Wall clock time and date at job start Tue Mar 31 2020 21:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46948 * 2 1 4 4 C 1.52998 * 109.47136 * 239.99982 * 2 1 3 5 5 C 1.53001 * 109.47013 * 119.99869 * 2 1 3 6 6 C 1.52990 * 109.47098 * 65.73366 * 5 2 1 7 7 H 1.09004 * 109.47453 * 53.16702 * 6 5 2 8 8 C 1.52999 * 109.47562 * 173.16889 * 6 5 2 9 9 O 1.42904 * 109.46820 * 54.99618 * 8 6 5 10 10 N 1.46506 * 109.47468 * 293.16839 * 6 5 2 11 11 C 1.34777 * 119.99991 * 154.99675 * 10 6 5 12 12 O 1.21364 * 120.00379 * 0.02562 * 11 10 6 13 13 C 1.49309 * 119.99514 * 180.02562 * 11 10 6 14 14 O 1.21410 * 120.00148 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99823 * 180.02562 * 13 11 10 16 16 C 1.40294 * 119.99913 * 179.97438 * 15 13 11 17 17 C 1.40721 * 126.10396 * 359.69091 * 16 15 13 18 18 N 1.30871 * 108.38062 * 179.84957 * 17 16 15 19 19 N 1.40063 * 108.43209 * 0.40940 * 18 17 16 20 20 C 1.37298 * 126.05390 * 179.74149 * 19 18 17 21 21 H 1.07998 * 120.00343 * 180.02562 * 20 19 18 22 22 C 1.39004 * 120.00121 * 359.97438 * 20 19 18 23 23 N 1.31286 * 119.99908 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00134 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47110 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47049 * 120.00415 * 24 22 20 27 27 H 1.48498 * 109.46779 * 239.99802 * 24 22 20 28 28 C 1.35791 * 126.09906 * 179.97438 * 16 15 13 29 29 H 1.09007 * 109.47439 * 291.64498 * 1 2 3 30 30 H 1.09004 * 109.47435 * 51.64496 * 1 2 3 31 31 H 1.08997 * 109.47451 * 171.64261 * 1 2 3 32 32 H 1.08997 * 109.46556 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46938 * 299.99818 * 3 2 1 34 34 H 1.09000 * 109.47057 * 60.00174 * 3 2 1 35 35 H 1.08998 * 109.46940 * 300.00369 * 4 2 1 36 36 H 1.09001 * 109.47341 * 59.99820 * 4 2 1 37 37 H 1.08998 * 109.47176 * 179.97438 * 4 2 1 38 38 H 1.08994 * 109.47201 * 305.72924 * 5 2 1 39 39 H 1.08996 * 109.46571 * 185.73577 * 5 2 1 40 40 H 1.08990 * 109.47707 * 174.99945 * 8 6 5 41 41 H 1.09004 * 109.46843 * 295.00071 * 8 6 5 42 42 H 0.96700 * 113.99651 * 180.02562 * 9 8 6 43 43 H 0.97003 * 119.99382 * 335.00311 * 10 6 5 44 44 H 0.97003 * 120.00318 * 0.02562 * 15 13 11 45 45 H 1.08003 * 125.80612 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99998 * 180.02562 * 23 22 20 47 47 H 1.08000 * 126.25201 * 359.95117 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.6511 -2.1992 1.1793 7 1 1.9925 -2.6205 0.2337 8 6 2.3039 -2.9539 2.3391 9 8 1.9485 -2.3290 3.5741 10 7 0.1945 -2.3259 1.2727 11 6 -0.4231 -3.4035 0.7494 12 8 0.2273 -4.2692 0.2013 13 6 -1.9076 -3.5323 0.8441 14 8 -2.5583 -2.6666 1.3929 15 7 -2.5252 -4.6101 0.3213 16 6 -3.9201 -4.7314 0.4107 17 6 -4.7949 -3.8128 1.0201 18 7 -6.0169 -4.2660 0.9017 19 7 -5.9713 -5.4907 0.2237 20 6 -7.0492 -6.2814 -0.0898 21 1 -6.9010 -7.2121 -0.6172 22 6 -8.3311 -5.8845 0.2726 23 7 -8.5113 -4.7534 0.9143 24 14 -9.7975 -6.9606 -0.1533 25 1 -9.3297 -8.1726 -0.8725 26 1 -10.4952 -7.3630 1.0944 27 1 -10.7333 -6.2011 -1.0208 28 6 -4.6663 -5.7587 -0.0705 29 1 -0.3634 0.3791 0.9552 30 1 -0.3634 0.6377 -0.8059 31 1 -0.3634 -1.0167 -0.1494 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.5953 -0.2701 2.1362 39 1 3.1251 -0.6331 1.3020 40 1 1.9568 -3.9871 2.3416 41 1 3.3873 -2.9349 2.2209 42 1 2.3285 -2.7555 4.3544 43 1 -0.3254 -1.6342 1.7111 44 1 -2.0053 -5.3024 -0.1162 45 1 -4.5069 -2.8899 1.5015 46 1 -9.4058 -4.4766 1.1675 47 1 -4.2947 -6.6288 -0.5913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746448813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:05 Heat of formation + Delta-G solvation = -64.489439 kcal Electronic energy + Delta-G solvation = -29831.495147 eV Core-core repulsion = 25629.507552 eV Total energy + Delta-G solvation = -4201.987595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11917 -41.38294 -39.98141 -38.85088 -37.45832 -36.24496 -35.30256 -34.80026 -32.30447 -31.55278 -29.86738 -28.20235 -28.10494 -27.24368 -26.97436 -25.59341 -22.99728 -22.38555 -21.52714 -21.23656 -20.16564 -19.37611 -19.01682 -18.49603 -17.54829 -17.45579 -17.10422 -16.74192 -16.57671 -16.08543 -15.76561 -15.51770 -15.28429 -15.27193 -14.99917 -14.88800 -14.73155 -14.53113 -14.02139 -13.61521 -13.52375 -13.38334 -13.01332 -13.00145 -12.94455 -12.93135 -12.59380 -12.53941 -12.43200 -12.27613 -12.02885 -11.98818 -11.55694 -11.46504 -11.39817 -11.08548 -10.92688 -10.87344 -10.53804 -10.14653 -10.04013 -8.62464 -8.49258 -6.26911 0.29777 1.28269 1.32143 1.42394 1.59965 1.71985 2.04545 2.11507 2.53529 2.58846 2.93886 3.07337 3.39321 3.52210 3.64115 3.84780 3.94122 4.18958 4.25094 4.39165 4.42964 4.51871 4.52128 4.61840 4.73706 4.76562 4.81059 4.86547 4.94205 4.95685 4.98045 5.06230 5.11594 5.15350 5.21508 5.23644 5.28765 5.30719 5.42699 5.48813 5.54844 5.90602 6.03306 6.25028 6.48450 6.67085 6.80468 6.89522 7.08111 7.41105 7.62442 8.50143 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002273 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.268259 B =12313.571693 C =12700.427408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.145 4.145 5 C -0.102 4.102 6 C 0.136 3.864 7 H 0.109 0.891 8 C 0.064 3.936 9 O -0.582 6.582 10 N -0.671 5.671 11 C 0.522 3.478 12 O -0.541 6.541 13 C 0.483 3.517 14 O -0.543 6.543 15 N -0.583 5.583 16 C -0.056 4.056 17 C -0.049 4.049 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.075 4.075 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.395 0.605 43 H 0.416 0.584 44 H 0.423 0.577 45 H 0.174 0.826 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.643 5.267 -0.629 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.069 4.069 3 C -0.194 4.194 4 C -0.202 4.202 5 C -0.139 4.139 6 C 0.033 3.967 7 H 0.127 0.873 8 C -0.014 4.014 9 O -0.390 6.390 10 N -0.324 5.324 11 C 0.302 3.698 12 O -0.419 6.419 13 C 0.265 3.735 14 O -0.421 6.421 15 N -0.228 5.228 16 C -0.162 4.162 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.226 4.226 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.245 0.755 43 H 0.255 0.745 44 H 0.260 0.740 45 H 0.191 0.809 46 H 0.087 0.913 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 21.976 6.034 -0.677 22.799 hybrid contribution 0.175 -0.786 0.185 0.826 sum 22.151 5.248 -0.492 22.769 Atomic orbital electron populations 1.22249 0.95873 1.01690 1.01606 1.20574 0.94631 0.96389 0.95281 1.21827 1.01515 0.94236 1.01806 1.21966 1.01784 0.99604 0.96883 1.21813 1.02847 0.91407 0.97851 1.21637 0.77752 0.98350 0.98951 0.87324 1.22617 0.99499 0.94975 0.84355 1.86444 1.77358 1.58623 1.16598 1.46071 1.09027 1.21703 1.55591 1.19627 0.87111 0.83202 0.79822 1.90718 1.66590 1.40510 1.44088 1.20386 0.89252 0.82776 0.81129 1.90651 1.66763 1.40962 1.43714 1.42084 1.04343 1.22219 1.54129 1.17295 0.83024 1.00169 1.15695 1.24235 0.90154 1.02029 1.06036 1.78157 1.19370 0.97198 1.19182 1.44851 1.04650 1.12430 1.31190 1.20694 0.83888 1.04288 1.39435 0.84070 1.26897 1.02617 0.97740 0.94544 1.70388 1.24220 1.20506 1.29756 0.84521 0.75201 0.77917 0.78481 1.16383 1.19715 1.19729 1.22001 0.84459 1.03082 1.13089 0.92664 0.93183 0.93222 0.91333 0.92849 0.92605 0.93607 0.92937 0.90873 0.90716 0.88026 0.94586 0.89702 0.75519 0.74522 0.73963 0.80883 0.91256 0.79487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 7.04 71.98 0.51 -2.66 16 2 C -0.07 -1.03 0.80 -52.18 -0.04 -1.07 16 3 C -0.14 -1.70 8.47 71.99 0.61 -1.09 16 4 C -0.15 -2.16 7.97 71.98 0.57 -1.59 16 5 C -0.10 -1.39 3.65 30.59 0.11 -1.28 16 6 C 0.14 2.37 2.03 44.99 0.09 2.47 16 7 H 0.11 1.96 5.38 -2.39 -0.01 1.94 16 8 C 0.06 0.98 6.85 71.98 0.49 1.47 16 9 O -0.58 -9.09 12.86 -148.98 -1.92 -11.01 16 10 N -0.67 -15.78 2.74 -444.01 -1.22 -16.99 16 11 C 0.52 15.39 7.39 87.23 0.64 16.03 16 12 O -0.54 -16.61 16.14 -3.29 -0.05 -16.66 16 13 C 0.48 17.63 7.85 87.23 0.69 18.31 16 14 O -0.54 -22.64 13.62 -3.43 -0.05 -22.69 16 15 N -0.58 -21.91 5.45 -305.32 -1.66 -23.57 16 16 C -0.06 -2.60 6.90 37.82 0.26 -2.33 16 17 C -0.05 -2.66 10.84 85.44 0.93 -1.73 16 18 N -0.31 -18.42 10.39 -56.44 -0.59 -19.00 16 19 N -0.16 -9.05 3.73 -189.98 -0.71 -9.76 16 20 C -0.35 -18.54 10.25 84.02 0.86 -17.68 16 21 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 22 C -0.01 -0.31 5.50 84.96 0.47 0.16 16 23 N -0.82 -47.00 11.81 21.66 0.26 -46.74 16 24 Si 1.02 38.33 29.55 68.60 2.03 40.35 16 25 H -0.24 -8.12 7.11 99.48 0.71 -7.42 16 26 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 27 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 28 C -0.08 -3.54 11.50 83.41 0.96 -2.58 16 29 H 0.05 1.11 7.80 -2.38 -0.02 1.09 16 30 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 31 H 0.05 1.19 5.38 -2.39 -0.01 1.18 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.04 0.82 6.19 -2.39 -0.01 0.80 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.17 7.77 -2.39 -0.02 1.15 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.40 3.05 9.12 -74.06 -0.68 2.37 16 43 H 0.42 10.19 6.54 -92.71 -0.61 9.59 16 44 H 0.42 13.35 8.29 -92.71 -0.77 12.58 16 45 H 0.17 9.24 5.92 -2.91 -0.02 9.22 16 46 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -73.88 384.50 2.22 -71.65 By element: Atomic # 1 Polarization: 49.01 SS G_CDS: -1.02 Total: 47.99 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 7.15 Total: 6.43 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.92 Total: -116.07 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -2.02 Total: -50.36 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Total: -73.88 2.22 -71.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746448813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.162 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds