Wall clock time and date at job start Tue Mar 31 2020 21:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47439 * 2 1 4 4 C 1.53006 * 109.47182 * 239.99914 * 2 1 3 5 5 C 1.52997 * 109.47148 * 294.41361 * 4 2 1 6 6 H 1.09002 * 109.47655 * 56.00574 * 5 4 2 7 7 O 1.42903 * 109.46822 * 296.00209 * 5 4 2 8 8 C 1.53006 * 109.47150 * 176.00962 * 5 4 2 9 9 N 1.46494 * 109.47214 * 184.99891 * 8 5 4 10 10 C 1.34774 * 120.00395 * 179.97438 * 9 8 5 11 11 O 1.21364 * 119.99362 * 359.97438 * 10 9 8 12 12 C 1.49341 * 120.00617 * 179.97438 * 10 9 8 13 13 O 1.21391 * 119.99706 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00226 * 179.97438 * 12 10 9 15 15 C 1.39928 * 119.99843 * 179.97438 * 14 12 10 16 16 C 1.40465 * 125.98438 * 359.72713 * 15 14 12 17 17 C 1.35208 * 107.86952 * 179.85922 * 16 15 14 18 18 N 1.34995 * 107.87526 * 0.39229 * 17 16 15 19 19 C 1.46496 * 125.97078 * 179.73072 * 18 17 16 20 20 C 1.50695 * 109.47284 * 124.99810 * 19 18 17 21 21 H 1.08003 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00312 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99531 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47295 * 59.99692 * 24 22 20 26 26 H 1.48495 * 109.47224 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46933 * 300.00103 * 24 22 20 28 28 N 1.31270 * 125.97877 * 180.02562 * 15 14 12 29 29 H 1.09004 * 109.46917 * 60.00038 * 1 2 3 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47039 * 299.99985 * 1 2 3 32 32 H 1.09002 * 109.46998 * 120.00735 * 2 1 3 33 33 H 1.08996 * 109.46987 * 175.07338 * 3 2 1 34 34 H 1.08997 * 109.47086 * 295.07873 * 3 2 1 35 35 H 1.09002 * 109.46677 * 55.07635 * 3 2 1 36 36 H 1.09004 * 109.46463 * 54.40825 * 4 2 1 37 37 H 1.08999 * 109.47356 * 174.40506 * 4 2 1 38 38 H 0.96695 * 114.00223 * 300.00603 * 7 5 4 39 39 H 1.09004 * 109.46867 * 304.99407 * 8 5 4 40 40 H 1.08992 * 109.47395 * 64.99241 * 8 5 4 41 41 H 0.97003 * 120.00007 * 359.97438 * 9 8 5 42 42 H 0.96997 * 119.99677 * 0.02562 * 14 12 10 43 43 H 1.08001 * 126.05844 * 0.02562 * 16 15 14 44 44 H 1.07997 * 126.06225 * 180.10984 * 17 16 15 45 45 H 1.08997 * 109.47106 * 244.99788 * 19 18 17 46 46 H 1.09009 * 109.47075 * 4.99723 * 19 18 17 47 47 H 0.97001 * 119.99546 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6479 -2.1986 -1.1810 6 1 0.5681 -2.2827 -1.0582 7 8 2.3031 -2.8144 -0.0704 8 6 2.0702 -2.8986 -2.4744 9 7 1.5899 -4.2825 -2.4598 10 6 1.8455 -5.0956 -3.5039 11 8 2.4732 -4.6810 -4.4563 12 6 1.3564 -6.5066 -3.4889 13 8 0.7282 -6.9210 -2.5364 14 7 1.6116 -7.3194 -4.5332 15 6 1.1537 -8.6416 -4.5188 16 6 0.4251 -9.2515 -3.4843 17 6 0.1716 -10.5277 -3.8519 18 7 0.7239 -10.7262 -5.0676 19 6 0.6906 -11.9740 -5.8345 20 6 0.1123 -11.7088 -7.2005 21 1 -0.1990 -10.7105 -7.4707 22 6 -0.0186 -12.7404 -8.1060 23 7 0.3609 -13.9559 -7.7772 24 14 -0.7348 -12.4116 -9.7995 25 1 0.1086 -11.4163 -10.5090 26 1 -0.7687 -13.6764 -10.5768 27 1 -2.1145 -11.8805 -9.6588 28 7 1.3347 -9.5307 -5.4674 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.1264 1.4436 0.0883 34 1 1.7505 1.9302 -0.9308 35 1 1.6065 1.9811 0.8426 36 1 1.5972 -0.2685 -2.1364 37 1 3.1254 -0.6354 -1.3008 38 1 3.2684 -2.7770 -0.1130 39 1 1.6412 -2.3741 -3.3282 40 1 3.1573 -2.8921 -2.5528 41 1 1.0879 -4.6137 -1.6987 42 1 2.1132 -6.9881 -5.2943 43 1 0.1193 -8.7831 -2.5604 44 1 -0.3721 -11.2599 -3.2734 45 1 1.7032 -12.3639 -5.9381 46 1 0.0716 -12.7044 -5.3133 47 1 0.2692 -14.6816 -8.4143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754939317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:57 Heat of formation + Delta-G solvation = -53.167007 kcal Electronic energy + Delta-G solvation = -28032.220569 eV Core-core repulsion = 23830.723951 eV Total energy + Delta-G solvation = -4201.496618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10732 -40.27362 -39.14539 -38.31600 -35.94181 -35.30326 -34.42904 -33.35791 -31.05658 -30.76818 -29.42008 -27.68701 -27.48689 -26.66173 -24.71126 -22.89076 -22.42120 -21.36518 -20.59063 -20.29099 -19.71532 -18.46010 -17.23435 -16.84464 -16.70460 -16.58405 -16.45835 -15.96845 -15.51662 -15.31574 -15.08033 -14.67783 -14.43606 -14.28698 -14.24733 -13.94637 -13.79695 -13.28119 -12.95836 -12.79229 -12.60279 -12.41623 -12.29533 -12.28829 -11.91539 -11.87378 -11.63567 -11.54150 -11.16176 -11.07973 -11.00012 -10.86430 -10.57184 -10.53065 -10.27396 -10.04042 -9.61377 -9.59279 -9.54996 -8.64531 -8.23599 -7.58649 -6.26016 -4.31315 1.17770 2.00974 2.65099 3.01535 3.14404 3.25562 3.28815 3.33833 3.65560 3.75138 3.89571 4.00616 4.25561 4.30499 4.37316 4.39985 4.56145 4.61267 4.81443 5.00396 5.09310 5.14624 5.17202 5.21287 5.29969 5.36796 5.42365 5.45519 5.51591 5.67939 5.70740 5.82867 5.85275 5.91446 6.09708 6.30871 6.40662 6.78676 6.86151 7.01608 7.09007 7.23640 7.35115 7.59546 7.68327 7.84408 7.94268 7.97419 8.53517 8.76927 9.34536 10.82751 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.001649 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.906965 B =16970.771199 C =17387.457694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.145 4.145 5 C 0.092 3.908 6 H 0.111 0.889 7 O -0.554 6.554 8 C 0.085 3.915 9 N -0.695 5.695 10 C 0.516 3.484 11 O -0.517 6.517 12 C 0.512 3.488 13 O -0.498 6.498 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.054 3.946 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.532 4.532 21 H 0.069 0.931 22 C 0.063 3.937 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.295 5.295 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.377 0.623 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.418 0.582 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 26.794 16.543 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.183 4.183 5 C 0.033 3.967 6 H 0.129 0.871 7 O -0.360 6.360 8 C -0.039 4.039 9 N -0.349 5.349 10 C 0.296 3.704 11 O -0.393 6.393 12 C 0.292 3.708 13 O -0.371 6.371 14 N -0.247 5.247 15 C -0.003 4.003 16 C -0.317 4.317 17 C -0.096 4.096 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.570 4.570 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.126 5.126 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.225 0.775 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.255 0.745 42 H 0.260 0.740 43 H 0.179 0.821 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.960 26.163 15.437 30.522 hybrid contribution -0.128 0.305 -0.531 0.625 sum 2.832 26.469 14.906 30.509 Atomic orbital electron populations 1.21919 0.95170 1.01997 1.01828 1.21040 0.96011 0.95897 0.98265 1.21853 1.00906 0.95977 1.01860 1.22289 1.01910 0.94678 0.99411 1.22289 0.98785 0.91115 0.84519 0.87128 1.86632 1.24046 1.80574 1.44732 1.22263 1.00675 0.81453 0.99518 1.45579 1.56422 1.11783 1.21164 1.19914 0.80781 0.86392 0.83328 1.90795 1.38845 1.76030 1.33582 1.19883 0.81489 0.86357 0.83085 1.90720 1.37888 1.75206 1.33279 1.41988 1.53420 1.08136 1.21113 1.19012 1.00645 0.85075 0.95525 1.21519 1.12435 0.94416 1.03319 1.22582 1.00122 0.97995 0.88931 1.49170 1.37596 1.09706 1.13158 1.19793 0.99304 0.75443 0.91445 1.21217 1.42452 0.96029 0.97289 0.91302 1.24937 0.95167 0.94671 0.99190 1.69906 1.46802 1.00203 1.36367 0.86374 0.79644 0.77594 0.82820 1.19898 1.21017 1.20036 1.77406 1.22399 0.91969 1.20822 0.92726 0.92321 0.92626 0.90291 0.92752 0.92722 0.92598 0.90474 0.91060 0.77534 0.89878 0.90469 0.74453 0.73970 0.82144 0.81216 0.93549 0.92363 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 8.96 37.16 0.33 -0.37 16 2 C -0.09 -0.41 2.87 -90.62 -0.26 -0.67 16 3 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 4 C -0.14 -0.54 4.36 -26.73 -0.12 -0.66 16 5 C 0.09 0.44 2.86 -26.73 -0.08 0.37 16 6 H 0.11 0.57 6.41 -51.93 -0.33 0.24 16 7 O -0.55 -3.15 12.69 -35.23 -0.45 -3.60 16 8 C 0.08 0.54 5.31 -4.04 -0.02 0.52 16 9 N -0.70 -6.23 5.50 -60.77 -0.33 -6.56 16 10 C 0.52 6.32 7.89 -11.64 -0.09 6.23 16 11 O -0.52 -7.31 16.48 5.48 0.09 -7.22 16 12 C 0.51 7.51 7.85 -11.64 -0.09 7.41 16 13 O -0.50 -7.91 13.60 5.46 0.07 -7.84 16 14 N -0.60 -9.82 5.43 -11.58 -0.06 -9.88 16 15 C 0.25 5.01 8.10 -154.55 -1.25 3.76 16 16 C -0.29 -5.47 9.60 -39.82 -0.38 -5.85 16 17 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 18 N -0.31 -7.20 3.67 -62.57 -0.23 -7.43 16 19 C 0.26 6.47 6.26 -5.20 -0.03 6.43 16 20 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 21 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 24 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 N -0.29 -6.79 12.42 31.41 0.39 -6.40 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 6.50 -51.93 -0.34 -0.05 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.41 7.65 -51.93 -0.40 0.02 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.38 1.08 9.04 45.56 0.41 1.50 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.42 3.57 7.94 -40.82 -0.32 3.24 16 42 H 0.42 6.36 8.29 -40.82 -0.34 6.02 16 43 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 44 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.43 8.07 -51.92 -0.42 1.01 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -32.74 398.73 -7.30 -40.04 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.24 Total: 6.62 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.26 Total: 4.36 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.50 Total: -54.70 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.74 -7.30 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754939317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.129 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds