Wall clock time and date at job start Tue Mar 31 2020 21:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99582 * 2 1 4 4 C 1.53000 * 109.47429 * 270.00080 * 3 2 1 5 5 O 1.42900 * 109.46974 * 64.99880 * 4 3 2 6 6 C 1.42898 * 114.00025 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46753 * 60.00852 * 6 5 4 8 8 C 1.52998 * 109.47426 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47426 * 300.00873 * 6 5 4 10 10 C 1.34770 * 120.00237 * 180.02562 * 2 1 3 11 11 O 1.21361 * 120.00342 * 174.33554 * 10 2 1 12 12 C 1.49311 * 120.00022 * 354.32879 * 10 2 1 13 13 O 1.21405 * 119.99751 * 354.16450 * 12 10 2 14 14 N 1.34772 * 120.00516 * 174.16745 * 12 10 2 15 15 C 1.40294 * 120.00383 * 180.02562 * 14 12 10 16 16 C 1.40716 * 126.09991 * 359.97438 * 15 14 12 17 17 N 1.30870 * 108.37747 * 179.74179 * 16 15 14 18 18 N 1.40065 * 108.43543 * 0.43636 * 17 16 15 19 19 C 1.37296 * 126.05574 * 179.81636 * 18 17 16 20 20 H 1.08005 * 119.99460 * 173.87142 * 19 18 17 21 21 C 1.39008 * 120.00079 * 354.15155 * 19 18 17 22 22 N 1.31278 * 119.99935 * 5.48676 * 21 19 18 23 23 Si 1.86792 * 119.99808 * 185.48463 * 21 19 18 24 24 H 1.48508 * 109.47071 * 94.98167 * 23 21 19 25 25 H 1.48501 * 109.47476 * 214.97809 * 23 21 19 26 26 H 1.48502 * 109.47694 * 334.98093 * 23 21 19 27 27 C 1.35792 * 126.09911 * 179.97438 * 15 14 12 28 28 H 1.09000 * 109.46674 * 265.14773 * 1 2 3 29 29 H 1.09002 * 109.47307 * 25.14638 * 1 2 3 30 30 H 1.09000 * 109.46894 * 145.14822 * 1 2 3 31 31 H 1.08992 * 109.47234 * 30.00358 * 3 2 1 32 32 H 1.09008 * 109.46963 * 150.00573 * 3 2 1 33 33 H 1.08993 * 109.47132 * 185.00391 * 4 3 2 34 34 H 1.09007 * 109.46981 * 305.00346 * 4 3 2 35 35 H 1.08996 * 109.47185 * 59.99621 * 7 6 5 36 36 H 1.08998 * 109.47143 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46980 * 299.99412 * 7 6 5 38 38 H 1.09008 * 109.46703 * 60.00253 * 8 6 5 39 39 H 1.08998 * 109.47374 * 180.02562 * 8 6 5 40 40 H 1.08996 * 109.47193 * 300.00796 * 8 6 5 41 41 H 1.08995 * 109.47108 * 59.99631 * 9 6 5 42 42 H 1.08998 * 109.47088 * 179.97438 * 9 6 5 43 43 H 1.08996 * 109.47145 * 299.99604 * 9 6 5 44 44 H 0.97005 * 119.99537 * 359.97438 * 14 12 10 45 45 H 1.08004 * 125.81046 * 0.02562 * 16 15 14 46 46 H 0.96998 * 120.00175 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25132 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 8 1.2059 1.9936 -2.0813 6 6 1.3323 2.4177 -3.4401 7 6 2.0182 1.3195 -4.2553 8 6 -0.0567 2.6918 -4.0201 9 6 2.1708 3.6961 -3.4996 10 6 2.1389 -1.1671 -0.0005 11 8 3.3481 -1.1697 -0.1043 12 6 1.3979 -2.4571 0.1267 13 8 0.2022 -2.4521 0.3367 14 7 2.0564 -3.6271 0.0084 15 6 1.3600 -4.8392 0.1274 16 6 -0.0188 -4.9829 0.3691 17 7 -0.2997 -6.2605 0.4093 18 7 0.8842 -6.9809 0.2059 19 6 1.0040 -8.3484 0.1818 20 1 1.9477 -8.8031 -0.0813 21 6 -0.0908 -9.1476 0.4902 22 7 -1.2653 -8.5997 0.6990 23 14 0.1095 -11.0010 0.6073 24 1 0.3409 -11.3854 2.0230 25 1 -1.1223 -11.6645 0.1094 26 1 1.2689 -11.4269 -0.2171 27 6 1.8962 -6.0829 0.0299 28 1 -0.3633 -0.0869 1.0240 29 1 -0.3634 0.9303 -0.4367 30 1 -0.3633 -0.8433 -0.5873 31 1 1.6084 2.0284 0.5138 32 1 3.1500 1.1385 0.5138 33 1 3.0731 2.6065 -1.4437 34 1 2.9642 0.9133 -1.9816 35 1 1.4209 0.4088 -4.2129 36 1 2.1142 1.6427 -5.2918 37 1 3.0079 1.1246 -3.8420 38 1 -0.5450 3.4743 -3.4392 39 1 0.0397 3.0148 -5.0567 40 1 -0.6543 1.7813 -3.9777 41 1 3.1603 3.5011 -3.0863 42 1 2.2675 4.0192 -4.5360 43 1 1.6821 4.4784 -2.9188 44 1 3.0117 -3.6311 -0.1597 45 1 -0.7258 -4.1762 0.4950 46 1 -2.0292 -9.1573 0.9146 47 1 2.9342 -6.3182 -0.1533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746446548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:00 Heat of formation + Delta-G solvation = -43.074281 kcal Electronic energy + Delta-G solvation = -29527.665847 eV Core-core repulsion = 25326.606883 eV Total energy + Delta-G solvation = -4201.058965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10755 -41.28146 -40.04859 -39.30983 -37.21590 -35.90023 -34.97271 -34.29735 -32.29486 -31.05320 -29.86816 -28.36788 -28.29663 -27.85653 -27.01430 -25.56325 -23.49279 -22.82198 -21.38757 -21.10475 -20.68588 -19.40064 -18.65995 -17.97407 -17.46827 -17.41145 -17.30242 -16.75789 -16.65401 -16.15645 -15.89309 -15.58581 -15.43444 -15.18915 -14.86162 -14.78763 -14.47758 -14.31541 -14.05921 -13.62018 -13.51985 -13.46235 -13.23209 -12.99689 -12.98097 -12.91545 -12.81145 -12.70677 -12.64512 -12.57870 -12.33590 -12.09965 -12.06741 -11.91036 -11.40579 -11.06968 -10.85988 -10.51197 -10.27887 -10.13527 -9.83668 -8.60746 -8.49306 -6.26424 0.29764 1.28716 1.29575 1.41824 1.58844 1.71951 2.03201 2.11170 2.47343 2.53407 2.71459 2.86218 3.06693 3.45999 3.85257 3.91144 4.08062 4.11992 4.14889 4.33110 4.39762 4.43962 4.46736 4.53381 4.62833 4.68068 4.72989 4.81567 4.84541 4.90212 4.94563 4.96596 4.98690 4.99390 5.04871 5.16082 5.24427 5.30139 5.35122 5.37776 5.40552 5.90453 5.94979 6.21524 6.34404 6.40867 6.66971 6.76414 7.09157 7.41742 7.63311 8.50218 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002127 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.023897 B =13157.892992 C =13388.732513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.572 5.572 3 C 0.114 3.886 4 C 0.044 3.956 5 O -0.387 6.387 6 C 0.100 3.900 7 C -0.177 4.177 8 C -0.136 4.136 9 C -0.172 4.172 10 C 0.517 3.483 11 O -0.543 6.543 12 C 0.483 3.517 13 O -0.531 6.531 14 N -0.585 5.585 15 C -0.054 4.054 16 C -0.047 4.047 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.354 4.354 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.076 4.076 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.421 0.579 45 H 0.177 0.823 46 H 0.278 0.722 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 22.249 -6.725 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.304 5.304 3 C -0.007 4.007 4 C -0.034 4.034 5 O -0.307 6.307 6 C 0.061 3.939 7 C -0.235 4.235 8 C -0.193 4.193 9 C -0.229 4.229 10 C 0.299 3.701 11 O -0.422 6.422 12 C 0.265 3.735 13 O -0.409 6.409 14 N -0.230 5.230 15 C -0.161 4.161 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.068 4.932 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.226 4.226 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.259 0.741 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.296 21.367 -6.346 23.162 hybrid contribution 1.046 -0.259 -0.202 1.097 sum 7.342 21.108 -6.548 23.288 Atomic orbital electron populations 1.22101 0.76674 1.03948 1.02652 1.47683 1.08921 1.04773 1.69059 1.21924 0.98991 0.83635 0.96158 1.22945 0.87253 1.00048 0.93125 1.87937 1.29629 1.87563 1.25593 1.21658 0.97078 0.93501 0.81650 1.22419 1.00584 0.98971 1.01486 1.21764 0.94132 1.02110 1.01295 1.22371 1.00016 0.96969 1.03588 1.19781 0.86943 0.85110 0.78270 1.90707 1.13944 1.87407 1.50104 1.20266 0.87493 0.85312 0.80390 1.90625 1.15137 1.86847 1.48323 1.42109 1.12120 1.02287 1.66487 1.17292 0.92136 0.84847 1.21793 1.24248 0.95086 0.94991 1.07936 1.78146 1.06083 1.02737 1.27009 1.44836 1.03679 1.05723 1.38962 1.20644 1.01103 0.76821 1.49890 0.84188 1.26884 0.93693 1.07012 0.94130 1.70376 1.00568 1.38779 1.35102 0.84570 0.79171 0.73058 0.79373 1.19156 1.20034 1.16646 1.21992 0.95858 0.87813 1.16981 0.92080 0.88834 0.91242 0.86697 0.87837 0.89723 0.94178 0.93692 0.90087 0.92687 0.91480 0.89658 0.93103 0.92072 0.90392 0.91358 0.74134 0.80670 0.91235 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 9.01 127.77 1.15 3.28 16 2 N -0.57 -14.16 2.84 -848.51 -2.41 -16.57 16 3 C 0.11 2.02 5.75 86.38 0.50 2.51 16 4 C 0.04 0.75 5.48 71.98 0.39 1.14 16 5 O -0.39 -7.25 8.90 -148.98 -1.33 -8.58 16 6 C 0.10 1.53 1.14 -10.79 -0.01 1.52 16 7 C -0.18 -2.94 8.25 71.98 0.59 -2.35 16 8 C -0.14 -1.85 8.84 71.98 0.64 -1.22 16 9 C -0.17 -1.88 8.25 71.98 0.59 -1.29 16 10 C 0.52 15.88 7.71 87.23 0.67 16.55 16 11 O -0.54 -17.43 16.13 -3.28 -0.05 -17.48 16 12 C 0.48 17.75 7.66 87.23 0.67 18.42 16 13 O -0.53 -21.59 10.53 -3.42 -0.04 -21.62 16 14 N -0.59 -22.16 5.45 -305.33 -1.66 -23.82 16 15 C -0.05 -2.54 6.90 37.82 0.26 -2.28 16 16 C -0.05 -2.52 10.84 85.44 0.93 -1.60 16 17 N -0.31 -18.37 10.41 -56.44 -0.59 -18.96 16 18 N -0.16 -9.09 3.73 -189.97 -0.71 -9.80 16 19 C -0.35 -18.66 10.24 84.02 0.86 -17.80 16 20 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 21 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 22 N -0.82 -46.89 11.83 21.66 0.26 -46.63 16 23 Si 1.02 38.36 29.55 68.60 2.03 40.39 16 24 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.28 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 27 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 28 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 29 H 0.09 1.85 7.22 -2.39 -0.02 1.84 16 30 H 0.07 2.06 5.94 -2.39 -0.01 2.04 16 31 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.10 1.78 7.51 -2.38 -0.02 1.76 16 33 H 0.08 1.05 6.41 -2.39 -0.02 1.03 16 34 H 0.04 0.85 6.42 -2.38 -0.02 0.84 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 0.95 6.54 -2.38 -0.02 0.94 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.65 6.54 -2.39 -0.02 0.63 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.42 13.56 8.31 -92.70 -0.77 12.79 16 45 H 0.18 9.18 5.92 -2.91 -0.02 9.16 16 46 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.19 7.02 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -72.24 385.95 4.40 -67.84 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: 0.23 Total: 40.73 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 8.67 Total: 14.51 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.11 Total: -115.78 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.42 Total: -47.68 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -72.24 4.40 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746446548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.767 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds