Wall clock time and date at job start Tue Mar 31 2020 21:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46900 * 2 1 4 4 C 1.52999 * 109.47329 * 120.00207 * 2 1 3 5 5 N 1.46494 * 109.46871 * 65.00090 * 4 2 1 6 6 C 1.46507 * 119.99977 * 264.60430 * 5 4 2 7 7 C 1.50706 * 109.47181 * 264.30358 * 6 5 4 8 8 H 1.07997 * 119.99638 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00154 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99981 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46975 * 59.99923 * 11 9 7 13 13 H 1.48500 * 109.47253 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46869 * 300.00406 * 11 9 7 15 15 C 1.34774 * 120.00209 * 84.60894 * 5 4 2 16 16 O 1.21575 * 119.99898 * 4.75079 * 15 5 4 17 17 C 1.47711 * 120.00165 * 184.74694 * 15 5 4 18 18 N 1.31809 * 126.51625 * 354.49396 * 17 15 5 19 19 N 1.28475 * 110.07121 * 180.02562 * 18 17 15 20 20 H 0.96995 * 124.88339 * 179.97438 * 19 18 17 21 21 C 1.35038 * 110.22829 * 359.97438 * 19 18 17 22 22 C 1.50706 * 126.38292 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47344 * 300.02886 * 22 21 19 24 24 C 1.53000 * 109.46611 * 60.03001 * 22 21 19 25 25 C 1.35364 * 107.23234 * 0.26379 * 21 19 18 26 26 N 1.48002 * 127.25028 * 179.73624 * 25 21 19 27 27 O 1.21799 * 119.99913 * 89.99649 * 26 25 21 28 28 O 1.21802 * 119.99830 * 270.00060 * 26 25 21 29 29 H 1.09002 * 109.46567 * 299.99792 * 1 2 3 30 30 H 1.08992 * 109.47161 * 59.99767 * 1 2 3 31 31 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47367 * 240.00669 * 2 1 3 33 33 H 1.09000 * 109.46897 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47403 * 300.00084 * 3 2 1 35 35 H 1.09002 * 109.46564 * 60.00178 * 3 2 1 36 36 H 1.09000 * 109.47067 * 305.00097 * 4 2 1 37 37 H 1.09000 * 109.46771 * 185.00217 * 4 2 1 38 38 H 1.09002 * 109.46975 * 24.30317 * 6 5 4 39 39 H 1.08996 * 109.46684 * 144.30430 * 6 5 4 40 40 H 0.97008 * 120.00047 * 179.97438 * 10 9 7 41 41 H 1.08999 * 109.46750 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.47153 * 59.99690 * 23 22 21 43 43 H 1.08998 * 109.47128 * 299.99893 * 23 22 21 44 44 H 1.09000 * 109.47308 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47015 * 299.99776 * 24 22 21 46 46 H 1.08998 * 109.47302 * 59.99912 * 24 22 21 47 47 H 1.09000 * 109.46917 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1904 6 6 0.4328 -2.5862 1.8635 7 6 0.7822 -3.1263 3.2263 8 1 1.8099 -3.1309 3.5581 9 6 -0.2104 -3.6135 4.0499 10 7 -1.4620 -3.6073 3.6461 11 14 0.2225 -4.2823 5.7396 12 1 0.8648 -3.2132 6.5454 13 1 -1.0139 -4.7420 6.4217 14 1 1.1609 -5.4241 5.5944 15 6 2.4181 -3.0144 0.5173 16 8 3.4739 -2.6564 0.0322 17 6 1.9745 -4.4155 0.3689 18 7 0.9124 -4.9648 0.9234 19 7 0.8264 -6.2005 0.5826 20 1 0.1263 -6.8076 0.8692 21 6 1.8510 -6.5326 -0.2320 22 6 2.1038 -7.8863 -0.8441 23 6 2.2839 -8.9228 0.2668 24 6 0.9132 -8.2799 -1.7207 25 6 2.6121 -5.4246 -0.3911 26 7 3.8492 -5.2951 -1.1932 27 8 3.7840 -4.9683 -2.3647 28 8 4.9325 -5.5155 -0.6817 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2950 38 1 -0.2561 -1.7482 1.9704 39 1 -0.0385 -3.3708 1.2716 40 1 -2.1603 -3.9504 4.2254 41 1 3.0065 -7.8465 -1.4538 42 1 1.3812 -8.9626 0.8765 43 1 3.1321 -8.6424 0.8913 44 1 2.4664 -9.9020 -0.1759 45 1 0.0105 -8.3197 -1.1110 46 1 0.7849 -7.5415 -2.5122 47 1 1.0958 -9.2593 -2.1631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771346671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:00 Heat of formation + Delta-G solvation = 26.013865 kcal Electronic energy + Delta-G solvation = -31445.087819 eV Core-core repulsion = 27247.024741 eV Total energy + Delta-G solvation = -4198.063078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17215 -41.39927 -39.21190 -36.21087 -36.10797 -36.09017 -34.10248 -32.39650 -32.24120 -30.40089 -27.65785 -27.58072 -26.81138 -26.45193 -25.96807 -23.90803 -22.91991 -22.20233 -21.15465 -20.03753 -18.58773 -18.43243 -18.38872 -17.31223 -16.75778 -16.57328 -16.20766 -15.77198 -15.69620 -15.01717 -14.56597 -14.53275 -14.44301 -14.10505 -13.56769 -13.23884 -12.98780 -12.61854 -12.50314 -12.33296 -12.13885 -11.88255 -11.82632 -11.64674 -11.50424 -11.40826 -11.30040 -11.13716 -11.06331 -10.95356 -10.84182 -10.73656 -10.62616 -10.35552 -10.28175 -9.95585 -9.77339 -9.71466 -9.55584 -9.33609 -8.51852 -7.81415 -6.17893 -4.21063 0.92607 1.42291 1.59273 1.72823 2.79018 3.18764 3.23534 3.27974 3.53370 3.69690 4.05752 4.28345 4.30269 4.53515 4.63422 4.87380 4.94798 5.06882 5.16656 5.19164 5.24902 5.27481 5.39091 5.43738 5.47901 5.56962 5.65248 5.77579 5.84255 5.87424 5.94297 5.99365 6.15019 6.22653 6.31661 6.38821 6.55589 6.64967 6.69745 6.71272 6.76251 7.26521 7.49820 7.70410 7.80158 8.00884 8.08043 8.14307 8.68004 8.85331 9.42647 10.89289 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.005715 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.247148 B = 4898.153922 C = 7180.780728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.570 5.570 6 C 0.224 3.776 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.071 3.929 10 N -0.890 5.890 11 Si 0.888 3.112 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.589 3.411 16 O -0.556 6.556 17 C 0.047 3.953 18 N -0.153 5.153 19 N -0.366 5.366 20 H 0.456 0.544 21 C 0.082 3.918 22 C -0.036 4.036 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.108 4.108 26 N 0.066 4.934 27 O -0.141 6.141 28 O -0.135 6.135 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.262 0.738 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -6.304 -8.168 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.299 5.299 6 C 0.105 3.895 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.716 3.284 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.374 3.626 16 O -0.435 6.435 17 C -0.116 4.116 18 N 0.013 4.987 19 N -0.080 5.080 20 H 0.303 0.697 21 C -0.048 4.048 22 C -0.057 4.057 23 C -0.207 4.207 24 C -0.206 4.206 25 C -0.202 4.202 26 N 0.598 4.402 27 O -0.363 6.363 28 O -0.359 6.359 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.478 -5.926 -7.200 9.338 hybrid contribution 0.610 -0.868 0.720 1.282 sum 0.132 -6.795 -6.480 9.390 Atomic orbital electron populations 1.21870 0.94918 1.02426 1.01016 1.21501 0.96402 0.96066 0.99201 1.21739 1.00932 0.95679 1.01505 1.21484 1.00411 0.80307 0.97638 1.48107 1.26188 1.07006 1.48586 1.19999 0.80367 0.96566 0.92592 1.21315 0.93864 1.40927 0.99706 0.92733 1.24780 0.94809 0.95657 0.97924 1.69917 0.99504 1.46471 1.36971 0.86722 0.77612 0.79560 0.84498 1.20127 1.21205 1.20514 1.16773 0.83918 0.82307 0.79630 1.90784 1.22907 1.78430 1.51360 1.21927 0.94038 0.96077 0.99590 1.74976 1.16978 0.90944 1.15753 1.43592 1.21064 1.09614 1.33746 0.69723 1.20756 0.90720 0.95973 0.97315 1.19987 1.01026 0.87560 0.97077 1.21904 1.02949 0.98214 0.97681 1.21897 0.96432 1.02594 0.99716 1.20427 0.93791 0.96822 1.09132 1.42111 1.00915 0.97110 1.00080 1.94512 1.93770 1.48259 0.99805 1.94530 1.14769 1.52100 1.74489 0.92570 0.93486 0.92004 0.91193 0.92687 0.92839 0.92645 0.89835 0.90851 0.94117 0.91508 0.92806 0.88827 0.92087 0.91437 0.90806 0.92110 0.91501 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.35 37.16 0.31 -1.96 16 2 C -0.11 -1.81 3.09 -90.61 -0.28 -2.09 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 4 C 0.12 2.32 4.80 -4.05 -0.02 2.30 16 5 N -0.57 -12.27 2.21 -176.22 -0.39 -12.66 16 6 C 0.22 5.22 3.68 -5.19 -0.02 5.20 16 7 C -0.52 -13.26 8.61 -34.44 -0.30 -13.56 16 8 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 11 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 C 0.59 13.36 7.59 -12.39 -0.09 13.26 16 16 O -0.56 -13.54 16.12 5.30 0.09 -13.45 16 17 C 0.05 0.98 6.83 -82.76 -0.57 0.42 16 18 N -0.15 -3.00 8.15 33.42 0.27 -2.72 16 19 N -0.37 -5.38 6.83 33.50 0.23 -5.15 16 20 H 0.46 5.00 8.96 -190.44 -1.71 3.30 16 21 C 0.08 1.18 5.74 -82.20 -0.47 0.71 16 22 C -0.04 -0.37 3.34 -91.77 -0.31 -0.68 16 23 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 24 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 25 C -0.11 -2.02 6.75 -79.74 -0.54 -2.56 16 26 N 0.07 1.29 3.78 34.07 0.13 1.42 16 27 O -0.14 -2.76 19.25 -29.46 -0.57 -3.33 16 28 O -0.13 -2.71 19.25 -29.46 -0.57 -3.28 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.09 6.41 -51.93 -0.33 0.76 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 37 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 38 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 39 H 0.07 1.61 5.22 -51.93 -0.27 1.33 16 40 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 41 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -31.27 396.30 -8.98 -40.25 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.51 Total: 0.81 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.35 Total: -0.53 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.98 Total: -41.70 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.05 Total: -20.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.27 -8.98 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771346671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.263 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds