Wall clock time and date at job start Tue Mar 31 2020 20:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47554 * 120.00117 * 2 1 3 5 5 N 1.31139 * 126.54962 * 119.99884 * 4 2 1 6 6 C 1.34501 * 105.61141 * 180.02562 * 5 4 2 7 7 C 1.50707 * 126.28230 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.50685 * 345.09004 * 7 6 5 9 9 C 1.53095 * 109.50285 * 105.22180 * 7 6 5 10 10 O 1.43017 * 109.25303 * 176.78248 * 9 7 6 11 11 C 1.43019 * 113.73981 * 301.32702 * 10 9 7 12 12 C 1.53097 * 109.25522 * 58.67320 * 11 10 9 13 13 N 1.47008 * 109.50168 * 225.00140 * 7 6 5 14 14 C 1.46901 * 111.00061 * 57.67903 * 13 7 6 15 15 C 1.50700 * 109.47423 * 64.50886 * 14 13 7 16 16 O 1.21278 * 119.99617 * 354.33255 * 15 14 13 17 17 N 1.34772 * 120.00128 * 174.33821 * 15 14 13 18 18 C 1.46497 * 120.00138 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47486 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00031 * 179.72410 * 19 18 17 22 22 N 1.31513 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47084 * 89.99969 * 23 21 19 25 25 H 1.48497 * 109.47147 * 209.99795 * 23 21 19 26 26 H 1.48500 * 109.47163 * 330.00167 * 23 21 19 27 27 N 1.29942 * 107.42409 * 0.24809 * 6 5 4 28 28 O 1.21299 * 110.25131 * 359.57454 * 27 6 5 29 29 H 1.09000 * 109.46925 * 299.99159 * 1 2 3 30 30 H 1.08995 * 109.47481 * 59.99830 * 1 2 3 31 31 H 1.09003 * 109.46435 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00841 * 2 1 3 33 33 H 1.09008 * 109.46830 * 60.00422 * 3 2 1 34 34 H 1.09001 * 109.47323 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47483 * 300.00787 * 3 2 1 36 36 H 1.08996 * 109.51045 * 296.71521 * 9 7 6 37 37 H 1.09002 * 109.50850 * 56.84558 * 9 7 6 38 38 H 1.08996 * 109.50433 * 178.60903 * 11 10 9 39 39 H 1.09003 * 109.50488 * 298.69517 * 11 10 9 40 40 H 1.09000 * 109.50331 * 183.21908 * 12 11 10 41 41 H 1.08993 * 109.50565 * 63.08644 * 12 11 10 42 42 H 1.08995 * 109.47320 * 304.50435 * 14 13 7 43 43 H 1.09005 * 109.47153 * 184.50843 * 14 13 7 44 44 H 0.97000 * 120.00012 * 359.97438 * 17 15 14 45 45 H 1.09001 * 109.47278 * 59.99527 * 18 17 15 46 46 H 1.08998 * 109.47286 * 300.00047 * 18 17 15 47 47 H 0.97001 * 120.00121 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7894 -1.7808 1.2597 6 6 2.9812 -2.0529 2.5629 7 6 3.7876 -3.1946 3.1263 8 1 3.9808 -3.9259 2.3414 9 6 5.1166 -2.6627 3.6692 10 8 5.8447 -3.7373 4.2695 11 6 5.1446 -4.3813 5.3375 12 6 3.8159 -4.9305 4.8115 13 7 3.0383 -3.8328 4.2183 14 6 1.7291 -4.3078 3.7511 15 6 1.9255 -5.3939 2.7250 16 8 3.0417 -5.6675 2.3378 17 7 0.8607 -6.0610 2.2376 18 6 1.0516 -7.1164 1.2397 19 6 -0.2860 -7.7000 0.8635 20 1 -1.1881 -7.3221 1.3215 21 6 -0.3586 -8.7119 -0.0701 22 7 0.7394 -9.1684 -0.6319 23 14 -2.0166 -9.4347 -0.5371 24 1 -2.5829 -8.6759 -1.6811 25 1 -1.8449 -10.8582 -0.9237 26 1 -2.9401 -9.3446 0.6224 27 7 2.3386 -1.1540 3.2467 28 8 1.7912 -0.3704 2.5000 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 5.7004 -2.2394 2.8519 37 1 4.9226 -1.8925 4.4157 38 1 5.7487 -5.2008 5.7267 39 1 4.9522 -3.6612 6.1330 40 1 3.2533 -5.3719 5.6342 41 1 4.0103 -5.6897 4.0540 42 1 1.1808 -3.4792 3.3028 43 1 1.1637 -4.7032 4.5950 44 1 -0.0321 -5.8423 2.5476 45 1 1.6852 -7.8997 1.6559 46 1 1.5276 -6.6968 0.3535 47 1 0.6883 -9.8801 -1.2890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779630508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:14 Heat of formation + Delta-G solvation = -4.889745 kcal Electronic energy + Delta-G solvation = -30684.744569 eV Core-core repulsion = 26485.341410 eV Total energy + Delta-G solvation = -4199.403159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.64822 -40.35192 -38.44044 -36.53810 -36.11611 -35.07969 -34.15062 -32.43336 -32.14521 -30.59415 -29.51382 -27.59492 -27.25181 -25.29930 -24.76086 -24.42762 -23.09000 -22.43244 -21.28199 -20.06983 -19.56388 -18.17772 -17.63749 -17.10117 -16.48937 -16.38196 -16.10410 -15.87898 -15.22776 -15.12912 -15.10963 -14.64236 -14.53997 -14.43160 -14.13768 -13.68777 -13.36009 -12.84268 -12.74060 -12.61288 -12.50855 -12.36226 -12.07640 -12.00665 -11.89778 -11.78690 -11.65024 -11.42101 -11.39717 -11.10783 -11.03618 -10.97090 -10.78520 -10.69034 -10.38862 -10.07463 -9.92910 -9.60277 -9.44992 -8.78539 -8.04591 -7.96481 -6.20870 -4.28487 1.11056 2.16142 2.71555 3.14562 3.20750 3.26942 3.29326 3.30740 3.62678 3.95804 3.98935 4.06889 4.32523 4.50096 4.59752 4.69555 4.81765 4.96350 5.01372 5.14419 5.15138 5.21337 5.22751 5.28531 5.36908 5.41760 5.44342 5.46591 5.49740 5.52040 5.55709 5.66426 5.75815 5.79898 5.85118 5.93435 6.08492 6.19194 6.70189 6.78735 7.05942 7.22572 7.33664 7.45067 7.59052 7.91273 8.17608 8.50356 8.69397 8.96458 9.38083 10.89169 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.003808 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.609509 B = 7350.707293 C = 9857.341615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.000 4.000 3 C -0.150 4.150 4 C 0.178 3.822 5 N -0.469 5.469 6 C 0.180 3.820 7 C 0.120 3.880 8 H 0.122 0.878 9 C 0.082 3.918 10 O -0.374 6.374 11 C 0.066 3.934 12 C -0.001 4.001 13 N -0.502 5.502 14 C 0.031 3.969 15 C 0.467 3.533 16 O -0.550 6.550 17 N -0.706 5.706 18 C 0.250 3.750 19 C -0.545 4.545 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.362 5.362 28 O 0.078 5.922 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.390 0.610 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 20.180 6.824 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 C -0.208 4.208 4 C -0.043 4.043 5 N -0.201 5.201 6 C -0.093 4.093 7 C 0.010 3.990 8 H 0.139 0.861 9 C 0.003 3.997 10 O -0.292 6.292 11 C -0.011 4.011 12 C -0.129 4.129 13 N -0.226 5.226 14 C -0.101 4.101 15 C 0.251 3.749 16 O -0.431 6.431 17 N -0.354 5.354 18 C 0.129 3.871 19 C -0.584 4.584 20 H 0.080 0.920 21 C -0.139 4.139 22 N -0.521 5.521 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.197 1.197 27 N -0.068 5.068 28 O 0.017 5.983 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.223 0.777 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.464 19.763 7.437 21.398 hybrid contribution -1.718 -0.894 -0.843 2.112 sum 1.746 18.869 6.594 20.064 Atomic orbital electron populations 1.21921 0.92061 1.03529 1.03489 1.19855 0.97138 0.95720 0.89340 1.21908 1.01865 0.93454 1.03534 1.28869 0.94284 0.92263 0.88888 1.71992 1.16457 1.12795 1.18894 1.25449 0.99860 0.98437 0.85571 1.20904 0.91338 0.91355 0.95401 0.86053 1.22532 0.90220 0.89226 0.97690 1.88024 1.42158 1.48611 1.50412 1.22692 0.92289 0.97084 0.89066 1.23128 0.94771 0.94105 1.00848 1.62642 1.02840 1.28680 1.28442 1.22283 0.92862 0.96856 0.98075 1.21584 0.85838 0.83865 0.83584 1.90561 1.23689 1.67723 1.61077 1.46591 1.08211 1.37617 1.42970 1.19115 0.97373 0.84460 0.86147 1.21207 0.92317 1.20004 1.24833 0.91965 1.24947 0.97145 0.96243 0.95576 1.69972 1.27279 1.27481 1.27412 0.86418 0.83239 0.78419 0.78866 1.20416 1.20925 1.19731 1.74716 1.11798 1.03555 1.16726 1.85291 1.54590 1.42879 1.15530 0.91492 0.90402 0.91524 0.86542 0.91499 0.91869 0.90442 0.88297 0.92271 0.88127 0.92547 0.89571 0.89428 0.89175 0.87601 0.77728 0.95524 0.95522 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.18 37.16 0.34 -0.74 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 4 C 0.18 2.19 7.02 -13.06 -0.09 2.10 16 5 N -0.47 -7.38 11.55 -9.87 -0.11 -7.49 16 6 C 0.18 2.84 5.43 -156.37 -0.85 2.00 16 7 C 0.12 1.95 2.19 -68.75 -0.15 1.80 16 8 H 0.12 2.41 5.60 -51.93 -0.29 2.12 16 9 C 0.08 1.16 6.27 37.21 0.23 1.39 16 10 O -0.37 -5.58 10.83 -35.23 -0.38 -5.96 16 11 C 0.07 0.82 7.01 37.21 0.26 1.09 16 12 C 0.00 -0.02 5.25 -3.71 -0.02 -0.04 16 13 N -0.50 -7.68 4.73 -229.16 -1.08 -8.77 16 14 C 0.03 0.49 5.63 -4.98 -0.03 0.46 16 15 C 0.47 9.32 7.20 -10.99 -0.08 9.24 16 16 O -0.55 -12.71 11.59 5.56 0.06 -12.65 16 17 N -0.71 -14.95 5.55 -61.47 -0.34 -15.29 16 18 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 19 C -0.55 -14.81 9.28 -34.44 -0.32 -15.13 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.88 -26.06 13.29 55.43 0.74 -25.32 16 23 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 N -0.36 -5.38 11.96 30.90 0.37 -5.01 16 28 O 0.08 1.00 11.31 18.12 0.20 1.21 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.57 5.55 -51.93 -0.29 1.28 16 42 H 0.09 1.43 6.71 -51.93 -0.35 1.08 16 43 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -33.62 383.79 -7.72 -41.34 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.14 Total: 6.76 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.80 Total: 9.63 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.43 Total: -61.88 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.11 Total: -17.40 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.62 -7.72 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779630508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.450 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds