Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47259 * 2 1 4 4 C 1.53008 * 109.46729 * 59.99650 * 3 2 1 5 5 C 1.52993 * 109.47030 * 60.00700 * 4 3 2 6 6 C 1.52993 * 109.46792 * 300.00204 * 3 2 1 7 7 O 1.42903 * 109.47270 * 299.99559 * 6 3 2 8 8 C 1.52992 * 109.47073 * 180.02562 * 3 2 1 9 9 N 1.46505 * 109.46986 * 179.97438 * 8 3 2 10 10 C 1.34778 * 120.00007 * 179.97438 * 9 8 3 11 11 O 1.21366 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.49309 * 119.99924 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99668 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00138 * 180.02562 * 12 10 9 15 15 C 1.40296 * 120.00306 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.09771 * 359.96814 * 15 14 12 17 17 N 1.30874 * 108.37509 * 179.74082 * 16 15 14 18 18 N 1.40061 * 108.43445 * 0.44356 * 17 16 15 19 19 C 1.37294 * 126.05340 * 179.81771 * 18 17 16 20 20 H 1.07999 * 120.00339 * 173.75960 * 19 18 17 21 21 C 1.39009 * 120.00129 * 354.03394 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58773 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.58331 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.09925 * 179.97438 * 15 14 12 28 28 H 1.08997 * 109.47030 * 59.99746 * 1 2 3 29 29 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46974 * 300.00198 * 1 2 3 31 31 H 1.08993 * 109.47392 * 240.00004 * 2 1 3 32 32 H 1.09002 * 109.47159 * 119.99519 * 2 1 3 33 33 H 1.09007 * 109.46448 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.47111 * 300.00044 * 4 3 2 35 35 H 1.09007 * 109.47259 * 299.99490 * 5 4 3 36 36 H 1.09002 * 109.47843 * 59.99527 * 5 4 3 37 37 H 1.09001 * 109.47261 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47843 * 59.99734 * 6 3 2 39 39 H 1.09007 * 109.47259 * 179.97438 * 6 3 2 40 40 H 0.96704 * 114.00146 * 180.02562 * 7 6 3 41 41 H 1.08993 * 109.47490 * 60.00059 * 8 3 2 42 42 H 1.09002 * 109.47247 * 299.99459 * 8 3 2 43 43 H 0.96997 * 120.00020 * 0.02562 * 9 8 3 44 44 H 0.97005 * 120.00018 * 359.97438 * 14 12 10 45 45 H 1.07996 * 125.81429 * 0.02869 * 16 15 14 46 46 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 47 47 H 1.07992 * 126.25470 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 6 2.0400 1.4426 2.4985 6 6 1.5301 2.1637 -1.2492 7 8 2.0064 1.4901 -2.4160 8 6 3.5700 1.4425 -0.0006 9 7 4.0584 2.8237 -0.0013 10 6 5.3835 3.0700 -0.0014 11 8 6.1721 2.1475 -0.0014 12 6 5.8812 4.4777 -0.0014 13 8 5.0922 5.4005 -0.0018 14 7 7.2062 4.7240 -0.0021 15 6 7.6738 6.0467 -0.0026 16 6 6.8782 7.2074 -0.0033 17 7 7.6694 8.2499 0.0019 18 7 8.9956 7.7995 -0.0042 19 6 10.1177 8.5906 -0.0050 20 1 11.0951 8.1416 0.0917 21 6 9.9954 9.9702 -0.1246 22 7 8.8061 10.5260 -0.1263 23 14 11.5233 11.0331 -0.2827 24 1 11.8020 11.2888 -1.7187 25 1 11.3024 12.3245 0.4163 26 1 12.6803 10.3309 0.3287 27 6 8.9749 6.4353 -0.0028 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8930 3.1916 1.2490 34 1 0.4400 2.1638 1.2492 35 1 1.6767 0.4149 2.4985 36 1 3.1300 1.4426 2.4986 37 1 1.6770 1.9566 3.3885 38 1 0.4400 2.1637 -1.2493 39 1 1.8930 3.1916 -1.2490 40 1 1.7214 1.8938 -3.2472 41 1 3.9330 0.9288 -0.8908 42 1 3.9337 0.9286 0.8892 43 1 3.4281 3.5610 -0.0008 44 1 7.8366 3.9867 -0.0021 45 1 5.7986 7.2335 -0.0030 46 1 8.7208 11.4887 -0.2094 47 1 9.8361 5.7836 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753463872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = -70.787216 kcal Electronic energy + Delta-G solvation = -29389.513954 eV Core-core repulsion = 25187.253266 eV Total energy + Delta-G solvation = -4202.260688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07642 -41.33179 -40.24278 -39.17083 -36.74210 -36.23440 -35.30019 -34.77827 -32.30413 -31.99676 -30.26475 -29.79729 -27.91112 -27.00618 -25.52985 -24.10899 -23.74410 -22.87457 -21.70342 -21.24886 -20.04667 -19.27922 -18.94253 -18.25489 -17.65575 -17.46196 -17.11848 -16.90867 -16.46483 -16.26835 -16.14830 -15.92783 -15.63929 -15.35369 -15.03423 -14.85366 -14.70004 -14.31123 -13.92311 -13.66435 -13.52757 -13.39076 -13.28851 -13.01543 -12.93025 -12.87321 -12.72906 -12.57106 -12.35309 -12.10538 -12.06931 -11.97555 -11.63358 -11.26568 -11.14218 -11.08383 -10.87600 -10.81157 -10.58517 -10.25772 -10.14496 -8.63124 -8.49932 -6.27223 0.28021 1.28886 1.30178 1.42130 1.58925 1.72023 2.03788 2.11621 2.52777 2.57957 2.93021 3.06190 3.26351 3.51868 3.63560 3.74702 3.95005 4.23977 4.28718 4.39115 4.49513 4.51871 4.53829 4.61608 4.65080 4.67740 4.71780 4.82891 4.91719 4.95383 4.98050 5.02616 5.09364 5.19894 5.21446 5.27444 5.29807 5.33141 5.35346 5.39533 5.63495 5.89522 5.99169 6.24055 6.46850 6.66432 6.79145 6.90267 7.05785 7.40793 7.62066 8.49597 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002004 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.228247 B =13967.417994 C =14071.915712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.061 4.061 4 C -0.118 4.118 5 C -0.155 4.155 6 C 0.078 3.922 7 O -0.584 6.584 8 C 0.130 3.870 9 N -0.681 5.681 10 C 0.522 3.478 11 O -0.543 6.543 12 C 0.487 3.513 13 O -0.543 6.543 14 N -0.582 5.582 15 C -0.057 4.057 16 C -0.047 4.047 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.353 4.353 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.020 2.980 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.074 4.074 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.394 0.606 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.415 0.585 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.628 -18.876 0.219 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.062 4.062 4 C -0.155 4.155 5 C -0.212 4.212 6 C 0.001 3.999 7 O -0.392 6.392 8 C 0.008 3.992 9 N -0.334 5.334 10 C 0.302 3.698 11 O -0.421 6.421 12 C 0.268 3.732 13 O -0.421 6.421 14 N -0.227 5.227 15 C -0.163 4.163 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.253 0.747 44 H 0.260 0.740 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -14.431 -17.821 0.667 22.941 hybrid contribution 0.229 0.179 -0.542 0.615 sum -14.202 -17.642 0.126 22.648 Atomic orbital electron populations 1.21838 0.94447 1.02206 1.02267 1.21421 0.96982 0.93477 1.02424 1.20883 0.92281 0.98207 0.94825 1.21615 1.02240 0.98777 0.92915 1.21854 1.00772 1.01414 0.97203 1.22304 0.98542 0.94131 0.84969 1.86422 1.78115 1.57672 1.16950 1.21607 0.94433 0.80732 1.02443 1.45727 1.05463 1.10806 1.71452 1.19674 0.84155 0.88012 0.77965 1.90734 1.55874 1.45702 1.49742 1.20262 0.82967 0.89964 0.79958 1.90634 1.55515 1.45920 1.50062 1.42089 1.06705 1.06099 1.67814 1.17301 0.91993 0.84011 1.23008 1.24243 1.00283 0.89383 1.08372 1.78148 0.86845 1.21536 1.27425 1.44840 1.05075 1.03369 1.39838 1.20655 0.84845 0.89556 1.53399 0.84140 1.26888 1.02053 0.98688 0.94079 1.70372 1.25371 1.12434 1.36614 0.84567 0.75912 0.76661 0.79019 1.19156 1.20028 1.16645 1.22001 0.97224 0.85806 1.17468 0.92511 0.92245 0.91622 0.92042 0.90948 0.92330 0.89235 0.91066 0.93734 0.92139 0.91108 0.94197 0.75695 0.91505 0.90633 0.74676 0.73956 0.80698 0.91212 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.21 71.98 0.66 -0.73 16 2 C -0.11 -1.28 4.49 30.60 0.14 -1.14 16 3 C -0.06 -0.85 0.16 -52.18 -0.01 -0.86 16 4 C -0.12 -1.45 4.46 30.59 0.14 -1.31 16 5 C -0.16 -1.98 9.21 71.98 0.66 -1.32 16 6 C 0.08 1.05 5.39 71.98 0.39 1.43 16 7 O -0.58 -8.91 12.31 -148.98 -1.83 -10.74 16 8 C 0.13 2.57 4.07 86.38 0.35 2.92 16 9 N -0.68 -16.06 4.95 -464.56 -2.30 -18.36 16 10 C 0.52 15.84 7.88 87.23 0.69 16.53 16 11 O -0.54 -18.02 16.48 -3.30 -0.05 -18.07 16 12 C 0.49 17.63 7.85 87.23 0.69 18.32 16 13 O -0.54 -22.02 13.62 -3.42 -0.05 -22.06 16 14 N -0.58 -21.89 5.45 -305.34 -1.66 -23.55 16 15 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 16 C -0.05 -2.52 10.84 85.44 0.93 -1.60 16 17 N -0.31 -18.28 10.41 -56.44 -0.59 -18.86 16 18 N -0.16 -9.01 3.73 -189.99 -0.71 -9.72 16 19 C -0.35 -18.57 10.24 84.02 0.86 -17.71 16 20 H 0.14 6.42 7.84 -2.91 -0.02 6.40 16 21 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 22 N -0.82 -46.63 11.83 21.66 0.26 -46.37 16 23 Si 1.02 38.15 29.56 68.60 2.03 40.18 16 24 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 26 H -0.24 -8.24 7.11 99.48 0.71 -7.54 16 27 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 28 H 0.06 0.53 6.43 -2.39 -0.02 0.51 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 31 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 32 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 33 H 0.06 0.83 6.86 -2.38 -0.02 0.82 16 34 H 0.09 0.82 6.43 -2.39 -0.02 0.81 16 35 H 0.07 0.74 6.43 -2.38 -0.02 0.72 16 36 H 0.04 0.71 6.43 -2.39 -0.02 0.69 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 39 H 0.04 0.59 6.86 -2.38 -0.02 0.57 16 40 H 0.39 3.19 9.12 -74.05 -0.68 2.52 16 41 H 0.07 1.55 7.68 -2.39 -0.02 1.53 16 42 H 0.08 1.50 6.43 -2.39 -0.02 1.49 16 43 H 0.41 9.13 5.63 -92.71 -0.52 8.60 16 44 H 0.42 13.51 8.29 -92.70 -0.77 12.74 16 45 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 46 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -73.78 377.33 1.35 -72.42 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.91 Total: 45.28 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.18 Total: 9.86 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -5.00 Total: -116.87 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -1.93 Total: -50.88 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -73.78 1.35 -72.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753463872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.638 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds