Wall clock time and date at job start Tue Mar 31 2020 21:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47582 * 2 1 4 4 C 1.52999 * 109.46881 * 239.99962 * 2 1 3 5 5 O 1.45203 * 109.47259 * 120.00308 * 2 1 3 6 6 C 1.34638 * 116.99966 * 59.99607 * 5 2 1 7 7 O 1.21513 * 119.99889 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99687 * 179.97438 * 6 5 2 9 9 C 1.47422 * 125.65315 * 0.04281 * 8 6 5 10 10 C 1.55122 * 104.94731 * 203.96723 * 9 8 6 11 11 H 1.09000 * 111.16225 * 205.13010 * 10 9 8 12 12 C 1.47195 * 110.93726 * 81.21392 * 10 9 8 13 13 N 6.42830 * 129.96630 * 146.80617 * 2 1 3 14 14 C 1.55154 * 101.48286 * 323.22244 * 10 9 8 15 15 H 1.09006 * 110.72125 * 276.82764 * 14 10 9 16 16 N 1.46496 * 110.72125 * 153.73665 * 14 10 9 17 17 C 1.34777 * 120.00258 * 157.44219 * 16 14 10 18 18 O 1.21579 * 119.99978 * 359.97438 * 17 16 14 19 19 N 1.34784 * 119.99908 * 179.97438 * 17 16 14 20 20 C 1.46494 * 119.99635 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.47011 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.37876 * 119.99997 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99976 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99824 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47195 * 89.99983 * 25 23 21 27 27 H 1.48499 * 109.47159 * 209.99893 * 25 23 21 28 28 H 1.48507 * 109.47229 * 330.00160 * 25 23 21 29 29 C 1.47024 * 125.64759 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.46736 * 299.99721 * 1 2 3 31 31 H 1.09000 * 109.47237 * 59.99248 * 1 2 3 32 32 H 1.09000 * 109.47576 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47258 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46542 * 300.00613 * 3 2 1 35 35 H 1.08997 * 109.46876 * 59.99951 * 3 2 1 36 36 H 1.08996 * 109.47407 * 300.00323 * 4 2 1 37 37 H 1.09003 * 109.47199 * 60.00043 * 4 2 1 38 38 H 1.09005 * 109.47519 * 179.97438 * 4 2 1 39 39 H 1.09005 * 110.36931 * 322.93374 * 9 8 6 40 40 H 1.09006 * 110.36967 * 85.13866 * 9 8 6 41 41 H 0.96999 * 119.99694 * 337.43609 * 16 14 10 42 42 H 0.96995 * 120.00015 * 359.72369 * 19 17 16 43 43 H 1.09005 * 109.47306 * 299.99972 * 20 19 17 44 44 H 1.09002 * 109.47518 * 60.00210 * 20 19 17 45 45 H 0.96998 * 119.99718 * 180.02562 * 24 23 21 46 46 H 1.08995 * 109.88272 * 59.55692 * 29 8 6 47 47 H 1.09006 * 110.00864 * 298.46526 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0680 -2.6658 2.4165 9 6 2.9175 -2.1403 3.5008 10 6 3.5992 -3.3904 4.1165 11 1 3.8850 -3.2123 5.1531 12 6 4.7621 -3.8040 3.3144 13 7 5.6591 -4.1229 2.6973 14 6 2.4598 -4.4396 4.0261 15 1 1.7784 -4.3427 4.8714 16 7 3.0085 -5.7962 3.9581 17 6 2.2511 -6.8487 4.3254 18 8 1.1125 -6.6723 4.7136 19 7 2.7558 -8.0969 4.2623 20 6 1.9327 -9.2408 4.6621 21 6 2.7260 -10.5118 4.4991 22 1 3.7415 -10.4714 4.1338 23 6 2.1552 -11.7262 4.8164 24 7 0.9183 -11.7753 5.2607 25 14 3.1382 -13.3016 4.6137 26 1 3.8669 -13.5959 5.8737 27 1 2.2167 -14.4233 4.3013 28 1 4.1126 -13.1379 3.5050 29 6 1.7493 -4.0714 2.7065 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6765 -1.7489 -1.2493 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7209 -1.2496 39 1 3.6665 -1.4578 3.0991 40 1 2.3076 -1.6348 4.2496 41 1 3.9169 -5.9369 3.6486 42 1 3.6628 -8.2380 3.9487 43 1 1.6369 -9.1288 5.7053 44 1 1.0424 -9.2849 4.0348 45 1 0.5170 -12.6296 5.4843 46 1 2.1125 -4.7079 1.8997 47 1 0.6720 -4.1941 2.8190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:42 Heat of formation + Delta-G solvation = -100.900381 kcal Electronic energy + Delta-G solvation = -29440.622642 eV Core-core repulsion = 25237.056150 eV Total energy + Delta-G solvation = -4203.566492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07038 -41.21888 -39.89742 -38.00806 -37.08139 -36.19228 -35.51513 -34.84831 -34.27584 -32.17857 -30.11644 -28.79968 -28.37144 -28.26830 -25.81113 -24.78259 -23.65651 -22.43208 -21.78149 -20.56818 -19.94183 -19.15513 -19.08520 -18.04434 -17.64167 -17.46328 -17.08540 -16.51349 -16.41891 -16.25644 -15.85860 -15.52204 -15.24108 -15.11731 -14.92562 -14.62896 -14.40222 -14.24093 -14.16890 -14.01188 -13.80314 -13.60174 -13.32634 -13.09224 -13.01088 -12.89652 -12.87753 -12.84935 -12.73161 -12.61280 -12.48536 -12.27878 -12.25691 -12.22177 -11.46856 -11.40102 -11.28670 -11.15573 -10.79695 -10.42680 -9.91494 -9.68695 -8.28022 -6.43523 0.88176 1.42976 1.45230 1.47986 1.55981 1.65405 1.69804 1.80419 2.18790 2.38701 2.74059 2.83564 3.06971 3.24881 3.38227 3.43303 3.75231 3.78057 3.80203 3.95368 4.07434 4.43320 4.48909 4.54099 4.61461 4.66593 4.68213 4.74047 4.77099 4.83682 4.85929 4.90108 5.00492 5.09379 5.16945 5.28056 5.30651 5.34583 5.37611 5.43377 5.48463 5.62711 5.85825 6.09311 6.28254 6.43373 6.67557 7.17703 7.19373 7.26294 7.65881 8.83857 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002147 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.553471 B =13040.749931 C =13456.744064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.356 6.356 6 C 0.663 3.337 7 O -0.596 6.596 8 N -0.604 5.604 9 C 0.116 3.884 10 C -0.002 4.002 11 H 0.204 0.796 12 C 0.226 3.774 13 N -0.463 5.463 14 C 0.172 3.828 15 H 0.145 0.855 16 N -0.730 5.730 17 C 0.699 3.301 18 O -0.630 6.630 19 N -0.725 5.725 20 C 0.286 3.714 21 C -0.556 4.556 22 H 0.079 0.921 23 C 0.006 3.994 24 N -0.927 5.927 25 Si 0.982 3.018 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.261 1.261 29 C 0.112 3.888 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.401 0.599 42 H 0.401 0.599 43 H -0.006 1.006 44 H -0.013 1.013 45 H 0.269 0.731 46 H 0.051 0.949 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 30.398 -4.938 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.271 6.271 6 C 0.418 3.582 7 O -0.486 6.486 8 N -0.346 5.346 9 C -0.006 4.006 10 C -0.024 4.024 11 H 0.221 0.779 12 C -0.091 4.091 13 N -0.139 5.139 14 C 0.064 3.936 15 H 0.162 0.838 16 N -0.387 5.387 17 C 0.398 3.602 18 O -0.511 6.511 19 N -0.378 5.378 20 C 0.163 3.837 21 C -0.594 4.594 22 H 0.097 0.903 23 C -0.194 4.194 24 N -0.565 5.565 25 Si 0.805 3.195 26 H -0.194 1.194 27 H -0.209 1.209 28 H -0.185 1.185 29 C -0.012 4.012 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.237 0.763 42 H 0.236 0.764 43 H 0.012 0.988 44 H 0.005 0.995 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.146 29.880 -5.828 31.058 hybrid contribution 0.318 -1.474 -0.508 1.591 sum 6.464 28.406 -6.336 29.814 Atomic orbital electron populations 1.22469 0.93947 1.03440 1.03839 1.22435 0.94625 0.92825 0.81200 1.21867 1.02402 0.90114 1.04583 1.22488 1.01470 1.02015 0.97934 1.86294 1.71359 1.22153 1.47253 1.17646 0.78574 0.81010 0.80936 1.90934 1.42592 1.71255 1.43858 1.47030 1.53577 1.12097 1.21921 1.22776 0.94242 0.93960 0.89660 1.20760 0.85223 0.94686 1.01735 0.77943 1.29063 0.93956 0.93011 0.93113 1.81269 1.13171 1.08854 1.10639 1.21932 0.94811 0.79204 0.97691 0.83792 1.44965 1.16970 1.04762 1.71997 1.16165 0.84302 0.81234 0.78460 1.90873 1.19234 1.85271 1.55698 1.45385 1.18238 1.04829 1.69378 1.18429 0.89852 0.82258 0.93170 1.21595 1.00625 0.91297 1.45919 0.90282 1.25991 0.96040 1.03267 0.94095 1.70122 1.14838 1.27389 1.44186 0.85202 0.78049 0.77209 0.79016 1.19446 1.20930 1.18464 1.22376 1.01324 0.79795 0.97701 0.91321 0.89220 0.92540 0.91190 0.88160 0.90522 0.92659 0.89068 0.92187 0.87579 0.84208 0.76258 0.76404 0.98777 0.99468 0.92226 0.93072 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.37 71.98 0.60 -2.35 16 2 C 0.13 2.01 1.13 -10.80 -0.01 2.00 16 3 C -0.13 -1.16 8.85 71.98 0.64 -0.53 16 4 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 5 O -0.36 -6.85 9.42 -55.48 -0.52 -7.38 16 6 C 0.66 16.01 7.93 129.79 1.03 17.04 16 7 O -0.60 -18.70 12.21 19.80 0.24 -18.46 16 8 N -0.60 -11.51 3.30 -941.67 -3.11 -14.62 16 9 C 0.12 0.95 6.36 86.93 0.55 1.50 16 10 C 0.00 -0.02 3.52 -11.13 -0.04 -0.06 16 11 H 0.20 -0.19 8.14 -2.39 -0.02 -0.21 16 12 C 0.23 3.79 12.77 89.46 1.14 4.93 16 13 N -0.46 -10.97 18.53 19.99 0.37 -10.60 16 14 C 0.17 3.08 3.05 46.18 0.14 3.22 16 15 H 0.14 2.42 7.62 -2.38 -0.02 2.40 16 16 N -0.73 -18.59 5.02 -452.15 -2.27 -20.86 16 17 C 0.70 26.61 8.57 179.05 1.53 28.15 16 18 O -0.63 -29.04 16.03 -3.96 -0.06 -29.10 16 19 N -0.73 -30.41 5.55 -482.29 -2.68 -33.08 16 20 C 0.29 15.51 5.43 85.64 0.46 15.98 16 21 C -0.56 -30.28 9.28 25.60 0.24 -30.04 16 22 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 23 C 0.01 0.33 5.46 84.65 0.46 0.80 16 24 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 25 Si 0.98 42.60 29.54 68.60 2.03 44.63 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 29 C 0.11 2.58 6.46 86.73 0.56 3.14 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 36 H 0.05 1.38 5.88 -2.39 -0.01 1.37 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.11 0.71 7.94 -2.38 -0.02 0.69 16 40 H 0.14 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.40 9.21 7.01 -92.71 -0.65 8.56 16 42 H 0.40 14.39 8.34 -92.71 -0.77 13.62 16 43 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.05 1.45 8.03 -2.39 -0.02 1.43 16 47 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -83.18 394.04 1.78 -81.41 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.41 Total: 22.12 kcal Atomic # 6 Polarization: 33.23 SS G_CDS: 7.91 Total: 41.14 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -7.40 Total: -134.36 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.34 Total: -54.94 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -83.18 1.78 -81.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.495 kcal (2) G-P(sol) polarization free energy of solvation -83.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds