Wall clock time and date at job start Tue Mar 31 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47554 * 120.00117 * 2 1 3 5 5 N 1.31139 * 126.54962 * 119.99884 * 4 2 1 6 6 C 1.34501 * 105.61141 * 180.02562 * 5 4 2 7 7 C 1.50707 * 126.28230 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.50685 * 345.09004 * 7 6 5 9 9 C 1.53095 * 109.50285 * 105.22180 * 7 6 5 10 10 O 1.43017 * 109.25303 * 176.78248 * 9 7 6 11 11 C 1.43019 * 113.73981 * 301.32702 * 10 9 7 12 12 C 1.53097 * 109.25522 * 58.67320 * 11 10 9 13 13 N 1.47008 * 109.50168 * 225.00140 * 7 6 5 14 14 C 1.46901 * 111.00061 * 57.67903 * 13 7 6 15 15 C 1.50700 * 109.47423 * 64.50886 * 14 13 7 16 16 O 1.21278 * 119.99617 * 354.33255 * 15 14 13 17 17 N 1.34772 * 120.00128 * 174.33821 * 15 14 13 18 18 C 1.46497 * 120.00138 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47486 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00031 * 179.72410 * 19 18 17 22 22 N 1.31513 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47084 * 89.99969 * 23 21 19 25 25 H 1.48497 * 109.47147 * 209.99795 * 23 21 19 26 26 H 1.48500 * 109.47163 * 330.00167 * 23 21 19 27 27 N 1.29942 * 107.42409 * 0.24809 * 6 5 4 28 28 O 1.21299 * 110.25131 * 359.57454 * 27 6 5 29 29 H 1.09000 * 109.46925 * 299.99159 * 1 2 3 30 30 H 1.08995 * 109.47481 * 59.99830 * 1 2 3 31 31 H 1.09003 * 109.46435 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00841 * 2 1 3 33 33 H 1.09008 * 109.46830 * 60.00422 * 3 2 1 34 34 H 1.09001 * 109.47323 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47483 * 300.00787 * 3 2 1 36 36 H 1.08996 * 109.51045 * 296.71521 * 9 7 6 37 37 H 1.09002 * 109.50850 * 56.84558 * 9 7 6 38 38 H 1.08996 * 109.50433 * 178.60903 * 11 10 9 39 39 H 1.09003 * 109.50488 * 298.69517 * 11 10 9 40 40 H 1.09000 * 109.50331 * 183.21908 * 12 11 10 41 41 H 1.08993 * 109.50565 * 63.08644 * 12 11 10 42 42 H 1.08995 * 109.47320 * 304.50435 * 14 13 7 43 43 H 1.09005 * 109.47153 * 184.50843 * 14 13 7 44 44 H 0.97000 * 120.00012 * 359.97438 * 17 15 14 45 45 H 1.09001 * 109.47278 * 59.99527 * 18 17 15 46 46 H 1.08998 * 109.47286 * 300.00047 * 18 17 15 47 47 H 0.97001 * 120.00121 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7894 -1.7808 1.2597 6 6 2.9812 -2.0529 2.5629 7 6 3.7876 -3.1946 3.1263 8 1 3.9808 -3.9259 2.3414 9 6 5.1166 -2.6627 3.6692 10 8 5.8447 -3.7373 4.2695 11 6 5.1446 -4.3813 5.3375 12 6 3.8159 -4.9305 4.8115 13 7 3.0383 -3.8328 4.2183 14 6 1.7291 -4.3078 3.7511 15 6 1.9255 -5.3939 2.7250 16 8 3.0417 -5.6675 2.3378 17 7 0.8607 -6.0610 2.2376 18 6 1.0516 -7.1164 1.2397 19 6 -0.2860 -7.7000 0.8635 20 1 -1.1881 -7.3221 1.3215 21 6 -0.3586 -8.7119 -0.0701 22 7 0.7394 -9.1684 -0.6319 23 14 -2.0166 -9.4347 -0.5371 24 1 -2.5829 -8.6759 -1.6811 25 1 -1.8449 -10.8582 -0.9237 26 1 -2.9401 -9.3446 0.6224 27 7 2.3386 -1.1540 3.2467 28 8 1.7912 -0.3704 2.5000 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 5.7004 -2.2394 2.8519 37 1 4.9226 -1.8925 4.4157 38 1 5.7487 -5.2008 5.7267 39 1 4.9522 -3.6612 6.1330 40 1 3.2533 -5.3719 5.6342 41 1 4.0103 -5.6897 4.0540 42 1 1.1808 -3.4792 3.3028 43 1 1.1637 -4.7032 4.5950 44 1 -0.0321 -5.8423 2.5476 45 1 1.6852 -7.8997 1.6559 46 1 1.5276 -6.6968 0.3535 47 1 0.6883 -9.8801 -1.2890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779630508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:13 Heat of formation + Delta-G solvation = -33.528203 kcal Electronic energy + Delta-G solvation = -30685.986426 eV Core-core repulsion = 26485.341410 eV Total energy + Delta-G solvation = -4200.645016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.75918 -41.73727 -39.89808 -37.47310 -37.17722 -36.44766 -35.87177 -34.46198 -33.22042 -31.68057 -30.98178 -29.10510 -28.10686 -26.53041 -26.14377 -25.37998 -24.39990 -24.10807 -22.29998 -21.69076 -20.81642 -19.30321 -19.09280 -18.50984 -17.75459 -17.68478 -17.57306 -17.00240 -16.91131 -16.35392 -16.26712 -16.18642 -16.10518 -15.58274 -15.25552 -14.80773 -14.38651 -14.27956 -14.24720 -13.98120 -13.79420 -13.63265 -13.20333 -13.06915 -13.02127 -12.95489 -12.76794 -12.75033 -12.59908 -12.28913 -12.28071 -12.24955 -12.13399 -11.91002 -11.78525 -11.58744 -11.52864 -11.11715 -10.84869 -10.73952 -9.92844 -9.47493 -8.33747 -6.51582 0.06254 1.02224 1.39738 1.42145 1.52259 1.53654 1.76336 2.19477 2.25089 2.45134 2.46954 2.89948 2.98061 3.00917 3.58706 3.72100 3.78858 3.80041 3.89481 4.00679 4.04326 4.05231 4.18248 4.28241 4.31149 4.36216 4.47871 4.57362 4.65858 4.75979 4.78674 4.82102 4.90627 4.94304 4.96655 5.02919 5.07903 5.15442 5.30915 5.32689 5.39296 5.45528 5.55697 5.60090 5.78235 5.98057 6.57966 6.73728 7.09064 7.16448 7.33209 8.78234 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.003808 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.609509 B = 7350.707293 C = 9857.341615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.194 3.806 5 N -0.512 5.512 6 C 0.168 3.832 7 C 0.122 3.878 8 H 0.079 0.921 9 C 0.087 3.913 10 O -0.392 6.392 11 C 0.065 3.935 12 C -0.002 4.002 13 N -0.491 5.491 14 C 0.045 3.955 15 C 0.465 3.535 16 O -0.583 6.583 17 N -0.703 5.703 18 C 0.271 3.729 19 C -0.559 4.559 20 H 0.083 0.917 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.985 3.015 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.255 1.255 27 N -0.366 5.366 28 O 0.088 5.912 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.141 0.859 44 H 0.407 0.593 45 H -0.012 1.012 46 H -0.018 1.018 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 22.038 7.985 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 C -0.202 4.202 4 C -0.027 4.027 5 N -0.245 5.245 6 C -0.105 4.105 7 C 0.012 3.988 8 H 0.096 0.904 9 C 0.009 3.991 10 O -0.311 6.311 11 C -0.011 4.011 12 C -0.129 4.129 13 N -0.215 5.215 14 C -0.087 4.087 15 C 0.251 3.749 16 O -0.465 6.465 17 N -0.353 5.353 18 C 0.148 3.852 19 C -0.597 4.597 20 H 0.101 0.899 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.179 1.179 27 N -0.072 5.072 28 O 0.026 5.974 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.159 0.841 44 H 0.242 0.758 45 H 0.006 0.994 46 H 0.000 1.000 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.183 21.655 8.637 23.344 hybrid contribution -0.941 -1.410 -1.232 2.096 sum 0.242 20.245 7.405 21.558 Atomic orbital electron populations 1.21937 0.90782 1.02697 1.05224 1.20195 0.98046 0.96798 0.87207 1.21915 1.01458 0.91668 1.05119 1.29671 0.92407 0.91084 0.89501 1.71993 1.18475 1.14729 1.19315 1.25332 1.00534 0.98784 0.85804 1.20736 0.92756 0.90851 0.94469 0.90372 1.22534 0.89190 0.89243 0.98152 1.88001 1.42827 1.48951 1.51280 1.22892 0.91361 0.98132 0.88732 1.23191 0.96321 0.93039 1.00394 1.62765 1.02693 1.28488 1.27507 1.22335 0.93762 0.94980 0.97590 1.22491 0.84755 0.84012 0.83597 1.90579 1.25184 1.68651 1.62090 1.46339 1.09661 1.36927 1.42392 1.18500 0.96706 0.84527 0.85486 1.21592 0.92758 1.20204 1.25107 0.89936 1.26070 1.01567 0.96541 0.95238 1.70138 1.30283 1.28218 1.28186 0.85157 0.77778 0.77219 0.79083 1.19506 1.20798 1.17860 1.74668 1.11852 1.03537 1.17113 1.85262 1.54143 1.42301 1.15725 0.90680 0.87792 0.93577 0.86728 0.90863 0.92524 0.87906 0.87917 0.90898 0.86101 0.90329 0.87008 0.93378 0.88870 0.84107 0.75797 0.99381 1.00008 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.18 71.98 0.66 -1.17 16 2 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 3 C -0.14 -1.38 9.18 71.98 0.66 -0.72 16 4 C 0.19 4.68 7.02 88.38 0.62 5.30 16 5 N -0.51 -16.53 11.55 -303.21 -3.50 -20.04 16 6 C 0.17 5.37 5.43 138.46 0.75 6.12 16 7 C 0.12 4.08 2.19 44.18 0.10 4.17 16 8 H 0.08 3.33 5.60 -2.39 -0.01 3.32 16 9 C 0.09 2.48 6.27 72.01 0.45 2.93 16 10 O -0.39 -11.65 10.83 -148.98 -1.61 -13.27 16 11 C 0.07 1.55 7.01 72.01 0.50 2.06 16 12 C 0.00 -0.06 5.25 86.31 0.45 0.39 16 13 N -0.49 -14.77 4.73 -878.94 -4.16 -18.93 16 14 C 0.05 1.38 5.63 85.56 0.48 1.86 16 15 C 0.47 19.18 7.20 87.66 0.63 19.81 16 16 O -0.58 -28.75 11.59 -3.02 -0.04 -28.78 16 17 N -0.70 -30.61 5.55 -466.80 -2.59 -33.20 16 18 C 0.27 15.15 5.43 85.63 0.46 15.61 16 19 C -0.56 -30.75 9.28 25.60 0.24 -30.52 16 20 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 21 C 0.01 0.32 5.46 84.65 0.46 0.78 16 22 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 23 Si 0.98 42.37 29.54 68.60 2.03 44.40 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 27 N -0.37 -10.57 11.96 -60.33 -0.72 -11.29 16 28 O 0.09 2.17 11.31 74.90 0.85 3.01 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.05 1.79 5.55 -2.39 -0.01 1.78 16 42 H 0.09 2.87 6.71 -2.39 -0.02 2.85 16 43 H 0.14 3.35 8.14 -2.38 -0.02 3.33 16 44 H 0.41 14.78 8.32 -92.71 -0.77 14.01 16 45 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 47 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.53 383.79 -2.80 -80.34 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.22 Total: 27.46 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 6.44 Total: 26.57 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -10.69 Total: -139.73 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.80 Total: -39.04 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -77.53 -2.80 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779630508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.808 kcal (2) G-P(sol) polarization free energy of solvation -77.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds