Wall clock time and date at job start Tue Mar 31 2020 21:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47582 * 2 1 4 4 C 1.52999 * 109.46881 * 239.99962 * 2 1 3 5 5 O 1.45203 * 109.47259 * 120.00308 * 2 1 3 6 6 C 1.34638 * 116.99966 * 59.99607 * 5 2 1 7 7 O 1.21513 * 119.99889 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99687 * 179.97438 * 6 5 2 9 9 C 1.47422 * 125.65315 * 0.04281 * 8 6 5 10 10 C 1.55122 * 104.94731 * 203.96723 * 9 8 6 11 11 H 1.09000 * 111.16225 * 205.13010 * 10 9 8 12 12 C 1.47195 * 110.93726 * 81.21392 * 10 9 8 13 13 N 6.42830 * 129.96630 * 146.80617 * 2 1 3 14 14 C 1.55154 * 101.48286 * 323.22244 * 10 9 8 15 15 H 1.09006 * 110.72125 * 276.82764 * 14 10 9 16 16 N 1.46496 * 110.72125 * 153.73665 * 14 10 9 17 17 C 1.34777 * 120.00258 * 157.44219 * 16 14 10 18 18 O 1.21579 * 119.99978 * 359.97438 * 17 16 14 19 19 N 1.34784 * 119.99908 * 179.97438 * 17 16 14 20 20 C 1.46494 * 119.99635 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.47011 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99997 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99976 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99824 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47195 * 89.99983 * 25 23 21 27 27 H 1.48499 * 109.47159 * 209.99893 * 25 23 21 28 28 H 1.48507 * 109.47229 * 330.00160 * 25 23 21 29 29 C 1.47024 * 125.64759 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.46736 * 299.99721 * 1 2 3 31 31 H 1.09000 * 109.47237 * 59.99248 * 1 2 3 32 32 H 1.09000 * 109.47576 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47258 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46542 * 300.00613 * 3 2 1 35 35 H 1.08997 * 109.46876 * 59.99951 * 3 2 1 36 36 H 1.08996 * 109.47407 * 300.00323 * 4 2 1 37 37 H 1.09003 * 109.47199 * 60.00043 * 4 2 1 38 38 H 1.09005 * 109.47519 * 179.97438 * 4 2 1 39 39 H 1.09005 * 110.36931 * 322.93374 * 9 8 6 40 40 H 1.09006 * 110.36967 * 85.13866 * 9 8 6 41 41 H 0.96999 * 119.99694 * 337.43609 * 16 14 10 42 42 H 0.96995 * 120.00015 * 359.72369 * 19 17 16 43 43 H 1.09005 * 109.47306 * 299.99972 * 20 19 17 44 44 H 1.09002 * 109.47518 * 60.00210 * 20 19 17 45 45 H 0.96998 * 119.99718 * 180.02562 * 24 23 21 46 46 H 1.08995 * 109.88272 * 59.55692 * 29 8 6 47 47 H 1.09006 * 110.00864 * 298.46526 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0680 -2.6658 2.4165 9 6 2.9175 -2.1403 3.5008 10 6 3.5992 -3.3904 4.1165 11 1 3.8850 -3.2123 5.1531 12 6 4.7621 -3.8040 3.3144 13 7 5.6591 -4.1229 2.6973 14 6 2.4598 -4.4396 4.0261 15 1 1.7784 -4.3427 4.8714 16 7 3.0085 -5.7962 3.9581 17 6 2.2511 -6.8487 4.3254 18 8 1.1125 -6.6723 4.7136 19 7 2.7558 -8.0969 4.2623 20 6 1.9327 -9.2408 4.6621 21 6 2.7260 -10.5118 4.4991 22 1 3.7415 -10.4714 4.1338 23 6 2.1552 -11.7262 4.8164 24 7 0.9183 -11.7753 5.2607 25 14 3.1382 -13.3016 4.6137 26 1 3.8669 -13.5959 5.8737 27 1 2.2167 -14.4233 4.3013 28 1 4.1126 -13.1379 3.5050 29 6 1.7493 -4.0714 2.7065 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6765 -1.7489 -1.2493 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7209 -1.2496 39 1 3.6665 -1.4578 3.0991 40 1 2.3076 -1.6348 4.2496 41 1 3.9169 -5.9369 3.6486 42 1 3.6628 -8.2380 3.9487 43 1 1.6369 -9.1288 5.7053 44 1 1.0424 -9.2849 4.0348 45 1 0.5170 -12.6296 5.4843 46 1 2.1125 -4.7079 1.8997 47 1 0.6720 -4.1941 2.8190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:43 Heat of formation + Delta-G solvation = -74.096632 kcal Electronic energy + Delta-G solvation = -29439.460344 eV Core-core repulsion = 25237.056150 eV Total energy + Delta-G solvation = -4202.404195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20877 -40.10261 -38.68927 -37.14923 -36.18764 -34.66153 -34.20639 -33.83376 -32.35805 -31.29493 -29.02248 -27.73852 -27.66984 -26.97854 -24.96955 -23.28323 -22.45635 -21.41415 -20.39877 -19.72175 -18.56024 -18.28536 -18.08569 -16.81491 -16.65757 -16.13686 -15.68611 -15.57100 -15.19270 -14.82534 -14.65959 -14.47031 -14.31478 -14.17556 -13.83922 -13.60308 -13.31114 -13.26285 -13.08430 -12.86522 -12.78322 -12.46337 -12.23984 -12.20529 -12.19463 -12.05031 -11.99015 -11.75087 -11.68293 -11.56187 -11.49219 -10.96995 -10.89729 -10.65306 -10.32361 -10.28304 -9.58501 -9.39297 -9.15490 -9.03647 -8.74102 -7.86758 -6.16879 -4.23470 1.70925 2.26720 2.41099 2.60036 3.03622 3.24538 3.31132 3.33854 3.42607 3.52901 3.69809 3.95582 4.18673 4.31577 4.39145 4.43383 4.47343 4.57919 4.89034 4.91585 5.02409 5.05884 5.13737 5.19345 5.19739 5.21771 5.23259 5.36702 5.44625 5.54944 5.62739 5.65712 5.70505 5.79515 6.00106 6.04258 6.17748 6.52589 6.93843 7.11210 7.17789 7.41537 7.48727 7.53199 7.80679 7.98968 8.07186 8.70039 8.83831 9.20372 9.43792 10.93214 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002147 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.553471 B =13040.749931 C =13456.744064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.362 6.362 6 C 0.670 3.330 7 O -0.558 6.558 8 N -0.605 5.605 9 C 0.118 3.882 10 C -0.021 4.021 11 H 0.150 0.850 12 C 0.207 3.793 13 N -0.411 5.411 14 C 0.174 3.826 15 H 0.132 0.868 16 N -0.751 5.751 17 C 0.696 3.304 18 O -0.593 6.593 19 N -0.725 5.725 20 C 0.267 3.733 21 C -0.543 4.543 22 H 0.062 0.938 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.904 3.096 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.273 1.273 29 C 0.108 3.892 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.392 0.608 42 H 0.387 0.613 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.266 0.734 46 H 0.078 0.922 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 28.305 -5.574 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.277 6.277 6 C 0.425 3.575 7 O -0.446 6.446 8 N -0.347 5.347 9 C -0.006 4.006 10 C -0.044 4.044 11 H 0.167 0.833 12 C -0.111 4.111 13 N -0.086 5.086 14 C 0.064 3.936 15 H 0.150 0.850 16 N -0.409 5.409 17 C 0.395 3.605 18 O -0.471 6.471 19 N -0.377 5.377 20 C 0.146 3.854 21 C -0.582 4.582 22 H 0.080 0.920 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.731 3.269 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.198 1.198 29 C -0.015 4.015 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.227 0.773 42 H 0.219 0.781 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.041 27.703 -6.457 28.732 hybrid contribution 1.010 -0.934 -0.250 1.398 sum 5.051 26.770 -6.707 28.055 Atomic orbital electron populations 1.22520 0.93822 1.05229 1.02524 1.22094 0.94495 0.91446 0.82015 1.21854 1.02212 0.92446 1.03166 1.22527 1.01545 1.03615 0.96496 1.86283 1.71566 1.23328 1.46525 1.17399 0.78778 0.80443 0.80888 1.90944 1.40931 1.70406 1.42361 1.46997 1.53495 1.12787 1.21452 1.22358 0.93990 0.94161 0.90109 1.20459 0.87922 0.96592 0.99399 0.83279 1.28487 0.94149 0.94327 0.94132 1.81239 1.11129 1.07364 1.08887 1.21691 0.93015 0.80472 0.98387 0.85031 1.45200 1.17280 1.04726 1.73674 1.16102 0.84562 0.80857 0.78945 1.90896 1.17392 1.84669 1.54144 1.45770 1.18056 1.05113 1.68716 1.19031 0.90323 0.80119 0.95943 1.21218 0.99895 0.90954 1.46107 0.91958 1.24935 0.95029 0.99278 0.94741 1.69972 1.12833 1.26274 1.43102 0.86412 0.79651 0.82313 0.78502 1.20472 1.20992 1.19797 1.22600 1.02265 0.78900 0.97729 0.92068 0.91116 0.89287 0.91514 0.90115 0.91392 0.89334 0.91075 0.92223 0.88906 0.88184 0.77288 0.78052 0.95498 0.95540 0.92431 0.90335 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.37 37.15 0.31 -1.25 16 2 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 3 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 4 C -0.18 -1.67 8.37 37.16 0.31 -1.35 16 5 O -0.36 -3.69 9.42 -40.32 -0.38 -4.07 16 6 C 0.67 8.07 7.93 54.05 0.43 8.50 16 7 O -0.56 -8.27 12.21 -19.28 -0.24 -8.51 16 8 N -0.61 -6.05 3.30 -176.16 -0.58 -6.63 16 9 C 0.12 0.69 6.36 -2.41 -0.02 0.68 16 10 C -0.02 -0.13 3.52 -91.15 -0.32 -0.45 16 11 H 0.15 0.39 8.14 -51.93 -0.42 -0.04 16 12 C 0.21 1.97 12.77 -20.81 -0.27 1.71 16 13 N -0.41 -5.11 18.53 42.10 0.78 -4.33 16 14 C 0.17 1.71 3.05 -66.10 -0.20 1.50 16 15 H 0.13 1.26 7.62 -51.93 -0.40 0.86 16 16 N -0.75 -9.88 5.02 -56.89 -0.29 -10.17 16 17 C 0.70 13.10 8.57 -86.91 -0.74 12.36 16 18 O -0.59 -13.30 16.03 5.30 0.08 -13.22 16 19 N -0.73 -14.94 5.55 -66.41 -0.37 -15.31 16 20 C 0.27 6.95 5.43 -5.19 -0.03 6.92 16 21 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 22 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.88 -25.84 13.29 55.43 0.74 -25.11 16 25 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.11 1.23 6.46 -3.06 -0.02 1.21 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.39 4.75 7.01 -40.82 -0.29 4.47 16 42 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 47 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.47 394.04 -7.14 -42.60 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.07 Total: 5.82 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -0.74 Total: 17.13 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.28 Total: -61.54 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.53 Total: -25.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.47 -7.14 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.494 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds