Wall clock time and date at job start Tue Mar 31 2020 21:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47259 * 2 1 4 4 C 1.53008 * 109.46729 * 59.99650 * 3 2 1 5 5 C 1.52993 * 109.47030 * 60.00700 * 4 3 2 6 6 C 1.52993 * 109.46792 * 300.00204 * 3 2 1 7 7 O 1.42903 * 109.47270 * 299.99559 * 6 3 2 8 8 C 1.52992 * 109.47073 * 180.02562 * 3 2 1 9 9 N 1.46505 * 109.46986 * 179.97438 * 8 3 2 10 10 C 1.34778 * 120.00007 * 179.97438 * 9 8 3 11 11 O 1.21366 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.49309 * 119.99924 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99668 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00138 * 180.02562 * 12 10 9 15 15 C 1.40296 * 120.00306 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.09771 * 359.96814 * 15 14 12 17 17 N 1.30874 * 108.37509 * 179.74082 * 16 15 14 18 18 N 1.40061 * 108.43445 * 0.44356 * 17 16 15 19 19 C 1.37294 * 126.05340 * 179.81771 * 18 17 16 20 20 H 1.07999 * 120.00339 * 173.75960 * 19 18 17 21 21 C 1.39009 * 120.00129 * 354.03394 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58773 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.58331 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.09925 * 179.97438 * 15 14 12 28 28 H 1.08997 * 109.47030 * 59.99746 * 1 2 3 29 29 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46974 * 300.00198 * 1 2 3 31 31 H 1.08993 * 109.47392 * 240.00004 * 2 1 3 32 32 H 1.09002 * 109.47159 * 119.99519 * 2 1 3 33 33 H 1.09007 * 109.46448 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.47111 * 300.00044 * 4 3 2 35 35 H 1.09007 * 109.47259 * 299.99490 * 5 4 3 36 36 H 1.09002 * 109.47843 * 59.99527 * 5 4 3 37 37 H 1.09001 * 109.47261 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47843 * 59.99734 * 6 3 2 39 39 H 1.09007 * 109.47259 * 179.97438 * 6 3 2 40 40 H 0.96704 * 114.00146 * 180.02562 * 7 6 3 41 41 H 1.08993 * 109.47490 * 60.00059 * 8 3 2 42 42 H 1.09002 * 109.47247 * 299.99459 * 8 3 2 43 43 H 0.96997 * 120.00020 * 0.02562 * 9 8 3 44 44 H 0.97005 * 120.00018 * 359.97438 * 14 12 10 45 45 H 1.07996 * 125.81429 * 0.02869 * 16 15 14 46 46 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 47 47 H 1.07992 * 126.25470 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 6 2.0400 1.4426 2.4985 6 6 1.5301 2.1637 -1.2492 7 8 2.0064 1.4901 -2.4160 8 6 3.5700 1.4425 -0.0006 9 7 4.0584 2.8237 -0.0013 10 6 5.3835 3.0700 -0.0014 11 8 6.1721 2.1475 -0.0014 12 6 5.8812 4.4777 -0.0014 13 8 5.0922 5.4005 -0.0018 14 7 7.2062 4.7240 -0.0021 15 6 7.6738 6.0467 -0.0026 16 6 6.8782 7.2074 -0.0033 17 7 7.6694 8.2499 0.0019 18 7 8.9956 7.7995 -0.0042 19 6 10.1177 8.5906 -0.0050 20 1 11.0951 8.1416 0.0917 21 6 9.9954 9.9702 -0.1246 22 7 8.8061 10.5260 -0.1263 23 14 11.5233 11.0331 -0.2827 24 1 11.8020 11.2888 -1.7187 25 1 11.3024 12.3245 0.4163 26 1 12.6803 10.3309 0.3287 27 6 8.9749 6.4353 -0.0028 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8930 3.1916 1.2490 34 1 0.4400 2.1638 1.2492 35 1 1.6767 0.4149 2.4985 36 1 3.1300 1.4426 2.4986 37 1 1.6770 1.9566 3.3885 38 1 0.4400 2.1637 -1.2493 39 1 1.8930 3.1916 -1.2490 40 1 1.7214 1.8938 -3.2472 41 1 3.9330 0.9288 -0.8908 42 1 3.9337 0.9286 0.8892 43 1 3.4281 3.5610 -0.0008 44 1 7.8366 3.9867 -0.0021 45 1 5.7986 7.2335 -0.0030 46 1 8.7208 11.4887 -0.2094 47 1 9.8361 5.7836 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753463872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:25 Heat of formation + Delta-G solvation = -44.651655 kcal Electronic energy + Delta-G solvation = -29388.380631 eV Core-core repulsion = 25187.253266 eV Total energy + Delta-G solvation = -4201.127365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66043 -39.83830 -39.07481 -37.76980 -36.05656 -34.76357 -33.88203 -33.12583 -31.43645 -30.32880 -29.42756 -28.07723 -26.97803 -25.35641 -24.29500 -23.50653 -22.73561 -21.01571 -20.29668 -19.49053 -18.88646 -18.03152 -17.64448 -17.45169 -16.33540 -15.99701 -15.79891 -15.58198 -15.50318 -15.09516 -15.00814 -14.91917 -14.09799 -13.86405 -13.71748 -13.45762 -13.35980 -13.12039 -13.08289 -12.98689 -12.40670 -12.37003 -12.15200 -11.86190 -11.74775 -11.57706 -11.52694 -11.31447 -11.19271 -11.00968 -10.83578 -10.68694 -10.55058 -10.54651 -10.27755 -10.21765 -9.23673 -9.17556 -9.10397 -8.87409 -8.12813 -6.77619 -6.61194 -4.27991 1.69901 2.64591 2.93249 3.03800 3.08833 3.35117 3.72797 3.74425 3.81970 4.03052 4.29335 4.36823 4.38640 4.54713 4.62484 4.81970 4.88640 4.96964 5.03574 5.05146 5.09198 5.17109 5.21842 5.30761 5.42142 5.45851 5.56720 5.60303 5.74989 5.82031 5.84242 5.92565 5.95842 6.17775 6.20336 6.24968 6.36608 6.76415 6.89303 6.92754 7.16256 7.24526 7.34087 7.77474 7.88340 8.12469 8.18642 8.49582 8.69826 9.31434 9.59765 10.34913 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002004 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.228247 B =13967.417994 C =14071.915712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.067 4.067 4 C -0.120 4.120 5 C -0.156 4.156 6 C 0.080 3.920 7 O -0.566 6.566 8 C 0.130 3.870 9 N -0.700 5.700 10 C 0.514 3.486 11 O -0.529 6.529 12 C 0.484 3.516 13 O -0.525 6.525 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.409 0.591 44 H 0.409 0.591 45 H 0.177 0.823 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.682 -17.419 0.102 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.068 4.068 4 C -0.157 4.157 5 C -0.213 4.213 6 C 0.002 3.998 7 O -0.372 6.372 8 C 0.007 3.993 9 N -0.355 5.355 10 C 0.295 3.705 11 O -0.405 6.405 12 C 0.265 3.735 13 O -0.403 6.403 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.227 0.773 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.247 0.753 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.449 -16.314 0.556 21.800 hybrid contribution 0.393 -0.104 -0.497 0.642 sum -14.056 -16.418 0.058 21.613 Atomic orbital electron populations 1.21858 0.95660 1.01682 1.01866 1.21456 0.96020 0.94391 1.02797 1.20892 0.94454 0.97289 0.94140 1.21609 1.01178 0.99501 0.93445 1.21856 1.01810 1.00594 0.97011 1.22256 0.97465 0.94766 0.85294 1.86457 1.77659 1.57082 1.15972 1.21463 0.92405 0.82404 1.03045 1.45730 1.06674 1.09520 1.73542 1.20244 0.83164 0.89788 0.77296 1.90731 1.55305 1.45999 1.48440 1.19688 0.83452 0.88791 0.81591 1.90643 1.55036 1.44804 1.49829 1.42152 1.05935 1.07296 1.67225 1.17261 0.92381 0.82903 1.24924 1.24133 1.00180 0.88508 1.07427 1.78249 0.85466 1.19731 1.25749 1.44559 1.05370 1.02056 1.38584 1.19929 0.84161 0.88670 1.52704 0.86428 1.25669 0.98559 0.97496 0.95385 1.70209 1.22454 1.11969 1.34754 0.85789 0.80135 0.79109 0.79004 1.19586 1.20069 1.18709 1.21313 0.95800 0.86399 1.19264 0.92553 0.92746 0.92445 0.90801 0.91400 0.91466 0.90994 0.92207 0.92173 0.92447 0.92981 0.93488 0.77342 0.90209 0.90837 0.75332 0.75580 0.80590 0.91378 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.21 37.16 0.34 -0.56 16 2 C -0.11 -0.76 4.49 -26.73 -0.12 -0.88 16 3 C -0.07 -0.52 0.16 -154.51 -0.03 -0.54 16 4 C -0.12 -0.85 4.46 -26.73 -0.12 -0.97 16 5 C -0.16 -1.13 9.21 37.15 0.34 -0.78 16 6 C 0.08 0.60 5.39 37.15 0.20 0.80 16 7 O -0.57 -4.68 12.31 -35.23 -0.43 -5.12 16 8 C 0.13 1.35 4.07 -4.04 -0.02 1.33 16 9 N -0.70 -8.57 4.95 -60.78 -0.30 -8.87 16 10 C 0.51 8.02 7.88 -11.65 -0.09 7.93 16 11 O -0.53 -9.07 16.48 5.48 0.09 -8.97 16 12 C 0.48 8.88 7.85 -11.65 -0.09 8.79 16 13 O -0.53 -10.63 13.62 5.45 0.07 -10.55 16 14 N -0.58 -11.18 5.45 -10.46 -0.06 -11.24 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 18 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 19 C -0.32 -8.45 10.24 -14.82 -0.15 -8.61 16 20 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.17 11.83 55.50 0.66 -20.52 16 23 Si 0.94 18.74 29.56 -169.99 -5.02 13.71 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 27 C -0.08 -1.81 11.50 -16.38 -0.19 -1.99 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 31 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 32 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 33 H 0.07 0.53 6.86 -51.93 -0.36 0.17 16 34 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 35 H 0.06 0.38 6.43 -51.92 -0.33 0.04 16 36 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.32 6.43 -51.93 -0.33 -0.02 16 39 H 0.05 0.38 6.86 -51.92 -0.36 0.02 16 40 H 0.38 1.78 9.12 45.56 0.42 2.19 16 41 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 42 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 43 H 0.41 4.68 5.63 -40.82 -0.23 4.45 16 44 H 0.41 6.82 8.29 -40.82 -0.34 6.48 16 45 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -33.38 377.33 -5.27 -38.65 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.46 Total: 15.69 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.78 Total: 2.55 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.58 Total: -51.64 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.27 Total: -24.65 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.38 -5.27 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753463872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.001 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds