Wall clock time and date at job start Tue Mar 31 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 119.99951 * 2 1 4 4 C 1.53004 * 109.47198 * 90.00069 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21303 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 C 1.34775 * 120.00056 * 180.02562 * 2 1 3 22 22 O 1.21514 * 120.00352 * 180.02562 * 21 2 1 23 23 O 1.34638 * 120.00196 * 359.97438 * 21 2 1 24 24 C 1.45196 * 117.00443 * 180.02562 * 23 21 2 25 25 C 1.53004 * 109.46956 * 59.99981 * 24 23 21 26 26 C 1.52995 * 109.47232 * 180.02562 * 24 23 21 27 27 C 1.52995 * 109.46907 * 300.00254 * 24 23 21 28 28 H 1.08999 * 109.47292 * 89.99853 * 1 2 3 29 29 H 1.09006 * 109.47294 * 210.00097 * 1 2 3 30 30 H 1.08997 * 109.47426 * 329.99426 * 1 2 3 31 31 H 1.08995 * 109.47424 * 330.00429 * 3 2 1 32 32 H 1.08998 * 109.47492 * 210.00005 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99787 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00332 * 4 3 2 35 35 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 36 36 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 37 37 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 38 38 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 39 39 H 1.08998 * 109.47143 * 60.00522 * 25 24 23 40 40 H 1.09006 * 109.46828 * 180.02562 * 25 24 23 41 41 H 1.08996 * 109.47118 * 300.00200 * 25 24 23 42 42 H 1.08997 * 109.47204 * 60.00023 * 26 24 23 43 43 H 1.09008 * 109.47145 * 180.02562 * 26 24 23 44 44 H 1.08998 * 109.47415 * 299.99814 * 26 24 23 45 45 H 1.09002 * 109.47928 * 59.99926 * 27 24 23 46 46 H 1.09006 * 109.47360 * 179.97438 * 27 24 23 47 47 H 1.09002 * 109.47413 * 299.99939 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 8 3.5105 3.5400 0.3920 7 7 3.5484 3.5959 2.6098 8 6 4.2569 4.8103 2.6097 9 6 4.6774 5.5239 1.4730 10 7 5.3025 6.6031 1.8709 11 7 5.3137 6.6168 3.2715 12 6 5.8802 7.5829 4.0661 13 1 5.8315 7.4946 5.1414 14 6 6.5163 8.6743 3.4866 15 7 6.5751 8.7819 2.1794 16 14 7.2863 9.9888 4.5676 17 1 8.3342 9.3753 5.4226 18 1 7.8965 11.0382 3.7121 19 1 6.2401 10.5982 5.4273 20 6 4.6613 5.4994 3.7063 21 6 2.1388 -1.1672 -0.0005 22 8 3.3540 -1.1672 -0.0001 23 8 1.4657 -2.3332 -0.0005 24 6 2.2564 -3.5510 -0.0005 25 6 3.1391 -3.5858 1.2488 26 6 1.3244 -4.7643 -0.0012 27 6 3.1391 -3.5858 -1.2497 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1498 1.1385 -0.5138 33 1 3.0416 0.9507 1.9563 34 1 1.5000 1.8407 1.9563 35 1 3.3056 3.1760 3.4498 36 1 4.5107 5.2324 0.4466 37 1 7.0187 9.5438 1.7749 38 1 4.4969 5.2158 4.7353 39 1 2.5103 -3.5610 2.1387 40 1 3.7331 -4.4998 1.2485 41 1 3.8031 -2.7214 1.2488 42 1 0.6960 -4.7392 -0.8913 43 1 1.9181 -5.6785 -0.0007 44 1 0.6953 -4.7397 0.8886 45 1 3.8031 -2.7214 -1.2498 46 1 3.7331 -4.4998 -1.2495 47 1 2.5103 -3.5609 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795852586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:43 Heat of formation + Delta-G solvation = -55.174438 kcal Electronic energy + Delta-G solvation = -28978.194039 eV Core-core repulsion = 24776.610372 eV Total energy + Delta-G solvation = -4201.583667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90920 -41.65643 -40.29830 -38.68166 -36.73654 -35.91073 -34.96937 -34.93251 -32.60735 -32.05860 -29.61614 -28.33940 -28.26999 -27.76555 -26.91345 -25.62787 -22.96384 -22.55303 -21.57846 -21.15790 -20.35236 -19.35128 -18.87035 -18.12183 -17.60935 -17.39167 -17.19921 -16.88045 -16.58639 -16.06633 -15.78283 -15.46799 -15.42343 -15.15023 -14.89672 -14.66840 -14.42420 -14.19685 -14.06107 -13.47546 -13.34459 -13.32706 -13.20378 -13.12281 -13.05351 -12.86868 -12.85756 -12.82712 -12.79350 -12.44476 -12.25173 -12.13657 -12.08667 -11.80676 -11.35860 -11.06527 -10.98683 -10.83396 -10.68935 -10.08981 -9.84306 -8.51185 -8.46022 -6.23290 1.08999 1.23802 1.39841 1.54953 1.56405 1.73653 1.88443 2.08257 2.34312 2.54408 2.85333 3.00762 3.09808 3.78522 3.79572 3.83446 3.96443 3.98804 4.05312 4.33684 4.45291 4.50386 4.53436 4.63109 4.63904 4.67623 4.69432 4.79369 4.83153 4.87589 4.91695 4.95099 4.98653 5.01183 5.11123 5.15558 5.30755 5.30999 5.33464 5.44483 5.49321 5.51194 5.96775 6.29475 6.33286 6.75078 6.77517 7.27849 7.41831 7.48682 7.69948 8.53303 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030837 B = 0.001814 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.780282 B =15434.464774 C =15649.970889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.596 5.596 3 C 0.152 3.848 4 C -0.132 4.132 5 C 0.502 3.498 6 O -0.578 6.578 7 N -0.617 5.617 8 C -0.045 4.045 9 C -0.060 4.060 10 N -0.311 5.311 11 N -0.169 5.169 12 C -0.355 4.355 13 H 0.141 0.859 14 C -0.008 4.008 15 N -0.826 5.826 16 Si 1.020 2.980 17 H -0.254 1.254 18 H -0.278 1.278 19 H -0.252 1.252 20 C -0.081 4.081 21 C 0.643 3.357 22 O -0.594 6.594 23 O -0.360 6.360 24 C 0.124 3.876 25 C -0.180 4.180 26 C -0.133 4.133 27 C -0.181 4.181 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.420 0.580 36 H 0.168 0.832 37 H 0.276 0.724 38 H 0.188 0.812 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -24.879 1.174 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.029 3.971 4 C -0.173 4.173 5 C 0.290 3.710 6 O -0.458 6.458 7 N -0.262 5.262 8 C -0.151 4.151 9 C -0.236 4.236 10 N -0.144 5.144 11 N 0.062 4.938 12 C -0.486 4.486 13 H 0.158 0.842 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.838 3.162 17 H -0.178 1.178 18 H -0.203 1.203 19 H -0.176 1.176 20 C -0.232 4.232 21 C 0.398 3.602 22 O -0.485 6.485 23 O -0.275 6.275 24 C 0.088 3.912 25 C -0.237 4.237 26 C -0.190 4.190 27 C -0.238 4.238 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.150 0.850 35 H 0.257 0.743 36 H 0.185 0.815 37 H 0.086 0.914 38 H 0.205 0.795 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.529 -23.442 -0.117 27.067 hybrid contribution 0.201 -0.114 0.587 0.631 sum -13.328 -23.557 0.470 27.070 Atomic orbital electron populations 1.22036 0.76123 1.04940 1.03290 1.46803 1.08641 1.02456 1.75670 1.21043 0.97741 0.82715 0.95561 1.21855 1.02609 0.92721 1.00120 1.21083 0.79988 0.87069 0.82820 1.90603 1.56366 1.66061 1.32803 1.42502 1.53952 1.20145 1.09623 1.17372 1.11609 0.93382 0.92735 1.24177 1.04548 0.95220 0.99612 1.78142 1.25316 1.20930 0.89974 1.44838 1.31381 1.13736 1.03893 1.20576 1.35881 1.00788 0.91371 0.84180 1.26898 0.96499 1.00981 0.97559 1.70400 1.34501 1.28652 1.11835 0.84647 0.78698 0.75661 0.77152 1.17788 1.20332 1.17622 1.22010 1.09395 0.92791 0.98973 1.18287 0.83822 0.81986 0.76112 1.90930 1.13754 1.87242 1.56584 1.86302 1.41034 1.13715 1.86416 1.22401 0.91633 0.80955 0.96238 1.22467 1.00444 1.04090 0.96692 1.21860 0.99322 0.94025 1.03792 1.22476 1.00467 1.04062 0.96804 0.91646 0.89622 0.88607 0.87903 0.91730 0.88143 0.85046 0.74282 0.81525 0.91429 0.79525 0.91581 0.89387 0.92339 0.91113 0.88239 0.90884 0.92485 0.89274 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.44 127.77 1.33 2.23 16 2 N -0.60 -11.73 2.87 -977.28 -2.81 -14.54 16 3 C 0.15 3.53 4.70 86.38 0.41 3.93 16 4 C -0.13 -2.85 6.02 29.85 0.18 -2.67 16 5 C 0.50 16.66 7.80 87.66 0.68 17.34 16 6 O -0.58 -24.72 13.13 -3.10 -0.04 -24.76 16 7 N -0.62 -20.85 5.47 -303.92 -1.66 -22.51 16 8 C -0.04 -2.07 6.90 37.73 0.26 -1.81 16 9 C -0.06 -3.34 10.85 85.42 0.93 -2.42 16 10 N -0.31 -19.14 10.40 -56.47 -0.59 -19.73 16 11 N -0.17 -9.55 3.74 -190.02 -0.71 -10.26 16 12 C -0.36 -19.05 10.25 84.01 0.86 -18.18 16 13 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 14 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 15 N -0.83 -48.47 11.81 21.66 0.26 -48.21 16 16 Si 1.02 39.03 29.55 68.60 2.03 41.06 16 17 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 20 C -0.08 -3.80 11.49 83.37 0.96 -2.84 16 21 C 0.64 15.46 7.70 129.79 1.00 16.46 16 22 O -0.59 -18.16 11.46 19.80 0.23 -17.94 16 23 O -0.36 -7.13 8.71 -55.47 -0.48 -7.61 16 24 C 0.12 2.03 1.13 -10.80 -0.01 2.01 16 25 C -0.18 -3.02 8.37 71.98 0.60 -2.42 16 26 C -0.13 -1.23 8.85 71.98 0.64 -0.60 16 27 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.86 7.38 -2.38 -0.02 0.84 16 30 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 31 H 0.10 2.21 8.03 -2.39 -0.02 2.19 16 32 H 0.06 1.96 7.38 -2.39 -0.02 1.94 16 33 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.42 10.14 8.83 -92.71 -0.82 9.32 16 36 H 0.17 9.34 5.92 -2.91 -0.02 9.32 16 37 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.19 6.83 8.06 -2.91 -0.02 6.80 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 46 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.76 389.82 5.30 -77.46 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.17 Total: 38.52 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 8.91 Total: 8.51 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.51 Total: -115.25 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.30 Total: -50.31 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -82.76 5.30 -77.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795852586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.288 kcal (2) G-P(sol) polarization free energy of solvation -82.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds