Wall clock time and date at job start Tue Mar 31 2020 20:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47443 * 2 1 4 4 O 1.42906 * 109.46853 * 59.63022 * 3 2 1 5 5 C 1.52996 * 109.47372 * 179.63094 * 3 2 1 6 6 C 1.53002 * 109.47206 * 305.00189 * 5 3 2 7 7 C 1.52998 * 109.46865 * 299.63661 * 3 2 1 8 8 C 1.52997 * 109.47033 * 181.70536 * 7 3 2 9 9 N 1.46500 * 109.47366 * 183.30152 * 8 7 3 10 10 C 1.34779 * 120.00069 * 179.97438 * 9 8 7 11 11 O 1.21364 * 120.00394 * 359.97438 * 10 9 8 12 12 C 1.49313 * 119.99629 * 179.97438 * 10 9 8 13 13 O 1.21400 * 119.99987 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.40288 * 119.99877 * 179.97438 * 14 12 10 16 16 C 1.40727 * 126.10142 * 359.96351 * 15 14 12 17 17 N 1.30872 * 108.37707 * 179.78677 * 16 15 14 18 18 N 1.40068 * 108.43819 * 0.38377 * 17 16 15 19 19 C 1.37287 * 126.05681 * 179.87976 * 18 17 16 20 20 H 1.08003 * 120.00191 * 179.68958 * 19 18 17 21 21 C 1.39002 * 120.00242 * 359.95803 * 19 18 17 22 22 N 1.31285 * 120.00034 * 359.72581 * 21 19 18 23 23 Si 1.86800 * 120.00361 * 179.72638 * 21 19 18 24 24 H 1.48500 * 109.46923 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47251 * 119.99843 * 23 21 19 26 26 H 1.48496 * 109.47507 * 240.00271 * 23 21 19 27 27 C 1.35791 * 126.10179 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.47036 * 305.51013 * 1 2 3 29 29 H 1.09007 * 109.46849 * 65.50157 * 1 2 3 30 30 H 1.08991 * 109.47341 * 185.50636 * 1 2 3 31 31 H 1.08996 * 109.47012 * 239.99910 * 2 1 3 32 32 H 1.08998 * 109.46859 * 119.99857 * 2 1 3 33 33 H 0.96702 * 113.99170 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46669 * 64.99807 * 5 3 2 35 35 H 1.08996 * 109.47275 * 184.99779 * 5 3 2 36 36 H 1.09001 * 109.47097 * 299.99959 * 6 5 3 37 37 H 1.09006 * 109.47239 * 59.99459 * 6 5 3 38 38 H 1.09000 * 109.47246 * 179.97438 * 6 5 3 39 39 H 1.08998 * 109.47557 * 61.69791 * 7 3 2 40 40 H 1.09002 * 109.46947 * 301.69871 * 7 3 2 41 41 H 1.08996 * 109.47566 * 63.29956 * 8 7 3 42 42 H 1.09008 * 109.46788 * 303.29809 * 8 7 3 43 43 H 0.97000 * 119.99805 * 359.97438 * 9 8 7 44 44 H 0.97000 * 120.00126 * 0.02562 * 14 12 10 45 45 H 1.08002 * 125.80713 * 359.97438 * 16 15 14 46 46 H 0.97001 * 120.00126 * 179.97438 * 22 21 19 47 47 H 1.08004 * 126.24611 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5567 2.1186 1.1625 5 6 3.5700 1.4425 0.0093 6 6 4.0728 0.6176 1.1957 7 6 1.5376 2.1611 -1.2538 8 6 2.0825 3.5905 -1.2752 9 7 1.5384 4.3033 -2.4338 10 6 1.8820 5.5872 -2.6574 11 8 2.6417 6.1531 -1.8988 12 6 1.3279 6.3134 -3.8385 13 8 0.5676 5.7474 -4.5971 14 7 1.6710 7.5975 -4.0619 15 6 1.1508 8.2796 -5.1719 16 6 0.2662 7.7509 -6.1302 17 7 0.0026 8.6850 -7.0081 18 7 0.7115 9.8397 -6.6528 19 6 0.6993 11.0351 -7.3278 20 1 1.2822 11.8676 -6.9623 21 6 -0.0675 11.1757 -8.4786 22 7 -0.7759 10.1637 -8.9231 23 14 -0.0901 12.8046 -9.3928 24 1 0.7866 13.7774 -8.6925 25 1 0.4044 12.6016 -10.7783 26 1 -1.4785 13.3296 -9.4347 27 6 1.4112 9.5679 -5.5134 28 1 -0.3633 0.5969 0.8365 29 1 -0.3633 0.4262 -0.9352 30 1 -0.3633 -1.0228 0.0986 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8420 3.0402 1.2285 34 1 3.9389 1.0061 -0.9190 35 1 3.9328 2.4664 0.0988 36 1 3.7039 1.0539 2.1240 37 1 3.7100 -0.4064 1.1062 38 1 5.1628 0.6172 1.2021 39 1 0.4480 2.1876 -1.2453 40 1 1.8811 1.6280 -2.1403 41 1 3.1700 3.5639 -1.3430 42 1 1.7879 4.1054 -0.3607 43 1 0.9309 3.8511 -3.0399 44 1 2.2782 8.0498 -3.4555 45 1 -0.1302 6.7463 -6.1380 46 1 -1.3113 10.2619 -9.7260 47 1 2.0554 10.2519 -4.9810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788340790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:39 Heat of formation + Delta-G solvation = -50.507076 kcal Electronic energy + Delta-G solvation = -28579.589171 eV Core-core repulsion = 24378.207897 eV Total energy + Delta-G solvation = -4201.381275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59318 -39.81796 -39.31896 -37.92867 -35.45579 -34.26374 -33.94757 -33.18482 -32.20131 -30.82431 -30.33653 -28.10486 -26.52112 -25.26457 -24.06096 -23.35964 -22.60746 -21.06511 -20.49902 -20.12498 -19.49276 -18.24008 -17.49763 -17.01168 -16.23468 -16.10069 -15.77000 -15.51701 -15.43111 -15.08068 -14.98427 -14.75633 -14.25897 -14.04426 -13.98524 -13.75773 -13.51499 -13.12131 -13.01252 -12.75867 -12.49578 -12.30836 -12.22619 -12.03022 -11.76420 -11.61025 -11.60445 -11.34646 -11.31991 -11.26465 -11.16472 -10.90228 -10.60562 -10.54174 -10.32477 -10.22108 -9.36762 -9.25559 -9.16937 -8.89808 -8.15100 -6.80346 -6.62403 -4.29725 1.60816 2.52762 2.90953 3.02818 3.08642 3.29512 3.68991 3.71521 3.80626 3.92986 4.19231 4.31181 4.34692 4.41568 4.57541 4.66982 4.73970 4.87729 4.96319 4.98501 5.04538 5.08312 5.11603 5.22949 5.35100 5.38206 5.56145 5.56613 5.62144 5.70179 5.79030 5.83151 5.93123 6.04714 6.10259 6.17963 6.33572 6.72648 6.87000 6.88258 7.14054 7.15622 7.28491 7.72291 7.81965 8.06427 8.16114 8.45673 8.67100 9.29217 9.57712 10.33453 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.001720 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.444159 B =16273.920832 C =16768.066718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C 0.141 3.859 4 O -0.555 6.555 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.163 4.163 8 C 0.114 3.886 9 N -0.704 5.704 10 C 0.515 3.485 11 O -0.529 6.529 12 C 0.483 3.517 13 O -0.523 6.523 14 N -0.582 5.582 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.260 5.260 18 N -0.138 5.138 19 C -0.321 4.321 20 H 0.119 0.881 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.077 4.077 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.375 0.625 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.414 0.586 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -16.385 16.315 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C 0.100 3.900 4 O -0.362 6.362 5 C -0.193 4.193 6 C -0.208 4.208 7 C -0.201 4.201 8 C -0.009 4.009 9 N -0.358 5.358 10 C 0.296 3.704 11 O -0.405 6.405 12 C 0.264 3.736 13 O -0.401 6.401 14 N -0.225 5.225 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.228 4.228 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.251 0.749 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.401 -16.727 15.182 23.226 hybrid contribution 0.838 1.101 0.262 1.408 sum 6.239 -15.626 15.444 22.839 Atomic orbital electron populations 1.21771 0.95159 1.01592 1.02507 1.21570 0.96888 0.93596 1.02751 1.21124 0.92080 0.92764 0.84066 1.86548 1.76660 1.28926 1.44034 1.22307 0.95496 1.01554 0.99965 1.21771 1.00486 1.00119 0.98418 1.22592 1.02938 0.94849 0.99762 1.21492 0.99057 0.91625 0.88733 1.45678 1.49171 1.12053 1.28899 1.20317 0.81448 0.82576 0.86009 1.90731 1.34999 1.67123 1.47607 1.19626 0.84341 0.83108 0.86560 1.90656 1.35534 1.66798 1.47074 1.42142 1.44477 1.10453 1.25430 1.17257 1.11596 0.93251 0.95521 1.24147 1.01262 1.00513 0.94277 1.78264 1.18160 0.90968 1.21728 1.44575 1.24044 1.08746 1.13136 1.19979 1.30252 0.87334 1.07817 0.86363 1.25673 0.95070 0.99453 0.96965 1.70217 1.20192 1.29551 1.19403 0.85735 0.78857 0.80108 0.79303 1.18607 1.19855 1.19850 1.21308 1.08974 0.96354 0.96207 0.91646 0.92636 0.92965 0.90777 0.90730 0.77627 0.90899 0.91160 0.92064 0.92409 0.92906 0.89608 0.89933 0.90751 0.91216 0.74924 0.75586 0.80563 0.91387 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.33 37.16 0.35 -0.67 16 2 C -0.11 -0.68 4.72 -26.73 -0.13 -0.80 16 3 C 0.14 0.88 0.52 -90.62 -0.05 0.83 16 4 O -0.55 -4.07 11.70 -35.23 -0.41 -4.48 16 5 C -0.16 -0.91 4.65 -26.73 -0.12 -1.03 16 6 C -0.15 -0.88 9.32 37.16 0.35 -0.53 16 7 C -0.16 -1.06 4.21 -26.73 -0.11 -1.17 16 8 C 0.11 0.95 4.98 -4.04 -0.02 0.93 16 9 N -0.70 -7.82 5.55 -60.77 -0.34 -8.16 16 10 C 0.52 7.55 7.88 -11.65 -0.09 7.46 16 11 O -0.53 -8.44 16.48 5.48 0.09 -8.35 16 12 C 0.48 8.60 7.85 -11.65 -0.09 8.50 16 13 O -0.52 -10.41 13.62 5.45 0.07 -10.34 16 14 N -0.58 -10.88 5.45 -10.45 -0.06 -10.94 16 15 C -0.07 -1.62 6.90 -83.92 -0.58 -2.19 16 16 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 17 N -0.26 -7.44 10.39 30.81 0.32 -7.12 16 18 N -0.14 -3.74 3.73 -11.40 -0.04 -3.79 16 19 C -0.32 -8.37 10.25 -14.83 -0.15 -8.53 16 20 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 22 N -0.77 -21.08 11.81 55.50 0.66 -20.42 16 23 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 29 H 0.05 0.36 6.78 -51.93 -0.35 0.01 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 33 H 0.38 2.00 7.32 45.56 0.33 2.33 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 6.76 -51.93 -0.35 0.07 16 36 H 0.06 0.39 7.82 -51.93 -0.41 -0.01 16 37 H 0.06 0.32 6.34 -51.93 -0.33 -0.01 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.59 6.66 -51.93 -0.35 0.25 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 42 H 0.07 0.57 6.66 -51.92 -0.35 0.22 16 43 H 0.41 4.28 7.94 -40.82 -0.32 3.96 16 44 H 0.41 6.57 8.29 -40.82 -0.34 6.24 16 45 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 46 H 0.28 6.88 8.31 -40.82 -0.34 6.55 16 47 H 0.15 2.91 8.06 -52.48 -0.42 2.48 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -32.93 384.00 -5.98 -38.92 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -5.92 Total: 14.26 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.12 Total: 1.03 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.54 Total: -50.42 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.25 Total: -23.16 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.93 -5.98 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.589 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds