Wall clock time and date at job start Tue Mar 31 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 119.99951 * 2 1 4 4 C 1.53004 * 109.47198 * 90.00069 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21303 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 C 1.34775 * 120.00056 * 180.02562 * 2 1 3 22 22 O 1.21514 * 120.00352 * 180.02562 * 21 2 1 23 23 O 1.34638 * 120.00196 * 359.97438 * 21 2 1 24 24 C 1.45196 * 117.00443 * 180.02562 * 23 21 2 25 25 C 1.53004 * 109.46956 * 59.99981 * 24 23 21 26 26 C 1.52995 * 109.47232 * 180.02562 * 24 23 21 27 27 C 1.52995 * 109.46907 * 300.00254 * 24 23 21 28 28 H 1.08999 * 109.47292 * 89.99853 * 1 2 3 29 29 H 1.09006 * 109.47294 * 210.00097 * 1 2 3 30 30 H 1.08997 * 109.47426 * 329.99426 * 1 2 3 31 31 H 1.08995 * 109.47424 * 330.00429 * 3 2 1 32 32 H 1.08998 * 109.47492 * 210.00005 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99787 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00332 * 4 3 2 35 35 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 36 36 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 37 37 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 38 38 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 39 39 H 1.08998 * 109.47143 * 60.00522 * 25 24 23 40 40 H 1.09006 * 109.46828 * 180.02562 * 25 24 23 41 41 H 1.08996 * 109.47118 * 300.00200 * 25 24 23 42 42 H 1.08997 * 109.47204 * 60.00023 * 26 24 23 43 43 H 1.09008 * 109.47145 * 180.02562 * 26 24 23 44 44 H 1.08998 * 109.47415 * 299.99814 * 26 24 23 45 45 H 1.09002 * 109.47928 * 59.99926 * 27 24 23 46 46 H 1.09006 * 109.47360 * 179.97438 * 27 24 23 47 47 H 1.09002 * 109.47413 * 299.99939 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 8 3.5105 3.5400 0.3920 7 7 3.5484 3.5959 2.6098 8 6 4.2569 4.8103 2.6097 9 6 4.6774 5.5239 1.4730 10 7 5.3025 6.6031 1.8709 11 7 5.3137 6.6168 3.2715 12 6 5.8802 7.5829 4.0661 13 1 5.8315 7.4946 5.1414 14 6 6.5163 8.6743 3.4866 15 7 6.5751 8.7819 2.1794 16 14 7.2863 9.9888 4.5676 17 1 8.3342 9.3753 5.4226 18 1 7.8965 11.0382 3.7121 19 1 6.2401 10.5982 5.4273 20 6 4.6613 5.4994 3.7063 21 6 2.1388 -1.1672 -0.0005 22 8 3.3540 -1.1672 -0.0001 23 8 1.4657 -2.3332 -0.0005 24 6 2.2564 -3.5510 -0.0005 25 6 3.1391 -3.5858 1.2488 26 6 1.3244 -4.7643 -0.0012 27 6 3.1391 -3.5858 -1.2497 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1498 1.1385 -0.5138 33 1 3.0416 0.9507 1.9563 34 1 1.5000 1.8407 1.9563 35 1 3.3056 3.1760 3.4498 36 1 4.5107 5.2324 0.4466 37 1 7.0187 9.5438 1.7749 38 1 4.4969 5.2158 4.7353 39 1 2.5103 -3.5610 2.1387 40 1 3.7331 -4.4998 1.2485 41 1 3.8031 -2.7214 1.2488 42 1 0.6960 -4.7392 -0.8913 43 1 1.9181 -5.6785 -0.0007 44 1 0.6953 -4.7397 0.8886 45 1 3.8031 -2.7214 -1.2498 46 1 3.7331 -4.4998 -1.2495 47 1 2.5103 -3.5609 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795852586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:43 Heat of formation + Delta-G solvation = -30.880042 kcal Electronic energy + Delta-G solvation = -28977.140555 eV Core-core repulsion = 24776.610372 eV Total energy + Delta-G solvation = -4200.530183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02132 -39.89844 -38.74682 -37.77837 -35.79142 -34.28528 -34.12493 -33.12862 -31.44003 -30.15935 -27.88009 -27.70666 -27.63349 -26.97084 -25.27010 -24.28528 -21.78019 -20.93234 -20.10854 -19.52650 -19.36838 -18.06513 -17.54638 -16.98492 -16.64028 -16.18742 -15.49897 -15.38790 -15.33390 -15.00640 -14.76043 -14.44782 -14.09466 -13.77471 -13.66949 -13.45031 -13.15822 -12.85357 -12.83995 -12.73464 -12.52049 -12.47636 -12.27995 -12.17120 -12.08906 -11.68275 -11.64301 -11.53711 -11.38958 -11.23588 -11.09861 -10.93967 -10.60046 -10.54509 -10.17731 -10.12252 -9.26679 -9.13531 -8.94262 -8.76765 -8.02969 -6.66927 -6.53134 -4.20198 1.92083 2.66066 2.85842 3.06061 3.06367 3.10178 3.49712 3.70516 3.75823 3.94559 4.42973 4.45331 4.47075 4.61736 4.76014 4.85465 4.87858 4.95456 5.04606 5.16174 5.19491 5.24620 5.26042 5.28201 5.39682 5.45652 5.48462 5.51535 5.58521 5.67396 5.74662 5.89910 6.03775 6.06578 6.22748 6.26959 6.28547 6.49210 6.93072 6.98861 7.14278 7.15651 7.27403 7.88378 8.16596 8.20763 8.32041 8.66030 8.88758 9.40791 9.70179 10.42876 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030837 B = 0.001814 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.780282 B =15434.464774 C =15649.970889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.600 5.600 3 C 0.148 3.852 4 C -0.153 4.153 5 C 0.504 3.496 6 O -0.538 6.538 7 N -0.624 5.624 8 C -0.060 4.060 9 C -0.033 4.033 10 N -0.261 5.261 11 N -0.143 5.143 12 C -0.324 4.324 13 H 0.115 0.885 14 C 0.046 3.954 15 N -0.771 5.771 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.084 4.084 21 C 0.649 3.351 22 O -0.561 6.561 23 O -0.364 6.364 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.140 4.140 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.275 0.725 38 H 0.145 0.855 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 -23.080 -1.220 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C 0.026 3.974 4 C -0.194 4.194 5 C 0.289 3.711 6 O -0.416 6.416 7 N -0.266 5.266 8 C -0.166 4.166 9 C -0.208 4.208 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.235 4.235 21 C 0.403 3.597 22 O -0.450 6.450 23 O -0.279 6.279 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.241 4.241 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.193 0.807 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.622 -21.577 -2.541 24.639 hybrid contribution -0.287 -0.488 1.396 1.507 sum -11.910 -22.065 -1.145 25.100 Atomic orbital electron populations 1.21791 0.78577 1.03463 1.02254 1.46778 1.07321 1.03581 1.76337 1.21231 0.98748 0.81758 0.95666 1.21947 1.01560 0.96177 0.99737 1.20126 0.80994 0.86091 0.83880 1.90608 1.55062 1.64680 1.31204 1.42526 1.54426 1.21782 1.07916 1.17291 1.12904 0.92174 0.94203 1.24114 1.03382 0.94524 0.98827 1.78249 1.23580 1.19255 0.88109 1.44537 1.29982 1.12195 1.04384 1.19810 1.35345 1.00316 0.90131 0.86714 1.25636 0.96601 0.98664 0.96213 1.70210 1.32725 1.27491 1.09281 0.85901 0.79448 0.79445 0.79372 1.19183 1.20140 1.19192 1.21259 1.11136 0.94172 0.96960 1.18061 0.84078 0.81197 0.76327 1.90933 1.12166 1.86700 1.55188 1.86288 1.41039 1.13802 1.86723 1.22065 0.90867 0.80643 0.96608 1.22517 1.00654 1.04623 0.96290 1.21850 0.99554 0.95006 1.03260 1.22518 1.00662 1.04605 0.96316 0.92398 0.90561 0.90633 0.88745 0.88365 0.88825 0.89124 0.77056 0.80692 0.91430 0.83773 0.92221 0.91184 0.89244 0.91534 0.90189 0.91536 0.89250 0.91186 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.44 59.84 0.62 1.21 16 2 N -0.60 -6.32 2.87 -187.42 -0.54 -6.86 16 3 C 0.15 1.77 4.70 -4.04 -0.02 1.75 16 4 C -0.15 -1.81 6.02 -27.88 -0.17 -1.98 16 5 C 0.50 8.57 7.80 -10.98 -0.09 8.48 16 6 O -0.54 -11.25 13.13 5.54 0.07 -11.17 16 7 N -0.62 -11.05 5.47 -10.00 -0.05 -11.11 16 8 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 9 C -0.03 -0.88 10.85 -17.04 -0.18 -1.06 16 10 N -0.26 -7.69 10.40 30.80 0.32 -7.37 16 11 N -0.14 -3.98 3.74 -11.41 -0.04 -4.03 16 12 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 13 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 14 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.78 11.81 55.49 0.66 -21.13 16 16 Si 0.93 19.10 29.55 -169.99 -5.02 14.07 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 20 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 21 C 0.65 7.95 7.70 54.05 0.42 8.37 16 22 O -0.56 -8.33 11.46 -19.28 -0.22 -8.55 16 23 O -0.36 -3.83 8.71 -40.32 -0.35 -4.18 16 24 C 0.13 1.19 1.13 -90.62 -0.10 1.09 16 25 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 26 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 27 C -0.18 -1.66 8.37 37.15 0.31 -1.35 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.50 7.38 -51.93 -0.38 0.11 16 30 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 31 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 32 H 0.10 1.43 7.38 -51.93 -0.38 1.05 16 33 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.40 5.40 8.83 -40.82 -0.36 5.04 16 36 H 0.18 4.62 5.92 -52.49 -0.31 4.31 16 37 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -35.28 389.82 -5.97 -41.26 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.08 Total: 10.40 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 0.42 Total: 2.79 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.34 Total: -50.49 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.50 Total: -23.90 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.28 -5.97 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795852586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.375 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds