Wall clock time and date at job start Tue Mar 31 2020 20:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47443 * 2 1 4 4 O 1.42906 * 109.46853 * 59.63022 * 3 2 1 5 5 C 1.52996 * 109.47372 * 179.63094 * 3 2 1 6 6 C 1.53002 * 109.47206 * 305.00189 * 5 3 2 7 7 C 1.52998 * 109.46865 * 299.63661 * 3 2 1 8 8 C 1.52997 * 109.47033 * 181.70536 * 7 3 2 9 9 N 1.46500 * 109.47366 * 183.30152 * 8 7 3 10 10 C 1.34779 * 120.00069 * 179.97438 * 9 8 7 11 11 O 1.21364 * 120.00394 * 359.97438 * 10 9 8 12 12 C 1.49313 * 119.99629 * 179.97438 * 10 9 8 13 13 O 1.21400 * 119.99987 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.40288 * 119.99877 * 179.97438 * 14 12 10 16 16 C 1.40727 * 126.10142 * 359.96351 * 15 14 12 17 17 N 1.30872 * 108.37707 * 179.78677 * 16 15 14 18 18 N 1.40068 * 108.43819 * 0.38377 * 17 16 15 19 19 C 1.37287 * 126.05681 * 179.87976 * 18 17 16 20 20 H 1.08003 * 120.00191 * 179.68958 * 19 18 17 21 21 C 1.39002 * 120.00242 * 359.95803 * 19 18 17 22 22 N 1.31285 * 120.00034 * 359.72581 * 21 19 18 23 23 Si 1.86800 * 120.00361 * 179.72638 * 21 19 18 24 24 H 1.48500 * 109.46923 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47251 * 119.99843 * 23 21 19 26 26 H 1.48496 * 109.47507 * 240.00271 * 23 21 19 27 27 C 1.35791 * 126.10179 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.47036 * 305.51013 * 1 2 3 29 29 H 1.09007 * 109.46849 * 65.50157 * 1 2 3 30 30 H 1.08991 * 109.47341 * 185.50636 * 1 2 3 31 31 H 1.08996 * 109.47012 * 239.99910 * 2 1 3 32 32 H 1.08998 * 109.46859 * 119.99857 * 2 1 3 33 33 H 0.96702 * 113.99170 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46669 * 64.99807 * 5 3 2 35 35 H 1.08996 * 109.47275 * 184.99779 * 5 3 2 36 36 H 1.09001 * 109.47097 * 299.99959 * 6 5 3 37 37 H 1.09006 * 109.47239 * 59.99459 * 6 5 3 38 38 H 1.09000 * 109.47246 * 179.97438 * 6 5 3 39 39 H 1.08998 * 109.47557 * 61.69791 * 7 3 2 40 40 H 1.09002 * 109.46947 * 301.69871 * 7 3 2 41 41 H 1.08996 * 109.47566 * 63.29956 * 8 7 3 42 42 H 1.09008 * 109.46788 * 303.29809 * 8 7 3 43 43 H 0.97000 * 119.99805 * 359.97438 * 9 8 7 44 44 H 0.97000 * 120.00126 * 0.02562 * 14 12 10 45 45 H 1.08002 * 125.80713 * 359.97438 * 16 15 14 46 46 H 0.97001 * 120.00126 * 179.97438 * 22 21 19 47 47 H 1.08004 * 126.24611 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5567 2.1186 1.1625 5 6 3.5700 1.4425 0.0093 6 6 4.0728 0.6176 1.1957 7 6 1.5376 2.1611 -1.2538 8 6 2.0825 3.5905 -1.2752 9 7 1.5384 4.3033 -2.4338 10 6 1.8820 5.5872 -2.6574 11 8 2.6417 6.1531 -1.8988 12 6 1.3279 6.3134 -3.8385 13 8 0.5676 5.7474 -4.5971 14 7 1.6710 7.5975 -4.0619 15 6 1.1508 8.2796 -5.1719 16 6 0.2662 7.7509 -6.1302 17 7 0.0026 8.6850 -7.0081 18 7 0.7115 9.8397 -6.6528 19 6 0.6993 11.0351 -7.3278 20 1 1.2822 11.8676 -6.9623 21 6 -0.0675 11.1757 -8.4786 22 7 -0.7759 10.1637 -8.9231 23 14 -0.0901 12.8046 -9.3928 24 1 0.7866 13.7774 -8.6925 25 1 0.4044 12.6016 -10.7783 26 1 -1.4785 13.3296 -9.4347 27 6 1.4112 9.5679 -5.5134 28 1 -0.3633 0.5969 0.8365 29 1 -0.3633 0.4262 -0.9352 30 1 -0.3633 -1.0228 0.0986 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8420 3.0402 1.2285 34 1 3.9389 1.0061 -0.9190 35 1 3.9328 2.4664 0.0988 36 1 3.7039 1.0539 2.1240 37 1 3.7100 -0.4064 1.1062 38 1 5.1628 0.6172 1.2021 39 1 0.4480 2.1876 -1.2453 40 1 1.8811 1.6280 -2.1403 41 1 3.1700 3.5639 -1.3430 42 1 1.7879 4.1054 -0.3607 43 1 0.9309 3.8511 -3.0399 44 1 2.2782 8.0498 -3.4555 45 1 -0.1302 6.7463 -6.1380 46 1 -1.3113 10.2619 -9.7260 47 1 2.0554 10.2519 -4.9810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788340790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:38 Heat of formation + Delta-G solvation = -75.929422 kcal Electronic energy + Delta-G solvation = -28580.691567 eV Core-core repulsion = 24378.207897 eV Total energy + Delta-G solvation = -4202.483670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03588 -41.21839 -40.22056 -39.32172 -36.58719 -35.77805 -34.95128 -34.49020 -32.67397 -32.30419 -31.56701 -29.88819 -27.55448 -26.74869 -25.24961 -23.84570 -23.47628 -22.86996 -21.77472 -21.25504 -20.74875 -19.66321 -19.15186 -17.91226 -17.45968 -17.21486 -17.09422 -16.78888 -16.51251 -16.15972 -15.96115 -15.68146 -15.51786 -15.25201 -15.03624 -14.86848 -14.62082 -14.57542 -14.44810 -13.52319 -13.41648 -13.38482 -13.00442 -12.95024 -12.94360 -12.82015 -12.77623 -12.56590 -12.52109 -12.16722 -12.02761 -11.99201 -11.79626 -11.67849 -11.13177 -11.08681 -10.87789 -10.77591 -10.53737 -10.30900 -10.14638 -8.62657 -8.49375 -6.27021 0.27765 1.28319 1.29444 1.42292 1.60085 1.71866 2.03736 2.11410 2.53130 2.57373 2.92664 3.07338 3.34974 3.52338 3.63161 3.82002 3.88833 4.10367 4.18509 4.38942 4.39495 4.48263 4.52203 4.57280 4.61390 4.70011 4.82906 4.89471 4.95469 4.98048 5.00761 5.09314 5.12426 5.14184 5.21321 5.23854 5.30246 5.30463 5.34942 5.47641 5.53406 5.89805 5.99088 6.24359 6.47597 6.66963 6.78646 6.85018 7.06794 7.41010 7.62526 8.50072 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.001720 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.444159 B =16273.920832 C =16768.066718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.144 3.856 4 O -0.569 6.569 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.155 4.155 8 C 0.113 3.887 9 N -0.687 5.687 10 C 0.524 3.476 11 O -0.540 6.540 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.057 4.057 16 C -0.048 4.048 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.241 1.241 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.074 4.074 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.383 0.617 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.419 0.581 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -16.230 17.449 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.103 3.897 4 O -0.377 6.377 5 C -0.192 4.192 6 C -0.207 4.207 7 C -0.193 4.193 8 C -0.010 4.010 9 N -0.340 5.340 10 C 0.304 3.696 11 O -0.417 6.417 12 C 0.266 3.734 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.164 4.164 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.068 4.932 19 C -0.484 4.484 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.449 5.449 23 Si 0.838 3.162 24 H -0.164 1.164 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.225 4.225 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.257 0.743 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.779 -16.609 16.369 24.285 hybrid contribution 0.447 0.861 0.074 0.974 sum 7.227 -15.747 16.443 23.887 Atomic orbital electron populations 1.21754 0.95657 1.01653 1.01881 1.21610 0.96423 0.93601 1.03312 1.21133 0.92379 0.92699 0.83531 1.86541 1.76956 1.29643 1.44532 1.22303 0.95020 1.01617 1.00262 1.21757 1.00695 1.00240 0.98017 1.22543 1.02689 0.93675 1.00415 1.21714 0.99361 0.92314 0.87580 1.45712 1.48160 1.10741 1.29370 1.19627 0.81631 0.83465 0.84838 1.90739 1.35744 1.67619 1.47634 1.20319 0.83293 0.82725 0.87018 1.90648 1.36240 1.67237 1.48073 1.42086 1.45021 1.10891 1.24707 1.17299 1.10096 0.93199 0.95767 1.24256 1.02515 1.00364 0.95215 1.78158 1.19975 0.92299 1.23529 1.44848 1.25024 1.08791 1.14505 1.20698 1.31247 0.87820 1.08621 0.84062 1.26883 0.93936 1.03433 0.97487 1.70381 1.21757 1.32426 1.20334 0.84526 0.79029 0.75091 0.77514 1.16399 1.19719 1.19743 1.22011 1.08225 0.97087 0.95188 0.93163 0.92501 0.92430 0.89491 0.90912 0.76791 0.90193 0.91177 0.92938 0.92092 0.92571 0.89884 0.88866 0.90179 0.90639 0.74339 0.73889 0.80720 0.91241 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.33 71.98 0.67 -1.16 16 2 C -0.11 -1.17 4.72 30.60 0.14 -1.03 16 3 C 0.14 1.53 0.52 -10.79 -0.01 1.52 16 4 O -0.57 -7.53 11.70 -148.98 -1.74 -9.28 16 5 C -0.15 -1.48 4.65 30.59 0.14 -1.34 16 6 C -0.15 -1.51 9.32 71.98 0.67 -0.84 16 7 C -0.16 -1.67 4.21 30.59 0.13 -1.54 16 8 C 0.11 1.61 4.98 86.38 0.43 2.04 16 9 N -0.69 -13.85 5.55 -464.55 -2.58 -16.43 16 10 C 0.52 14.42 7.88 87.23 0.69 15.11 16 11 O -0.54 -16.07 16.48 -3.29 -0.05 -16.13 16 12 C 0.48 16.76 7.85 87.23 0.69 17.45 16 13 O -0.54 -21.50 13.62 -3.40 -0.05 -21.55 16 14 N -0.58 -21.09 5.45 -305.32 -1.66 -22.75 16 15 C -0.06 -2.62 6.90 37.83 0.26 -2.35 16 16 C -0.05 -2.54 10.85 85.44 0.93 -1.61 16 17 N -0.31 -18.18 10.39 -56.43 -0.59 -18.77 16 18 N -0.16 -8.96 3.73 -189.98 -0.71 -9.67 16 19 C -0.35 -18.41 10.25 84.02 0.86 -17.55 16 20 H 0.14 6.40 7.83 -2.91 -0.02 6.37 16 21 C -0.01 -0.27 5.50 84.96 0.47 0.19 16 22 N -0.82 -46.58 11.81 21.66 0.26 -46.32 16 23 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 24 H -0.24 -8.06 7.11 99.48 0.71 -7.35 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 27 C -0.07 -3.42 11.50 83.41 0.96 -2.46 16 28 H 0.05 0.76 7.51 -2.39 -0.02 0.74 16 29 H 0.06 0.65 6.78 -2.38 -0.02 0.64 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.80 6.32 -2.39 -0.02 0.79 16 33 H 0.38 3.51 7.32 -74.06 -0.54 2.96 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.68 6.76 -2.39 -0.02 0.66 16 36 H 0.05 0.62 7.82 -2.39 -0.02 0.60 16 37 H 0.06 0.57 6.34 -2.38 -0.02 0.55 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.98 6.66 -2.39 -0.02 0.97 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.13 6.70 -2.39 -0.02 1.12 16 42 H 0.08 1.05 6.66 -2.38 -0.02 1.04 16 43 H 0.42 7.88 7.94 -92.71 -0.74 7.14 16 44 H 0.42 12.82 8.29 -92.71 -0.77 12.05 16 45 H 0.18 9.05 5.92 -2.91 -0.02 9.03 16 46 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 Total: -1.00 -72.89 384.00 0.93 -71.96 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -1.00 Total: 42.52 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 7.03 Total: 6.43 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -5.28 Total: -113.95 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.84 Total: -46.95 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -72.89 0.93 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.967 kcal (2) G-P(sol) polarization free energy of solvation -72.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds