Wall clock time and date at job start Tue Mar 31 2020 21:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46948 * 2 1 4 4 C 1.52998 * 109.47136 * 239.99982 * 2 1 3 5 5 C 1.53001 * 109.47013 * 119.99869 * 2 1 3 6 6 C 1.52990 * 109.47098 * 65.73366 * 5 2 1 7 7 H 1.09004 * 109.47453 * 53.16702 * 6 5 2 8 8 C 1.52999 * 109.47562 * 173.16889 * 6 5 2 9 9 O 1.42904 * 109.46820 * 54.99618 * 8 6 5 10 10 N 1.46506 * 109.47468 * 293.16839 * 6 5 2 11 11 C 1.34777 * 119.99991 * 154.99675 * 10 6 5 12 12 O 1.21364 * 120.00379 * 0.02562 * 11 10 6 13 13 C 1.49309 * 119.99514 * 180.02562 * 11 10 6 14 14 O 1.21410 * 120.00148 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99823 * 180.02562 * 13 11 10 16 16 C 1.40294 * 119.99913 * 179.97438 * 15 13 11 17 17 C 1.40721 * 126.10396 * 359.69091 * 16 15 13 18 18 N 1.30871 * 108.38062 * 179.84957 * 17 16 15 19 19 N 1.40063 * 108.43209 * 0.40940 * 18 17 16 20 20 C 1.37298 * 126.05390 * 179.74149 * 19 18 17 21 21 H 1.07998 * 120.00343 * 180.02562 * 20 19 18 22 22 C 1.39004 * 120.00121 * 359.97438 * 20 19 18 23 23 N 1.31286 * 119.99908 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00134 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47110 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47049 * 120.00415 * 24 22 20 27 27 H 1.48498 * 109.46779 * 239.99802 * 24 22 20 28 28 C 1.35791 * 126.09906 * 179.97438 * 16 15 13 29 29 H 1.09007 * 109.47439 * 291.64498 * 1 2 3 30 30 H 1.09004 * 109.47435 * 51.64496 * 1 2 3 31 31 H 1.08997 * 109.47451 * 171.64261 * 1 2 3 32 32 H 1.08997 * 109.46556 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46938 * 299.99818 * 3 2 1 34 34 H 1.09000 * 109.47057 * 60.00174 * 3 2 1 35 35 H 1.08998 * 109.46940 * 300.00369 * 4 2 1 36 36 H 1.09001 * 109.47341 * 59.99820 * 4 2 1 37 37 H 1.08998 * 109.47176 * 179.97438 * 4 2 1 38 38 H 1.08994 * 109.47201 * 305.72924 * 5 2 1 39 39 H 1.08996 * 109.46571 * 185.73577 * 5 2 1 40 40 H 1.08990 * 109.47707 * 174.99945 * 8 6 5 41 41 H 1.09004 * 109.46843 * 295.00071 * 8 6 5 42 42 H 0.96700 * 113.99651 * 180.02562 * 9 8 6 43 43 H 0.97003 * 119.99382 * 335.00311 * 10 6 5 44 44 H 0.97003 * 120.00318 * 0.02562 * 15 13 11 45 45 H 1.08003 * 125.80612 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99998 * 180.02562 * 23 22 20 47 47 H 1.08000 * 126.25201 * 359.95117 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.6511 -2.1992 1.1793 7 1 1.9925 -2.6205 0.2337 8 6 2.3039 -2.9539 2.3391 9 8 1.9485 -2.3290 3.5741 10 7 0.1945 -2.3259 1.2727 11 6 -0.4231 -3.4035 0.7494 12 8 0.2273 -4.2692 0.2013 13 6 -1.9076 -3.5323 0.8441 14 8 -2.5583 -2.6666 1.3929 15 7 -2.5252 -4.6101 0.3213 16 6 -3.9201 -4.7314 0.4107 17 6 -4.7949 -3.8128 1.0201 18 7 -6.0169 -4.2660 0.9017 19 7 -5.9713 -5.4907 0.2237 20 6 -7.0492 -6.2814 -0.0898 21 1 -6.9010 -7.2121 -0.6172 22 6 -8.3311 -5.8845 0.2726 23 7 -8.5113 -4.7534 0.9143 24 14 -9.7975 -6.9606 -0.1533 25 1 -9.3297 -8.1726 -0.8725 26 1 -10.4952 -7.3630 1.0944 27 1 -10.7333 -6.2011 -1.0208 28 6 -4.6663 -5.7587 -0.0705 29 1 -0.3634 0.3791 0.9552 30 1 -0.3634 0.6377 -0.8059 31 1 -0.3634 -1.0167 -0.1494 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.5953 -0.2701 2.1362 39 1 3.1251 -0.6331 1.3020 40 1 1.9568 -3.9871 2.3416 41 1 3.3873 -2.9349 2.2209 42 1 2.3285 -2.7555 4.3544 43 1 -0.3254 -1.6342 1.7111 44 1 -2.0053 -5.3024 -0.1162 45 1 -4.5069 -2.8899 1.5015 46 1 -9.4058 -4.4766 1.1675 47 1 -4.2947 -6.6288 -0.5913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746448813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:06 Heat of formation + Delta-G solvation = -39.577373 kcal Electronic energy + Delta-G solvation = -29830.414879 eV Core-core repulsion = 25629.507552 eV Total energy + Delta-G solvation = -4200.907327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76766 -39.75150 -38.69002 -37.62773 -36.78480 -34.75937 -33.94854 -33.13251 -30.69435 -30.29869 -28.03288 -27.53925 -27.36431 -26.31993 -25.45336 -24.07872 -21.51373 -20.91616 -20.29902 -19.50089 -19.17848 -17.94715 -17.78880 -17.38518 -16.39160 -15.96818 -15.58704 -15.44550 -15.11285 -15.00000 -14.70183 -14.48530 -14.18259 -14.01812 -13.68068 -13.57557 -13.25808 -13.01396 -12.99014 -12.87117 -12.37524 -12.22798 -11.89422 -11.74947 -11.73949 -11.61666 -11.53733 -11.30215 -11.21374 -10.90608 -10.79670 -10.75097 -10.69984 -10.52718 -10.28131 -10.24085 -9.22968 -9.11939 -9.03691 -8.86461 -8.12001 -6.76788 -6.59966 -4.27078 1.67469 2.62140 2.92770 3.04236 3.10001 3.33763 3.72529 3.75952 3.97890 4.02932 4.31801 4.38553 4.53136 4.61146 4.64120 4.91167 4.95695 4.98700 5.03286 5.10203 5.17774 5.32260 5.41818 5.46723 5.48450 5.58773 5.60443 5.76898 5.82016 5.83614 5.91518 6.08965 6.16906 6.20737 6.26248 6.31059 6.37108 6.77154 6.89824 6.94036 7.17072 7.27057 7.35807 7.78067 7.87888 8.12139 8.19593 8.50373 8.70733 9.32103 9.60855 10.35875 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002273 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.268259 B =12313.571693 C =12700.427408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.147 4.147 5 C -0.111 4.111 6 C 0.143 3.857 7 H 0.109 0.891 8 C 0.061 3.939 9 O -0.567 6.567 10 N -0.686 5.686 11 C 0.513 3.487 12 O -0.534 6.534 13 C 0.482 3.518 14 O -0.521 6.521 15 N -0.584 5.584 16 C -0.068 4.068 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.378 0.622 43 H 0.417 0.583 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.410 6.097 -0.035 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.149 4.149 6 C 0.039 3.961 7 H 0.126 0.874 8 C -0.018 4.018 9 O -0.372 6.372 10 N -0.341 5.341 11 C 0.294 3.706 12 O -0.411 6.411 13 C 0.263 3.737 14 O -0.398 6.398 15 N -0.227 5.227 16 C -0.174 4.174 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.094 4.906 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.256 0.744 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.666 6.861 -0.091 20.829 hybrid contribution 0.677 -1.148 -0.034 1.333 sum 20.343 5.713 -0.125 21.130 Atomic orbital electron populations 1.22250 0.94042 1.03176 1.01893 1.20587 0.96236 0.95373 0.94931 1.21859 1.00597 0.95344 1.01881 1.21987 1.00657 1.00670 0.97139 1.21852 1.01527 0.92992 0.98479 1.21329 0.79805 0.96826 0.98188 0.87375 1.22665 0.97984 0.96364 0.84759 1.86487 1.76727 1.58166 1.15819 1.46012 1.07686 1.23149 1.57263 1.20325 0.88985 0.82272 0.78996 1.90715 1.67149 1.39983 1.43220 1.19675 0.87620 0.83751 0.82643 1.90663 1.65666 1.40283 1.43173 1.42145 1.05944 1.21210 1.53396 1.17253 0.81271 1.01374 1.17535 1.24150 0.89797 1.01350 1.04939 1.78261 1.17822 0.95566 1.17452 1.44569 1.03201 1.12483 1.30319 1.19963 0.83420 1.03345 1.38638 0.86416 1.25670 0.99514 0.96544 0.95436 1.70220 1.23332 1.18027 1.27792 0.85743 0.79963 0.79559 0.78774 1.18633 1.19869 1.19871 1.21303 0.85477 1.02120 1.14025 0.92427 0.92821 0.91220 0.92856 0.92632 0.92583 0.92151 0.92582 0.92716 0.90127 0.90433 0.92887 0.92744 0.77499 0.74407 0.75666 0.80552 0.91419 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 7.04 37.16 0.26 -1.34 16 2 C -0.07 -0.60 0.80 -154.50 -0.12 -0.72 16 3 C -0.14 -1.02 8.47 37.16 0.31 -0.71 16 4 C -0.15 -1.23 7.97 37.16 0.30 -0.94 16 5 C -0.11 -0.89 3.65 -26.74 -0.10 -0.99 16 6 C 0.14 1.38 2.03 -67.93 -0.14 1.24 16 7 H 0.11 1.08 5.38 -51.93 -0.28 0.80 16 8 C 0.06 0.54 6.85 37.16 0.25 0.79 16 9 O -0.57 -5.04 12.86 -35.23 -0.45 -5.50 16 10 N -0.69 -8.33 2.74 -54.28 -0.15 -8.48 16 11 C 0.51 7.71 7.39 -11.65 -0.09 7.62 16 12 O -0.53 -8.50 16.14 5.48 0.09 -8.42 16 13 C 0.48 8.79 7.85 -11.65 -0.09 8.70 16 14 O -0.52 -10.62 13.62 5.44 0.07 -10.54 16 15 N -0.58 -11.08 5.45 -10.45 -0.06 -11.14 16 16 C -0.07 -1.59 6.90 -83.92 -0.58 -2.17 16 17 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 18 N -0.26 -7.50 10.39 30.81 0.32 -7.17 16 19 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 20 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 21 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.22 11.81 55.50 0.66 -20.56 16 24 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 16 25 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 29 H 0.06 0.58 7.80 -51.93 -0.41 0.18 16 30 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.84 5.38 -51.93 -0.28 0.56 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.58 6.19 -51.93 -0.32 0.26 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.72 7.77 -51.93 -0.40 0.31 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 1.88 9.12 45.56 0.42 2.29 16 43 H 0.42 5.17 6.54 -40.82 -0.27 4.90 16 44 H 0.41 6.69 8.29 -40.82 -0.34 6.35 16 45 H 0.18 4.48 5.92 -52.48 -0.31 4.16 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -32.90 384.50 -5.36 -38.26 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -5.96 Total: 16.77 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.61 Total: 1.08 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.73 Total: -51.19 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.29 Total: -24.45 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.90 -5.36 -38.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746448813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.317 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds