Wall clock time and date at job start Tue Mar 31 2020 21:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46900 * 2 1 4 4 C 1.52999 * 109.47329 * 120.00207 * 2 1 3 5 5 N 1.46494 * 109.46871 * 65.00090 * 4 2 1 6 6 C 1.46507 * 119.99977 * 264.60430 * 5 4 2 7 7 C 1.50706 * 109.47181 * 264.30358 * 6 5 4 8 8 H 1.07997 * 119.99638 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00154 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99981 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46975 * 59.99923 * 11 9 7 13 13 H 1.48500 * 109.47253 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46869 * 300.00406 * 11 9 7 15 15 C 1.34774 * 120.00209 * 84.60894 * 5 4 2 16 16 O 1.21575 * 119.99898 * 4.75079 * 15 5 4 17 17 C 1.47711 * 120.00165 * 184.74694 * 15 5 4 18 18 N 1.31809 * 126.51625 * 354.49396 * 17 15 5 19 19 N 1.28475 * 110.07121 * 180.02562 * 18 17 15 20 20 H 0.96995 * 124.88339 * 179.97438 * 19 18 17 21 21 C 1.35038 * 110.22829 * 359.97438 * 19 18 17 22 22 C 1.50706 * 126.38292 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47344 * 300.02886 * 22 21 19 24 24 C 1.53000 * 109.46611 * 60.03001 * 22 21 19 25 25 C 1.35364 * 107.23234 * 0.26379 * 21 19 18 26 26 N 1.48002 * 127.25028 * 179.73624 * 25 21 19 27 27 O 1.21799 * 119.99913 * 89.99649 * 26 25 21 28 28 O 1.21802 * 119.99830 * 270.00060 * 26 25 21 29 29 H 1.09002 * 109.46567 * 299.99792 * 1 2 3 30 30 H 1.08992 * 109.47161 * 59.99767 * 1 2 3 31 31 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47367 * 240.00669 * 2 1 3 33 33 H 1.09000 * 109.46897 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47403 * 300.00084 * 3 2 1 35 35 H 1.09002 * 109.46564 * 60.00178 * 3 2 1 36 36 H 1.09000 * 109.47067 * 305.00097 * 4 2 1 37 37 H 1.09000 * 109.46771 * 185.00217 * 4 2 1 38 38 H 1.09002 * 109.46975 * 24.30317 * 6 5 4 39 39 H 1.08996 * 109.46684 * 144.30430 * 6 5 4 40 40 H 0.97008 * 120.00047 * 179.97438 * 10 9 7 41 41 H 1.08999 * 109.46750 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.47153 * 59.99690 * 23 22 21 43 43 H 1.08998 * 109.47128 * 299.99893 * 23 22 21 44 44 H 1.09000 * 109.47308 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47015 * 299.99776 * 24 22 21 46 46 H 1.08998 * 109.47302 * 59.99912 * 24 22 21 47 47 H 1.09000 * 109.46917 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1904 6 6 0.4328 -2.5862 1.8635 7 6 0.7822 -3.1263 3.2263 8 1 1.8099 -3.1309 3.5581 9 6 -0.2104 -3.6135 4.0499 10 7 -1.4620 -3.6073 3.6461 11 14 0.2225 -4.2823 5.7396 12 1 0.8648 -3.2132 6.5454 13 1 -1.0139 -4.7420 6.4217 14 1 1.1609 -5.4241 5.5944 15 6 2.4181 -3.0144 0.5173 16 8 3.4739 -2.6564 0.0322 17 6 1.9745 -4.4155 0.3689 18 7 0.9124 -4.9648 0.9234 19 7 0.8264 -6.2005 0.5826 20 1 0.1263 -6.8076 0.8692 21 6 1.8510 -6.5326 -0.2320 22 6 2.1038 -7.8863 -0.8441 23 6 2.2839 -8.9228 0.2668 24 6 0.9132 -8.2799 -1.7207 25 6 2.6121 -5.4246 -0.3911 26 7 3.8492 -5.2951 -1.1932 27 8 3.7840 -4.9683 -2.3647 28 8 4.9325 -5.5155 -0.6817 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2950 38 1 -0.2561 -1.7482 1.9704 39 1 -0.0385 -3.3708 1.2716 40 1 -2.1603 -3.9504 4.2254 41 1 3.0065 -7.8465 -1.4538 42 1 1.3812 -8.9626 0.8765 43 1 3.1321 -8.6424 0.8913 44 1 2.4664 -9.9020 -0.1759 45 1 0.0105 -8.3197 -1.1110 46 1 0.7849 -7.5415 -2.5122 47 1 1.0958 -9.2593 -2.1631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771346671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:59 Heat of formation + Delta-G solvation = 8.939240 kcal Electronic energy + Delta-G solvation = -31445.828230 eV Core-core repulsion = 27247.024741 eV Total energy + Delta-G solvation = -4198.803489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.57141 -42.93309 -40.90713 -37.77186 -37.65091 -37.07442 -35.72797 -34.24257 -33.69828 -31.69855 -29.47890 -28.21846 -28.02835 -27.96460 -27.48694 -25.51207 -24.48786 -23.53759 -22.50696 -21.37590 -19.99443 -19.98453 -19.94037 -18.78680 -18.61103 -18.06750 -17.65765 -17.29307 -17.22114 -16.41124 -16.05499 -16.03604 -15.87686 -15.09662 -14.77392 -14.63630 -14.22181 -14.20392 -13.84657 -13.74001 -13.18997 -13.11881 -13.01060 -12.88588 -12.87044 -12.72644 -12.66217 -12.54496 -12.37705 -12.32200 -12.30357 -12.19540 -12.16440 -11.99126 -11.73785 -11.62418 -11.50680 -11.33317 -11.15494 -10.72486 -10.46060 -9.57289 -8.15305 -6.24485 -0.63827 0.04587 0.15568 0.23355 1.35902 1.39255 1.45112 1.50190 1.96988 2.02824 2.40403 2.91918 3.04463 3.16031 3.25653 3.57584 3.85751 3.89188 3.92503 3.96372 4.06347 4.13728 4.21880 4.53096 4.61595 4.62944 4.74582 4.76738 4.79346 4.83186 4.90344 4.91352 4.97988 5.02069 5.12234 5.15674 5.17864 5.20835 5.31983 5.37641 5.41387 5.53344 5.72390 5.78638 6.12456 6.28816 6.37956 6.44003 6.80487 7.00066 7.41884 8.90800 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.005715 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.247148 B = 4898.153922 C = 7180.780728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.570 5.570 6 C 0.241 3.759 7 C -0.528 4.528 8 H 0.034 0.966 9 C 0.040 3.960 10 N -0.907 5.907 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.280 1.280 15 C 0.579 3.421 16 O -0.583 6.583 17 C 0.020 3.980 18 N -0.176 5.176 19 N -0.347 5.347 20 H 0.473 0.527 21 C 0.121 3.879 22 C -0.036 4.036 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.141 4.141 26 N 0.069 4.931 27 O -0.140 6.140 28 O -0.155 6.155 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -7.734 -8.190 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.192 4.192 4 C -0.003 4.003 5 N -0.297 5.297 6 C 0.121 3.879 7 C -0.567 4.567 8 H 0.052 0.948 9 C -0.161 4.161 10 N -0.546 5.546 11 Si 0.765 3.235 12 H -0.205 1.205 13 H -0.201 1.201 14 H -0.206 1.206 15 C 0.365 3.635 16 O -0.465 6.465 17 C -0.143 4.143 18 N -0.010 5.010 19 N -0.064 5.064 20 H 0.324 0.676 21 C -0.010 4.010 22 C -0.056 4.056 23 C -0.206 4.206 24 C -0.204 4.204 25 C -0.235 4.235 26 N 0.599 4.401 27 O -0.365 6.365 28 O -0.375 6.375 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.626 -7.362 -7.188 10.417 hybrid contribution 0.940 -0.472 0.691 1.258 sum -0.686 -7.835 -6.497 10.201 Atomic orbital electron populations 1.21808 0.94336 1.01121 1.02352 1.21426 0.96769 0.97538 0.96713 1.21698 1.00965 0.93448 1.03050 1.21689 1.00053 0.79329 0.99277 1.48146 1.25528 1.08062 1.48009 1.19691 0.80634 0.95845 0.91747 1.21338 0.92921 1.41581 1.00866 0.94780 1.25268 0.94709 0.95704 1.00393 1.69978 0.99969 1.46741 1.37918 0.85936 0.77563 0.78750 0.81245 1.20457 1.20141 1.20628 1.17106 0.83692 0.83319 0.79377 1.90742 1.23926 1.79223 1.52577 1.21766 0.95359 0.95830 1.01314 1.74820 1.16871 0.92902 1.16443 1.43587 1.21356 1.08551 1.32890 0.67573 1.21382 0.88432 0.96492 0.94678 1.20265 1.02048 0.85411 0.97881 1.21947 1.02955 0.98689 0.96993 1.21936 0.95673 1.03603 0.99145 1.20588 0.94322 0.97935 1.10625 1.42200 1.01186 0.96639 1.00049 1.94483 1.93891 1.47902 1.00228 1.94515 1.15457 1.52991 1.74584 0.92107 0.91196 0.94596 0.93267 0.92657 0.90957 0.91395 0.89463 0.91674 0.95151 0.91949 0.92498 0.89440 0.90690 0.93164 0.87987 0.90580 0.92624 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 8.35 71.98 0.60 -3.71 16 2 C -0.10 -3.41 3.09 -10.79 -0.03 -3.44 16 3 C -0.13 -3.35 9.19 71.98 0.66 -2.69 16 4 C 0.12 4.56 4.80 86.38 0.41 4.97 16 5 N -0.57 -25.43 2.21 -829.71 -1.83 -27.27 16 6 C 0.24 11.49 3.68 85.63 0.32 11.80 16 7 C -0.53 -27.37 8.61 25.60 0.22 -27.15 16 8 H 0.03 1.88 7.81 -2.91 -0.02 1.85 16 9 C 0.04 2.04 5.46 84.65 0.46 2.50 16 10 N -0.91 -47.05 13.29 21.44 0.28 -46.77 16 11 Si 0.94 41.13 29.54 68.60 2.03 43.16 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.58 27.39 7.59 86.75 0.66 28.05 16 16 O -0.58 -29.72 16.12 -3.95 -0.06 -29.78 16 17 C 0.02 0.87 6.83 42.46 0.29 1.16 16 18 N -0.18 -6.94 8.15 -48.17 -0.39 -7.34 16 19 N -0.35 -9.83 6.83 -47.92 -0.33 -10.15 16 20 H 0.47 9.38 8.96 -219.99 -1.97 7.41 16 21 C 0.12 3.36 5.74 41.40 0.24 3.59 16 22 C -0.04 -0.66 3.34 -11.54 -0.04 -0.69 16 23 C -0.15 -2.08 9.18 71.98 0.66 -1.42 16 24 C -0.15 -1.84 9.18 71.98 0.66 -1.18 16 25 C -0.14 -5.34 6.75 36.52 0.25 -5.09 16 26 N 0.07 2.75 3.78 -46.14 -0.17 2.58 16 27 O -0.14 -5.59 19.25 18.89 0.36 -5.23 16 28 O -0.16 -6.43 19.25 18.88 0.36 -6.07 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.28 6.41 -2.39 -0.02 1.27 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 37 H 0.06 2.58 7.52 -2.39 -0.02 2.56 16 38 H 0.03 1.50 6.85 -2.39 -0.02 1.49 16 39 H 0.06 3.07 5.22 -2.39 -0.01 3.06 16 40 H 0.27 13.13 8.31 -92.70 -0.77 12.36 16 41 H 0.09 1.78 7.95 -2.39 -0.02 1.76 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.19 396.30 4.63 -64.57 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.98 Total: 15.59 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.36 Total: 6.70 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -2.44 Total: -88.94 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: 0.66 Total: -41.07 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -69.19 4.63 -64.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771346671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.505 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds