 21 19 18 24 24 H 1.48508 * 109.47071 * 94.98167 * 23 21 19 25 25 H 1.48501 * 109.47476 * 214.97809 * 23 21 19 26 26 H 1.48502 * 109.47694 * 334.98093 * 23 21 19 27 27 C 1.35792 * 126.09911 * 179.97438 * 15 14 12 28 28 H 1.09000 * 109.46674 * 265.14773 * 1 2 3 29 29 H 1.09002 * 109.47307 * 25.14638 * 1 2 3 30 30 H 1.09000 * 109.46894 * 145.14822 * 1 2 3 31 31 H 1.08992 * 109.47234 * 30.00358 * 3 2 1 32 32 H 1.09008 * 109.46963 * 150.00573 * 3 2 1 33 33 H 1.08993 * 109.47132 * 185.00391 * 4 3 2 34 34 H 1.09007 * 109.46981 * 305.00346 * 4 3 2 35 35 H 1.08996 * 109.47185 * 59.99621 * 7 6 5 36 36 H 1.08998 * 109.47143 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46980 * 299.99412 * 7 6 5 38 38 H 1.09008 * 109.46703 * 60.00253 * 8 6 5 39 39 H 1.08998 * 109.47374 * 180.02562 * 8 6 5 40 40 H 1.08996 * 109.47193 * 300.00796 * 8 6 5 41 41 H 1.08995 * 109.47108 * 59.99631 * 9 6 5 42 42 H 1.08998 * 109.47088 * 179.97438 * 9 6 5 43 43 H 1.08996 * 109.47145 * 299.99604 * 9 6 5 44 44 H 0.97005 * 119.99537 * 359.97438 * 14 12 10 45 45 H 1.08004 * 125.81046 * 0.02562 * 16 15 14 46 46 H 0.96998 * 120.00175 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25132 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 8 1.2059 1.9936 -2.0813 6 6 1.3323 2.4177 -3.4401 7 6 2.0182 1.3195 -4.2553 8 6 -0.0567 2.6918 -4.0201 9 6 2.1708 3.6961 -3.4996 10 6 2.1389 -1.1671 -0.0005 11 8 3.3481 -1.1697 -0.1043 12 6 1.3979 -2.4571 0.1267 13 8 0.2022 -2.4521 0.3367 14 7 2.0564 -3.6271 0.0084 15 6 1.3600 -4.8392 0.1274 16 6 -0.0188 -4.9829 0.3691 17 7 -0.2997 -6.2605 0.4093 18 7 0.8842 -6.9809 0.2059 19 6 1.0040 -8.3484 0.1818 20 1 1.9477 -8.8031 -0.0813 21 6 -0.0908 -9.1476 0.4902 22 7 -1.2653 -8.5997 0.6990 23 14 0.1095 -11.0010 0.6073 24 1 0.3409 -11.3854 2.0230 25 1 -1.1223 -11.6645 0.1094 26 1 1.2689 -11.4269 -0.2171 27 6 1.8962 -6.0829 0.0299 28 1 -0.3633 -0.0869 1.0240 29 1 -0.3634 0.9303 -0.4367 30 1 -0.3633 -0.8433 -0.5873 31 1 1.6084 2.0284 0.5138 32 1 3.1500 1.1385 0.5138 33 1 3.0731 2.6065 -1.4437 34 1 2.9642 0.9133 -1.9816 35 1 1.4209 0.4088 -4.2129 36 1 2.1142 1.6427 -5.2918 37 1 3.0079 1.1246 -3.8420 38 1 -0.5450 3.4743 -3.4392 39 1 0.0397 3.0148 -5.0567 40 1 -0.6543 1.7813 -3.9777 41 1 3.1603 3.5011 -3.0863 42 1 2.2675 4.0192 -4.5360 43 1 1.6821 4.4784 -2.9188 44 1 3.0117 -3.6311 -0.1597 45 1 -0.7258 -4.1762 0.4950 46 1 -2.0292 -9.1573 0.9146 47 1 2.9342 -6.3182 -0.1533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746446548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:01 Heat of formation + Delta-G solvation = -21.330515 kcal Electronic energy + Delta-G solvation = -29526.722967 eV Core-core repulsion = 25326.606883 eV Total energy + Delta-G solvation = -4200.116084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63785 -39.64221 -39.14986 -37.88176 -36.04833 -34.29254 -33.55557 -33.11513 -30.34766 -30.14219 -28.06639 -27.73157 -27.68861 -26.62352 -25.33793 -24.23006 -22.28688 -20.98532 -20.33176 -19.60026 -19.33624 -17.69951 -17.28785 -16.86235 -16.52368 -16.20079 -15.65456 -15.49819 -15.11917 -15.07307 -14.83346 -14.25043 -13.96907 -13.85799 -13.70033 -13.47276 -13.23175 -12.97921 -12.87032 -12.74897 -12.42617 -12.32781 -12.21119 -12.03915 -11.97998 -11.85068 -11.73169 -11.47250 -11.42894 -11.30379 -11.08130 -10.81457 -10.73456 -10.54457 -10.22993 -9.75089 -9.22545 -8.91909 -8.81904 -8.75626 -8.11511 -6.75800 -6.60173 -4.26902 1.69462 2.57411 2.93647 3.04204 3.09322 3.31078 3.41972 3.70601 3.74429 3.89599 4.38720 4.48913 4.53733 4.57570 4.71356 4.87772 4.91186 4.97940 5.02707 5.07023 5.15809 5.22381 5.30031 5.38989 5.41339 5.49034 5.54254 5.57823 5.65691 5.75233 5.82936 5.96432 5.99426 6.14540 6.21348 6.37574 6.37964 6.78463 6.90285 6.95900 7.02657 7.17078 7.18958 7.73719 7.84851 8.13453 8.20136 8.51788 8.71565 9.32573 9.61134 10.35925 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002127 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.023897 B =13157.892992 C =13388.732513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.583 5.583 3 C 0.119 3.881 4 C 0.040 3.960 5 O -0.372 6.372 6 C 0.107 3.893 7 C -0.179 4.179 8 C -0.137 4.137 9 C -0.177 4.177 10 C 0.512 3.488 11 O -0.535 6.535 12 C 0.484 3.516 13 O -0.516 6.516 14 N -0.585 5.585 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 20.946 -6.258 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.316 5.316 3 C -0.004 4.004 4 C -0.038 4.038 5 O -0.291 6.291 6 C 0.068 3.932 7 C -0.236 4.236 8 C -0.194 4.194 9 C -0.235 4.235 10 C 0.295 3.705 11 O -0.412 6.412 12 C 0.265 3.735 13 O -0.393 6.393 14 N -0.228 5.228 15 C -0.173 4.173 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.243 0.757 45 H 0.195 0.805 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.462 20.001 -5.866 21.316 hybrid contribution 1.600 -0.090 -0.304 1.631 sum 6.062 19.911 -6.170 21.709 Atomic orbital electron populations 1.22164 0.77010 1.03879 1.02838 1.47569 1.08582 1.04521 1.70895 1.21613 0.98601 0.84906 0.95272 1.22992 0.87194 0.99621 0.93951 1.87968 1.29201 1.87340 1.24641 1.21474 0.96304 0.92888 0.82535 1.22428 1.01281 0.99594 1.00333 1.21748 0.94775 1.02698 1.00209 1.22424 1.00404 0.98043 1.02612 1.20353 0.87281 0.85431 0.77399 1.90706 1.13935 1.87456 1.49067 1.19618 0.87533 0.84474 0.81858 1.90624 1.14111 1.86324 1.48273 1.42165 1.11571 1.03283 1.65774 1.17255 0.92974 0.83330 1.23790 1.24142 0.93582 0.95543 1.06962 1.78250 1.04119 1.01509 1.25307 1.44557 1.03443 1.04916 1.37697 1.19921 0.99704 0.76718 1.49133 0.86468 1.25663 0.94512 1.01504 0.95426 1.70210 0.99374 1.36529 1.33262 0.85794 0.78751 0.80358 0.79157 1.19593 1.20071 1.18732 1.21308 0.94692 0.88217 1.18648 0.92293 0.91039 0.88799 0.89286 0.88362 0.92206 0.92258 0.91558 0.91660 0.92208 0.91872 0.91310 0.91614 0.92247 0.91626 0.91760 0.75722 0.80535 0.91382 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 9.01 59.85 0.54 1.58 16 2 N -0.58 -7.61 2.84 -182.13 -0.52 -8.13 16 3 C 0.12 1.19 5.75 -4.04 -0.02 1.17 16 4 C 0.04 0.38 5.48 37.16 0.20 0.59 16 5 O -0.37 -3.82 8.90 -35.23 -0.31 -4.13 16 6 C 0.11 0.91 1.14 -90.62 -0.10 0.81 16 7 C -0.18 -1.57 8.25 37.16 0.31 -1.26 16 8 C -0.14 -1.04 8.84 37.16 0.33 -0.71 16 9 C -0.18 -1.20 8.25 37.16 0.31 -0.89 16 10 C 0.51 8.10 7.71 -11.65 -0.09 8.01 16 11 O -0.53 -8.93 16.13 5.49 0.09 -8.84 16 12 C 0.48 8.91 7.66 -11.65 -0.09 8.82 16 13 O -0.52 -10.31 10.53 5.45 0.06 -10.25 16 14 N -0.59 -11.20 5.45 -10.46 -0.06 -11.25 16 15 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 16 C -0.03 -0.69 10.84 -17.03 -0.18 -0.87 16 17 N -0.26 -7.49 10.41 30.81 0.32 -7.17 16 18 N -0.14 -3.80 3.73 -11.40 -0.04 -3.84 16 19 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 20 H 0.12 2.75 7.84 -52.48 -0.41 2.34 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.20 11.83 55.50 0.66 -20.54 16 23 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 28 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.07 0.77 7.22 -51.93 -0.37 0.39 16 30 H 0.09 1.38 5.94 -51.93 -0.31 1.07 16 31 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.10 0.97 7.51 -51.92 -0.39 0.58 16 33 H 0.06 0.46 6.41 -51.93 -0.33 0.13 16 34 H 0.06 0.67 6.42 -51.93 -0.33 0.33 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 38 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.41 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.18 4.42 5.92 -52.48 -0.31 4.10 16 46 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -32.24 385.95 -5.67 -37.91 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.84 Total: 11.12 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 0.18 Total: 5.57 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.36 Total: -50.94 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.17 Total: -23.22 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.24 -5.67 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746446548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.577 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds