Wall clock time and date at job start Tue Mar 31 2020 21:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47439 * 2 1 4 4 C 1.53006 * 109.47182 * 239.99914 * 2 1 3 5 5 C 1.52997 * 109.47148 * 294.41361 * 4 2 1 6 6 H 1.09002 * 109.47655 * 56.00574 * 5 4 2 7 7 O 1.42903 * 109.46822 * 296.00209 * 5 4 2 8 8 C 1.53006 * 109.47150 * 176.00962 * 5 4 2 9 9 N 1.46494 * 109.47214 * 184.99891 * 8 5 4 10 10 C 1.34774 * 120.00395 * 179.97438 * 9 8 5 11 11 O 1.21364 * 119.99362 * 359.97438 * 10 9 8 12 12 C 1.49341 * 120.00617 * 179.97438 * 10 9 8 13 13 O 1.21391 * 119.99706 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00226 * 179.97438 * 12 10 9 15 15 C 1.39928 * 119.99843 * 179.97438 * 14 12 10 16 16 C 1.40465 * 125.98438 * 359.72713 * 15 14 12 17 17 C 1.35208 * 107.86952 * 179.85922 * 16 15 14 18 18 N 1.34995 * 107.87526 * 0.39229 * 17 16 15 19 19 C 1.46496 * 125.97078 * 179.73072 * 18 17 16 20 20 C 1.50695 * 109.47284 * 124.99810 * 19 18 17 21 21 H 1.08003 * 120.00134 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00312 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99531 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47295 * 59.99692 * 24 22 20 26 26 H 1.48495 * 109.47224 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46933 * 300.00103 * 24 22 20 28 28 N 1.31270 * 125.97877 * 180.02562 * 15 14 12 29 29 H 1.09004 * 109.46917 * 60.00038 * 1 2 3 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47039 * 299.99985 * 1 2 3 32 32 H 1.09002 * 109.46998 * 120.00735 * 2 1 3 33 33 H 1.08996 * 109.46987 * 175.07338 * 3 2 1 34 34 H 1.08997 * 109.47086 * 295.07873 * 3 2 1 35 35 H 1.09002 * 109.46677 * 55.07635 * 3 2 1 36 36 H 1.09004 * 109.46463 * 54.40825 * 4 2 1 37 37 H 1.08999 * 109.47356 * 174.40506 * 4 2 1 38 38 H 0.96695 * 114.00223 * 300.00603 * 7 5 4 39 39 H 1.09004 * 109.46867 * 304.99407 * 8 5 4 40 40 H 1.08992 * 109.47395 * 64.99241 * 8 5 4 41 41 H 0.97003 * 120.00007 * 359.97438 * 9 8 5 42 42 H 0.96997 * 119.99677 * 0.02562 * 14 12 10 43 43 H 1.08001 * 126.05844 * 0.02562 * 16 15 14 44 44 H 1.07997 * 126.06225 * 180.10984 * 17 16 15 45 45 H 1.08997 * 109.47106 * 244.99788 * 19 18 17 46 46 H 1.09009 * 109.47075 * 4.99723 * 19 18 17 47 47 H 0.97001 * 119.99546 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6479 -2.1986 -1.1810 6 1 0.5681 -2.2827 -1.0582 7 8 2.3031 -2.8144 -0.0704 8 6 2.0702 -2.8986 -2.4744 9 7 1.5899 -4.2825 -2.4598 10 6 1.8455 -5.0956 -3.5039 11 8 2.4732 -4.6810 -4.4563 12 6 1.3564 -6.5066 -3.4889 13 8 0.7282 -6.9210 -2.5364 14 7 1.6116 -7.3194 -4.5332 15 6 1.1537 -8.6416 -4.5188 16 6 0.4251 -9.2515 -3.4843 17 6 0.1716 -10.5277 -3.8519 18 7 0.7239 -10.7262 -5.0676 19 6 0.6906 -11.9740 -5.8345 20 6 0.1123 -11.7088 -7.2005 21 1 -0.1990 -10.7105 -7.4707 22 6 -0.0186 -12.7404 -8.1060 23 7 0.3609 -13.9559 -7.7772 24 14 -0.7348 -12.4116 -9.7995 25 1 0.1086 -11.4163 -10.5090 26 1 -0.7687 -13.6764 -10.5768 27 1 -2.1145 -11.8805 -9.6588 28 7 1.3347 -9.5307 -5.4674 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.1264 1.4436 0.0883 34 1 1.7505 1.9302 -0.9308 35 1 1.6065 1.9811 0.8426 36 1 1.5972 -0.2685 -2.1364 37 1 3.1254 -0.6354 -1.3008 38 1 3.2684 -2.7770 -0.1130 39 1 1.6412 -2.3741 -3.3282 40 1 3.1573 -2.8921 -2.5528 41 1 1.0879 -4.6137 -1.6987 42 1 2.1132 -6.9881 -5.2943 43 1 0.1193 -8.7831 -2.5604 44 1 -0.3721 -11.2599 -3.2734 45 1 1.7032 -12.3639 -5.9381 46 1 0.0716 -12.7044 -5.3133 47 1 0.2692 -14.6816 -8.4143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754939317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:56 Heat of formation + Delta-G solvation = -77.694797 kcal Electronic energy + Delta-G solvation = -28033.284174 eV Core-core repulsion = 23830.723951 eV Total energy + Delta-G solvation = -4202.560223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45292 -41.54098 -39.95320 -39.16689 -36.72613 -36.20603 -35.51976 -35.11998 -32.83890 -31.30014 -31.02563 -28.90481 -28.01620 -27.77677 -25.88493 -24.55557 -23.00379 -22.60394 -21.84998 -21.07330 -20.79841 -19.58992 -18.70877 -18.30345 -17.79828 -17.45906 -17.43293 -16.95254 -16.83321 -16.30078 -16.12496 -15.94475 -15.62676 -15.29483 -15.01200 -14.70086 -14.65643 -14.55539 -14.24475 -13.87796 -13.84097 -13.69964 -13.24456 -13.03521 -12.98701 -12.81122 -12.65902 -12.58502 -12.30537 -12.25252 -12.14813 -11.93898 -11.66553 -11.49142 -11.44736 -11.35434 -11.04883 -10.72891 -10.69405 -10.39694 -9.84081 -9.22216 -8.33790 -6.47477 0.03950 0.85540 1.13314 1.38485 1.40335 1.49011 1.73652 1.83431 2.25373 2.34021 2.58098 2.98648 3.22214 3.46375 3.58321 3.90706 3.91081 4.04544 4.16525 4.21898 4.22966 4.44955 4.59994 4.63031 4.67856 4.83644 4.83750 4.87465 4.88210 4.94802 4.98506 5.02184 5.02910 5.06501 5.12733 5.17530 5.37916 5.50119 5.55683 5.57456 5.73993 5.78083 5.84606 6.13980 6.25038 6.54437 6.63511 6.76346 6.84030 6.96082 7.22456 8.73876 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028626 B = 0.001649 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.906965 B =16970.771199 C =17387.457694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.103 3.897 6 H 0.108 0.892 7 O -0.569 6.569 8 C 0.082 3.918 9 N -0.677 5.677 10 C 0.524 3.476 11 O -0.537 6.537 12 C 0.515 3.485 13 O -0.508 6.508 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.271 3.729 20 C -0.551 4.551 21 H 0.052 0.948 22 C 0.021 3.979 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.389 0.611 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.422 0.578 42 H 0.428 0.572 43 H 0.176 0.824 44 H 0.207 0.793 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 28.366 17.146 33.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.178 4.178 5 C 0.043 3.957 6 H 0.126 0.874 7 O -0.376 6.376 8 C -0.040 4.040 9 N -0.330 5.330 10 C 0.303 3.697 11 O -0.414 6.414 12 C 0.296 3.704 13 O -0.381 6.381 14 N -0.250 5.250 15 C 0.004 3.996 16 C -0.319 4.319 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.153 3.847 20 C -0.589 4.589 21 H 0.070 0.930 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.194 1.194 28 N -0.173 5.173 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.239 0.761 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.260 0.740 42 H 0.266 0.734 43 H 0.193 0.807 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.555 27.777 16.090 32.203 hybrid contribution 0.015 -0.062 -0.563 0.566 sum 2.570 27.715 15.528 31.872 Atomic orbital electron populations 1.21933 0.95476 1.01738 1.01897 1.21006 0.95737 0.96107 0.98180 1.21843 1.01102 0.95670 1.01897 1.22245 1.02595 0.93631 0.99284 1.22200 0.98591 0.91465 0.83431 0.87392 1.86610 1.25296 1.80743 1.44977 1.22506 1.01131 0.79767 1.00643 1.45617 1.55071 1.12367 1.19962 1.19418 0.80957 0.85379 0.83971 1.90800 1.40136 1.75966 1.34529 1.20397 0.80644 0.87157 0.82167 1.90697 1.38173 1.75702 1.33500 1.42117 1.53761 1.07062 1.22073 1.19334 0.99414 0.85985 0.94890 1.21754 1.12248 0.94345 1.03551 1.23246 0.98913 0.98931 0.87666 1.48912 1.39576 1.09298 1.14347 1.19386 0.97668 0.76660 0.91005 1.21384 1.43145 0.95443 0.98971 0.92979 1.25703 0.95269 0.94399 1.02606 1.69980 1.47259 1.00846 1.37639 0.85428 0.78908 0.77772 0.78490 1.20064 1.19715 1.19447 1.77318 1.24425 0.92768 1.22762 0.92406 0.92723 0.92856 0.91154 0.92418 0.92518 0.92790 0.89910 0.90050 0.76138 0.89409 0.89743 0.73987 0.73385 0.80694 0.77614 0.95930 0.91906 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.96 71.98 0.65 -0.60 16 2 C -0.09 -0.66 2.87 -10.79 -0.03 -0.69 16 3 C -0.15 -0.97 9.19 71.98 0.66 -0.31 16 4 C -0.14 -0.75 4.36 30.60 0.13 -0.62 16 5 C 0.10 0.78 2.86 30.60 0.09 0.87 16 6 H 0.11 0.91 6.41 -2.39 -0.02 0.89 16 7 O -0.57 -5.38 12.69 -148.98 -1.89 -7.27 16 8 C 0.08 0.87 5.31 86.38 0.46 1.33 16 9 N -0.68 -10.86 5.50 -464.53 -2.55 -13.41 16 10 C 0.52 12.09 7.89 87.24 0.69 12.78 16 11 O -0.54 -14.51 16.48 -3.29 -0.05 -14.57 16 12 C 0.52 14.55 7.85 87.24 0.69 15.23 16 13 O -0.51 -15.37 13.60 -3.38 -0.05 -15.41 16 14 N -0.60 -19.49 5.43 -308.89 -1.68 -21.17 16 15 C 0.26 10.29 8.10 133.40 1.08 11.37 16 16 C -0.29 -10.73 9.60 22.11 0.21 -10.51 16 17 C 0.06 2.31 11.43 83.51 0.95 3.26 16 18 N -0.34 -15.72 3.67 -351.86 -1.29 -17.01 16 19 C 0.27 13.94 6.26 85.63 0.54 14.48 16 20 C -0.55 -31.08 9.24 25.60 0.24 -30.84 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.02 1.15 5.46 84.66 0.46 1.62 16 23 N -0.92 -51.83 13.29 21.45 0.28 -51.55 16 24 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 N -0.34 -16.02 12.42 -54.54 -0.68 -16.69 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.48 6.50 -2.39 -0.02 0.47 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 33 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.39 1.44 9.04 -74.06 -0.67 0.77 16 39 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 6.37 7.94 -92.71 -0.74 5.63 16 42 H 0.43 12.89 8.29 -92.71 -0.77 12.12 16 43 H 0.18 5.97 5.91 -2.91 -0.02 5.96 16 44 H 0.21 5.95 8.06 -2.91 -0.02 5.93 16 45 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 3.12 8.07 -2.38 -0.02 3.10 16 47 H 0.27 14.45 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.87 398.73 -0.22 -70.09 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -1.15 Total: 23.91 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.81 Total: 17.37 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.91 Total: -119.83 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.99 Total: -37.25 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.87 -0.22 -70.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754939317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.609 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds